Query         gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs    136 out of 1089
Neff          7.0 
Searched_HMMs 13730
Date          Wed Jun  1 09:08:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780577.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2f3ga_ b.84.3.1 (A:) Glucose-  98.1 1.7E-05 1.3E-09   53.5  10.0  133   67-221     3-149 (150)
  2 d1gpra_ b.84.3.1 (A:) Glucose   98.1 1.3E-05 9.3E-10   54.4   9.2  136   63-220     7-157 (158)
  3 d2gpra_ b.84.3.1 (A:) Glucose   98.0 2.2E-05 1.6E-09   52.8   8.6  130   66-217     8-151 (154)
  4 d1iyua_ b.84.1.1 (A:) Lipoyl d  94.8   0.037 2.7E-06   31.2   6.2   57  168-225    17-77  (79)
  5 d1dcza_ b.84.1.1 (A:) Biotin c  93.5   0.094 6.8E-06   28.5   6.0   51  169-220    22-76  (77)
  6 d1ghja_ b.84.1.1 (A:) Lipoyl d  93.0   0.094 6.8E-06   28.5   5.4   53  169-222    21-77  (79)
  7 d1bdoa_ b.84.1.1 (A:) Biotinyl  92.9    0.08 5.8E-06   29.0   4.9   52  168-220    24-79  (80)
  8 d1k8ma_ b.84.1.1 (A:) Lipoyl d  92.5   0.059 4.3E-06   29.9   3.8   55  169-224    24-82  (87)
  9 d1qjoa_ b.84.1.1 (A:) Lipoyl d  92.4   0.092 6.7E-06   28.6   4.7   54  168-222    19-76  (80)
 10 d1gjxa_ b.84.1.1 (A:) Lipoyl d  91.4   0.065 4.8E-06   29.6   3.0   54  169-223    21-78  (81)
 11 d2f3ga_ b.84.3.1 (A:) Glucose-  90.2    0.12 8.4E-06   27.9   3.3   50   64-115    37-86  (150)
 12 d2gpra_ b.84.3.1 (A:) Glucose   90.0    0.16 1.1E-05   27.0   3.9   49   64-114    43-91  (154)
 13 d1y8ob1 b.84.1.1 (B:128-229) L  89.2    0.38 2.8E-05   24.4   5.4   56  170-226    26-86  (102)
 14 d1laba_ b.84.1.1 (A:) Lipoyl d  89.0     0.1 7.5E-06   28.3   2.4   53  169-222    21-77  (80)
 15 d1e2wa2 b.84.2.2 (A:169-232) C  87.4    0.11 8.1E-06   28.0   1.7   27  189-215    33-59  (64)
 16 d1ci3m2 b.84.2.2 (M:170-231) C  85.2    0.16 1.1E-05   27.0   1.5   26  190-215    32-57  (62)
 17 d1pmra_ b.84.1.1 (A:) Lipoyl d  84.1   0.066 4.8E-06   29.6  -0.8   52  170-222    23-78  (80)
 18 d1hcza2 b.84.2.2 (A:168-230) C  79.6    0.32 2.4E-05   24.9   1.4   26  189-214    33-58  (63)
 19 d2axtt1 f.23.34.1 (T:1-30) Pho  79.1     1.1 7.8E-05   21.4   3.9   20   41-60     10-29  (30)
 20 d1tu2b2 b.84.2.2 (B:170-235) C  75.5    0.27   2E-05   25.4   0.0   26  189-214    35-60  (66)
 21 d1qwya_ b.84.3.2 (A:) Peptidog  74.8     2.3 0.00017   19.2   6.6   61  110-190   179-239 (270)
 22 d1vf5c2 b.84.2.2 (C:170-231) C  53.7     0.4 2.9E-05   24.3  -2.6   26  189-214    35-60  (62)
 23 d2f2ha3 b.71.1.4 (A:586-665) P  42.0     8.5 0.00062   15.4   5.2   40  189-228    38-77  (80)
 24 d1fdra1 b.43.4.2 (A:2-100) Fer  33.4     5.6 0.00041   16.6   0.7   65  121-186    28-97  (99)
 25 d2bmwa1 b.43.4.2 (A:9-141) Fer  28.6      14   0.001   14.0   2.7   96   70-184    11-129 (133)
 26 d1brwa3 d.41.3.1 (A:331-433) P  28.1       8 0.00058   15.6   0.7   20  167-186    48-67  (103)
 27 d1so9a_ b.146.1.1 (A:) Cytochr  27.8      14   0.001   13.9   2.3   27  159-185    70-96  (131)
 28 d1xpma2 c.95.1.2 (A:168-388) 3  27.1      13 0.00093   14.2   1.6   20  102-121    57-76  (221)
 29 d1udxa1 b.117.1.1 (A:1-156) Ob  21.0      19  0.0014   13.1   2.7   54  170-231    64-117 (156)

No 1  
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}
Probab=98.09  E-value=1.7e-05  Score=53.53  Aligned_cols=133  Identities=12%  Similarity=0.131  Sum_probs=88.6

Q ss_pred             EEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEE
Q ss_conf             08863054143233115730000046872699996051101248975315451013146555650101200157068999
Q gi|254780577|r   67 LLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLV  146 (232)
Q Consensus        67 ~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~  146 (232)
                      .++||++|++..++++.|+...+-.=+  .=+.|  -|-+ +...||++|+|....-.                 .-.+.
T Consensus         3 ~i~aP~~G~vi~L~~v~D~vFs~~~mG--~GvAI--~P~~-~~v~AP~dG~V~~v~~T-----------------~HAig   60 (150)
T d2f3ga_           3 EIIAPLSGEIVNIEDVPDVVFAEKIVG--DGIAI--KPTG-NKMVAPVDGTIGKIFET-----------------NHAFS   60 (150)
T ss_dssp             EEECSSSEEEECGGGSSCHHHHTTSSC--EEEEE--EECS-SEEECSSSEEEEEECTT-----------------SSEEE
T ss_pred             EEEEECCCEEEECCCCCCHHHHCCCCC--CEEEE--EECC-CEEEEECCEEEEEECCC-----------------CCEEE
T ss_conf             999826856988231989588068843--75999--9579-92995108799998778-----------------98999


Q ss_pred             EECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CCEEEEECCCEEEE
Q ss_conf             970898299998515----765503651389985703866888832--------8989999639--97367622988993
Q gi|254780577|r  147 LKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DANIRVEIGQKTVA  212 (232)
Q Consensus       147 ~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~~~~V~~Gq~V~a  212 (232)
                      +++++|.-.+++++-    +...-..+.+++||++++||.+.-+-+        --.+-+.+.+  +++........|++
T Consensus        61 i~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g~v~~  140 (150)
T d2f3ga_          61 IESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTV  140 (150)
T ss_dssp             EEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCSEECT
T ss_pred             EEECCCEEEEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCEEEEEEECCHHCCEEEECCCCEEE
T ss_conf             99289339999976455424884148995689998899999998599998549997169999774760203424785851


Q ss_pred             EEEEEEEEC
Q ss_conf             077879717
Q gi|254780577|r  213 GETVIAEFN  221 (232)
Q Consensus       213 GeTila~l~  221 (232)
                      |++.|-.+.
T Consensus       141 g~~~i~~i~  149 (150)
T d2f3ga_         141 GETPVIRIK  149 (150)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCEEEEEE
T ss_conf             993799998


No 2  
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}
Probab=98.09  E-value=1.3e-05  Score=54.44  Aligned_cols=136  Identities=11%  Similarity=0.177  Sum_probs=91.5

Q ss_pred             CCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEE
Q ss_conf             27660886305414323311573000004687269999605110124897531545101314655565010120015706
Q gi|254780577|r   63 IDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNER  142 (232)
Q Consensus        63 ~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER  142 (232)
                      .++..++||++|++..++++.|+.-.+-.=+  .=+.|  -|-+ +...||++|+|..+.-.                 +
T Consensus         7 ~~~~~i~aP~~G~vi~L~~V~D~vFs~~~~G--~G~aI--~P~~-~~v~AP~~G~I~~i~~T-----------------~   64 (158)
T d1gpra_           7 IGEEVFVSPITGEIHPITDVPDQVFSGKMMG--DGFAI--LPSE-GIVVSPVRGKILNVFPT-----------------K   64 (158)
T ss_dssp             TSCBCCBCSSSEEEEEGGGSSSHHHHTTSSC--EEEEE--EESS-CEEECSSSEEEEEECTT-----------------S
T ss_pred             CCCEEEEECCCCEEEEHHHCCCHHHCCCCCC--CEEEE--EECC-CEEEEEECEEEEEECCC-----------------C
T ss_conf             6987999447867988013978475557833--64999--9739-98998208599998379-----------------9


Q ss_pred             EEEEEECCCCEEEEEEECCC----CCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CC-EEEEECC
Q ss_conf             89999708982999985157----65503651389985703866888832--------8989999639--97-3676229
Q gi|254780577|r  143 QSLVLKTIHGNIGIVQIAGF----VARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DA-NIRVEIG  207 (232)
Q Consensus       143 ~~~~~~~~~~~i~~~qiag~----~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~-~~~V~~G  207 (232)
                      -.+.+++++|.-.+++++--    -..-..+++++||++++||.+.-+-+        --.+-+.+.+  ++ .+.+...
T Consensus        65 HAigi~t~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~  144 (158)
T d1gpra_          65 HAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKAS  144 (158)
T ss_dssp             SEEEEEETTSCEEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCEEEEESSCCTTCCEEECCC
T ss_pred             CEEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCEECCCCEEEEECHHHHHHHCCCCCEEEEEEECCCCCEEEEECC
T ss_conf             79999948972999998005201489606999868999968989777589999960999734999971630635887058


Q ss_pred             CEEEEEEEEEEEE
Q ss_conf             8899307787971
Q gi|254780577|r  208 QKTVAGETVIAEF  220 (232)
Q Consensus       208 q~V~aGeTila~l  220 (232)
                      ..|.+|++.|-++
T Consensus       145 ~~v~~g~~~i~~v  157 (158)
T d1gpra_         145 GSVNREQEDIVKI  157 (158)
T ss_dssp             SEECTTCBCCEEE
T ss_pred             CCEECCCCEEEEE
T ss_conf             8477199527997


No 3  
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=97.97  E-value=2.2e-05  Score=52.81  Aligned_cols=130  Identities=14%  Similarity=0.201  Sum_probs=85.9

Q ss_pred             CEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEE
Q ss_conf             60886305414323311573000004687269999605110124897531545101314655565010120015706899
Q gi|254780577|r   66 NLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSL  145 (232)
Q Consensus        66 ~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~  145 (232)
                      -.++||++|++..++++.|+.-.+  +--..-+.|.  |-+ +...||++|+|..+.-.                 +-.+
T Consensus         8 ~~i~aP~~G~vi~l~~v~D~vFs~--k~~G~G~aI~--P~~-~~v~AP~dG~I~~i~~T-----------------~HAi   65 (154)
T d2gpra_           8 LKVLAPCDGTIITLDEVEDEVFKE--RMLGDGFAIN--PKS-NDFHAPVSGKLVTAFPT-----------------KHAF   65 (154)
T ss_dssp             EEEECSSSEEEECGGGSSCHHHHT--TSSCEEEEEE--ESS-SEEECSSCEEEEECCTT-----------------CSEE
T ss_pred             EEEEECCCCEEEECCCCCCHHHCC--CCCCCEEEEE--ECC-CEEEEECCEEEEEECCC-----------------CCEE
T ss_conf             199962773698811088856556--8973769999--659-97998538099998778-----------------9699


Q ss_pred             EEECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE------C-C-EEEEEECC--CCEEEEECCCEEE
Q ss_conf             9970898299998515----765503651389985703866888832------8-9-89999639--9736762298899
Q gi|254780577|r  146 VLKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF------G-S-RVDLFLPK--DANIRVEIGQKTV  211 (232)
Q Consensus       146 ~~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf------G-S-~vdi~lP~--~~~~~V~~Gq~V~  211 (232)
                      .+++++|.-.+++++-    +-..-..+.+++||+|++||.+.-+-+      | + .+-+.+.+  +.++.+.....|+
T Consensus        66 gi~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g~V~  145 (154)
T d2gpra_          66 GIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVK  145 (154)
T ss_dssp             EEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCCCSCBCCEEEC
T ss_pred             EEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCC
T ss_conf             99918998999997636101588326899548999908999999859999863999844999986987257762468575


Q ss_pred             EEEEEE
Q ss_conf             307787
Q gi|254780577|r  212 AGETVI  217 (232)
Q Consensus       212 aGeTil  217 (232)
                      +|++++
T Consensus       146 ~Gd~i~  151 (154)
T d2gpra_         146 QGDVVA  151 (154)
T ss_dssp             TTCEEE
T ss_pred             CCCEEE
T ss_conf             899999


No 4  
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=94.82  E-value=0.037  Score=31.21  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCC
Q ss_conf             651389985703866888832-89899996399---73676229889930778797178778
Q gi|254780577|r  168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKP  225 (232)
Q Consensus       168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~  225 (232)
                      .-++++||.+++||.+..+.- ....++.-|.+   .+++++.||.|..|+ .|+.+....+
T Consensus        17 ~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~~~~   77 (79)
T d1iyua_          17 ELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGD-AIIELEPAAG   77 (79)
T ss_dssp             EECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTS-EEEEEECCCS
T ss_pred             EEEECCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCEECCCC-EEEEEECCCC
T ss_conf             999369999936851999993671789980366489998508989988999-9999946766


No 5  
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=93.50  E-value=0.094  Score=28.53  Aligned_cols=51  Identities=18%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE
Q ss_conf             51389985703866888832-89899996399---736762298899307787971
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l  220 (232)
                      .++++||++++||.+..+.= ...+++.-|.+   .+++|+.||.|..|+ +|.++
T Consensus        22 ~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~-~L~~i   76 (77)
T d1dcza_          22 ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQ-GLIKI   76 (77)
T ss_dssp             ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTS-EEEEE
T ss_pred             EECCCCCEEECCCEEEEEECCCCCEEEEECCCEEEEEEEECCCCEECCCC-EEEEE
T ss_conf             99679999958976999993675699996789999877637999989999-99993


No 6  
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}
Probab=92.97  E-value=0.094  Score=28.52  Aligned_cols=53  Identities=19%  Similarity=0.240  Sum_probs=41.7

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC
Q ss_conf             51389985703866888832-89899996399---73676229889930778797178
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS  222 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~  222 (232)
                      -++++||.+++||.+--+.- ...+++.-|.+   .+++++.||.|..|+ +||.+.+
T Consensus        21 w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~-~l~~i~~   77 (79)
T d1ghja_          21 WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGE-LLGKLTE   77 (79)
T ss_dssp             CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTC-EEEEECC
T ss_pred             EECCCCCEEEECCCEEEEECCCEEEEEEECEEEEEEEEECCCCCEECCCC-EEEEEEC
T ss_conf             98389999960866999985723999982404999999819999988999-9999947


No 7  
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}
Probab=92.92  E-value=0.08  Score=29.00  Aligned_cols=52  Identities=21%  Similarity=0.181  Sum_probs=39.3

Q ss_pred             EEECCCCCEEECCCEEEEEEECC-EEEEEECCC---CEEEEECCCEEEEEEEEEEEE
Q ss_conf             65138998570386688883289-899996399---736762298899307787971
Q gi|254780577|r  168 VCWVKPTMKVEAGMRFGIIRFGS-RVDLFLPKD---ANIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       168 ~~~~~~g~~v~~G~r~G~irfGS-~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l  220 (232)
                      ..++++||++++||.++.+.--- ..++.-|.+   .+++|+.||.|..|+ +|..+
T Consensus        24 ~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~-~L~~i   79 (80)
T d1bdoa_          24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDE-PLVVI   79 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTC-EEEEE
T ss_pred             CEECCCCCEEECCCEEEEEECCCCCEEEECCCCEEEEEEEECCCCEECCCC-EEEEE
T ss_conf             809127985908999999991760289995898499899968979989999-99997


No 8  
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.50  E-value=0.059  Score=29.89  Aligned_cols=55  Identities=11%  Similarity=0.115  Sum_probs=42.7

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCC
Q ss_conf             51389985703866888832-89899996399---7367622988993077879717877
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK  224 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~  224 (232)
                      -+.++||.+++||.+.-+.- -..+++.-|.+   .++.++.||.|..|+ .|+.+....
T Consensus        24 w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~-~l~~i~~~~   82 (87)
T d1k8ma_          24 WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGK-PLVDIETEA   82 (87)
T ss_dssp             ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTS-EEEEEECSC
T ss_pred             EECCCCCEEECCCEEEEEECCCCEEEEEECCCEEEEEEEECCCCEECCCC-EEEEEECCC
T ss_conf             98179999916998999984671688990899999999858999978999-999997677


No 9  
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}
Probab=92.38  E-value=0.092  Score=28.59  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=42.5

Q ss_pred             EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC
Q ss_conf             651389985703866888832-89899996399---73676229889930778797178
Q gi|254780577|r  168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS  222 (232)
Q Consensus       168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~  222 (232)
                      .-+.++|+.+++||.+..+.- ...+++.-|.+   .+++++.||.|..|+ +|+.+..
T Consensus        19 ~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~   76 (80)
T d1qjoa_          19 EVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEV   76 (80)
T ss_dssp             ECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTC-CCEEEES
T ss_pred             EEEECCCCEECCCCEEEEEECCCCCCEEECCEEEEEEEEEECCCCEECCCC-EEEEEEC
T ss_conf             998179899979998999995766623838706799999828999988999-9999965


No 10 
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Probab=91.41  E-value=0.065  Score=29.58  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC
Q ss_conf             51389985703866888832-89899996399---736762298899307787971787
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      -++++||.+++||.+..+.- ...+++.-|.+   .+++++.||.|..|+ .|+.+...
T Consensus        21 w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~-~l~~ie~~   78 (81)
T d1gjxa_          21 VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGG-LIVVVEAE   78 (81)
T ss_dssp             ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSS-CCCEECCS
T ss_pred             EEECCCCEECCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCCEECCCC-EEEEEECC
T ss_conf             98189899979998999994774879874325899999808989988999-99999446


No 11 
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}
Probab=90.16  E-value=0.12  Score=27.93  Aligned_cols=50  Identities=18%  Similarity=0.320  Sum_probs=22.5

Q ss_pred             CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEEC
Q ss_conf             7660886305414323311573000004687269999605110124897531
Q gi|254780577|r   64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIG  115 (232)
Q Consensus        64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~  115 (232)
                      .++.++||+||+|+.+-...-  ...+...+...+-|-+..--|..+--+++
T Consensus        37 ~~~~v~AP~dG~V~~v~~T~H--Aigi~t~~G~eiLIHiGidTV~L~G~gF~   86 (150)
T d2f3ga_          37 TGNKMVAPVDGTIGKIFETNH--AFSIESDSGVELFVHFGIDTVELKGEGFK   86 (150)
T ss_dssp             CSSEEECSSSEEEEEECTTSS--EEEEEETTSCEEEEECSBSGGGGTTTTEE
T ss_pred             CCCEEEEECCEEEEEECCCCC--EEEEEECCCEEEEEEECCCHHHCCCCCEE
T ss_conf             799299510879999877898--99999289339999976455424884148


No 12 
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=89.96  E-value=0.16  Score=27.04  Aligned_cols=49  Identities=6%  Similarity=0.150  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             766088630541432331157300000468726999960511012489753
Q gi|254780577|r   64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPI  114 (232)
Q Consensus        64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~  114 (232)
                      .++.++||+||+|+.+-...-  ...+...+...+-|-...--|..+--+.
T Consensus        43 ~~~~v~AP~dG~I~~i~~T~H--Aigi~t~~G~eiLIHiGidTV~L~G~gF   91 (154)
T d2gpra_          43 KSNDFHAPVSGKLVTAFPTKH--AFGIQTKSGVEILLHIGLDTVSLDGNGF   91 (154)
T ss_dssp             SSSEEECSSCEEEEECCTTCS--EEEEECTTSCEEEEECSSSGGGGTTCSE
T ss_pred             CCCEEEEECCEEEEEECCCCC--EEEEEECCCCEEEEEECCCCCCCCCCEE
T ss_conf             599799853809999877896--9999918998999997636101588326


No 13 
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.18  E-value=0.38  Score=24.44  Aligned_cols=56  Identities=16%  Similarity=0.133  Sum_probs=40.6

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCC-EEEEEEEEEEEECCCCCC
Q ss_conf             1389985703866888832-89899996399---736762298-899307787971787787
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQ-KTVAGETVIAEFNSTKPP  226 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq-~V~aGeTila~l~~~~~~  226 (232)
                      .+++||.+++||.+--+.= -..+++.-|.+   .++.++.|| .|..|+ +||.+.+...+
T Consensus        26 ~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~-~ia~i~~~~~~   86 (102)
T d1y8ob1          26 EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEAD   86 (102)
T ss_dssp             CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC-EEEEEESSGGG
T ss_pred             EECCCCEEECCCCEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCCC
T ss_conf             90899999637529999848478988528768999989746997974999-89999557766


No 14 
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=89.04  E-value=0.1  Score=28.25  Aligned_cols=53  Identities=19%  Similarity=0.268  Sum_probs=39.7

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC
Q ss_conf             51389985703866888832-89899996399---73676229889930778797178
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS  222 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~  222 (232)
                      -++++||.+++||.+--+.- -..+++.-|.+   .++.++.||.|..|+ +|+.+..
T Consensus        21 w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~-~l~~ie~   77 (80)
T d1laba_          21 WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQ-TLITLDA   77 (80)
T ss_dssp             CCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSS-CSBCBBC
T ss_pred             EEECCCCEEEECCCEEEEECCCEEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEEC
T ss_conf             99179999960727999982647999985899999999858989978999-9999946


No 15 
>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=87.35  E-value=0.11  Score=28.04  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=16.2

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEE
Q ss_conf             898999963997367622988993077
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGET  215 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeT  215 (232)
                      |-.+...+|.+.++.|+.||+|++|+.
T Consensus        33 Ge~~~y~Ip~g~~l~V~eGd~V~~G~~   59 (64)
T d1e2wa2          33 GEVVVDKIPAGPDLIVKEGQTVQADQP   59 (64)
T ss_dssp             SCEEEEEECSSSCBCCCTTCEECTTCB
T ss_pred             CCEEEEECCCCCEEEECCCCEEECCCC
T ss_conf             999999747998688889999958973


No 16 
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}
Probab=85.18  E-value=0.16  Score=27.03  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=18.1

Q ss_pred             CEEEEEECCCCEEEEECCCEEEEEEE
Q ss_conf             98999963997367622988993077
Q gi|254780577|r  190 SRVDLFLPKDANIRVEIGQKTVAGET  215 (232)
Q Consensus       190 S~vdi~lP~~~~~~V~~Gq~V~aGeT  215 (232)
                      -..+..+|.+.++.|+.||+|++|+.
T Consensus        32 ~~~~y~Ip~g~~l~V~eGd~V~aG~~   57 (62)
T d1ci3m2          32 TTIVDKIPAGPELIVSEGEEVAAGAA   57 (62)
T ss_dssp             CEEEEEECSSSCBCCCTTCEECTTCB
T ss_pred             CEEEEECCCCCEEEECCCCEEECCCC
T ss_conf             89999868999878879999958971


No 17 
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}
Probab=84.12  E-value=0.066  Score=29.57  Aligned_cols=52  Identities=12%  Similarity=0.112  Sum_probs=38.5

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC
Q ss_conf             1389985703866888832-89899996399---73676229889930778797178
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS  222 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~  222 (232)
                      ++++|+.+++||.+--+.- -..+++.-|.+   .+++++.||+|..|+ +||++.+
T Consensus        23 ~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~-~l~~i~e   78 (80)
T d1pmra_          23 HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQ-ILGRLRE   78 (80)
T ss_dssp             CCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSS-EEEBCCC
T ss_pred             EECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEEC
T ss_conf             9079999927998999985755999951578999998768999987999-9999968


No 18 
>d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip (Brassica rapa) [TaxId: 3711]}
Probab=79.57  E-value=0.32  Score=24.93  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=21.6

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEE
Q ss_conf             89899996399736762298899307
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGE  214 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGe  214 (232)
                      |..|.=.+|.+-++.|++||.|++|+
T Consensus        33 g~~v~~~IP~GpeLiVseG~~V~adq   58 (63)
T d1hcza2          33 ERQVIDIIPRGLELLVSEGESIKLDQ   58 (63)
T ss_dssp             TEEEEEEECTTCCBCCCTTCEECTTC
T ss_pred             CCEEEEECCCCCEEEECCCCEEECCC
T ss_conf             97888861999858980899997797


No 19 
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=79.12  E-value=1.1  Score=21.42  Aligned_cols=20  Identities=35%  Similarity=0.682  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999971388876
Q gi|254780577|r   41 WFGAILTVWCAYFFRDPERV   60 (232)
Q Consensus        41 ~~~~~~~l~~~~FFRdP~R~   60 (232)
                      +-+++-+.|++-|||.|.|.
T Consensus        10 fac~i~lfffaiffreppri   29 (30)
T d2axtt1          10 FACIIALFFFAIFFREPPRI   29 (30)
T ss_dssp             HHHHHHHHHHHHHTSCCCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999984489888


No 20 
>d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena sp., strain PCC 7120 [TaxId: 1167]}
Probab=75.50  E-value=0.27  Score=25.43  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=17.4

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEE
Q ss_conf             89899996399736762298899307
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGE  214 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGe  214 (232)
                      |..|.-.+|.+-++.|++||.|++|+
T Consensus        35 G~~v~e~IP~GpeLiVseG~~Vkadq   60 (66)
T d1tu2b2          35 GEVVSDTIPAGPELIVSEGQAVTAGD   60 (66)
T ss_dssp             TEEECCEECSSCCBSCCTTCEECTTC
T ss_pred             CCEEEEECCCCCEEEECCCCEEECCC
T ss_conf             98987751899868982898896698


No 21 
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]}
Probab=74.84  E-value=2.3  Score=19.24  Aligned_cols=61  Identities=21%  Similarity=0.136  Sum_probs=34.6

Q ss_pred             EEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEEEC
Q ss_conf             89753154510131465556501012001570689999708982999985157655036513899857038668888328
Q gi|254780577|r  110 NRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRFG  189 (232)
Q Consensus       110 ~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~irfG  189 (232)
                      .+|+.+|+|....+...             .--..+.++..++.... .++-+  .++  .+++||.|++||.+|..  |
T Consensus       179 V~A~~dG~V~~ag~~~~-------------g~G~~V~I~h~~g~~~t-~Y~hl--~~~--~V~~Gq~V~~Gq~IG~v--G  238 (270)
T d1qwya_         179 VYSLTDGTVVQAGWSNY-------------GGGNQVTIKEANSNNYQ-WYMHN--NRL--TVSAGDKVKAGDQIAYS--G  238 (270)
T ss_dssp             EECSSSEEEEEEEEETT-------------TTEEEEEEEETTSSEEE-EEEEE--SEE--CCCTTCEECTTCEEEEC--C
T ss_pred             EEEEECEEEEEEEECCC-------------CCCEEEEEEECCCCEEE-EEEEC--CEE--ECCCCCEECCCCEEEEE--C
T ss_conf             99410879999897567-------------99869999708988799-99837--721--13889999868999996--7


Q ss_pred             C
Q ss_conf             9
Q gi|254780577|r  190 S  190 (232)
Q Consensus       190 S  190 (232)
                      +
T Consensus       239 s  239 (270)
T d1qwya_         239 S  239 (270)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


No 22 
>d1vf5c2 b.84.2.2 (C:170-231) Cytochrome f, small domain {Mastigocladus laminosus [TaxId: 83541]}
Probab=53.75  E-value=0.4  Score=24.33  Aligned_cols=26  Identities=35%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEE
Q ss_conf             89899996399736762298899307
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGE  214 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGe  214 (232)
                      |..|.=.+|.+-++.|++||.|++|+
T Consensus        35 G~~v~~~IP~GpeLiVseG~~Vkadq   60 (62)
T d1vf5c2          35 GKTVVDTIPAGPELIVSEGQAVKAGE   60 (62)
T ss_dssp             SSCCCCCCCSSSCCCCCTTCCCTTSC
T ss_pred             CCEEEEEECCCCEEEECCCCEEECCC
T ss_conf             99988740899858973898885798


No 23 
>d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3 {Escherichia coli [TaxId: 562]}
Probab=42.00  E-value=8.5  Score=15.40  Aligned_cols=40  Identities=10%  Similarity=0.110  Sum_probs=26.5

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCCE
Q ss_conf             8989999639973676229889930778797178778720
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLL  228 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~~~~~  228 (232)
                      |..+++|||++.=.+...|+++.+|+++--..+-.+-|+.
T Consensus        38 ~~~~~vylP~G~W~d~~t~~~~~g~~~~~~~~~l~~iPvf   77 (80)
T d2f2ha3          38 AGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVY   77 (80)
T ss_dssp             SCEEEEEECSSEEEETTTCCEEECSEEEEEECCTTCCCEE
T ss_pred             CCEEEEECCCCEEEECCCCCEEECCEEEEEECCCCCCCEE
T ss_conf             9579999288669987899899899899996898655879


No 24 
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.41  E-value=5.6  Score=16.60  Aligned_cols=65  Identities=20%  Similarity=0.286  Sum_probs=34.3

Q ss_pred             EEECCCCCCCHHHCCCCCCCEEEEEEEECC-CCE--EEEEEEC-CCCCCEEEEECCCCCEEECCC-EEEEE
Q ss_conf             131465556501012001570689999708-982--9999851-576550365138998570386-68888
Q gi|254780577|r  121 SVHRNGQFMNAALDKASEQNERQSLVLKTI-HGN--IGIVQIA-GFVARRIVCWVKPTMKVEAGM-RFGII  186 (232)
Q Consensus       121 ~~~~~G~~~~a~~~~~~~~NER~~~~~~~~-~~~--i~~~qia-g~~arrI~~~~~~g~~v~~G~-r~G~i  186 (232)
                      ..|.+|+|.....+.....-.|.+...+.. ++.  +.++.+. |.+...+ +..++||.+.-.. ..|+|
T Consensus        28 ~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~~~~~~~vk~~~~G~~S~~l-~~lk~GD~v~v~gP~~g~F   97 (99)
T d1fdra1          28 LPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRL-AALKPGDEVQVVSEAAGFF   97 (99)
T ss_dssp             CCCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCTTCSSHHHH-HTCCTTCEEEEESSCBCCC
T ss_pred             CCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCEEEEEEEEECCCHHHHHH-HHCCCCCEEEECCCCCCEE
T ss_conf             888998388834677898187888667898774037999996681778889-6599999999875889989


No 25 
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=28.61  E-value=14  Score=13.99  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             EECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCC----CEEEEE
Q ss_conf             6305414323311573000004687269999605110124897531545101314655565010120015----706899
Q gi|254780577|r   70 SPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQ----NERQSL  145 (232)
Q Consensus        70 SPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~----NER~~~  145 (232)
                      .|--++|+....+..+.                +-.+++......+|.  ...|.+|++.....+.....    ..|.+.
T Consensus        11 ~P~~a~V~~~~~lt~~~----------------~~~~v~~i~~~~~~~--~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YS   72 (133)
T d2bmwa1          11 APFIGKVISNEPLVKEG----------------GIGIVQHIKFDLTGG--NLKYIEGQSIGIIPPGVDKNGKPEKLRLYS   72 (133)
T ss_dssp             BCEEEEEEEEEECSCTT----------------CSSCEEEEEEECTTS--CCCCCTTCEEEEECSSBCTTSCBCCCEEEE
T ss_pred             CCEEEEEEEEEECCCCC----------------CCCEEEEEEECCCCC--CCCCCCCCEEEEEECCCCCCCCCCCEEEEE
T ss_conf             98688998789903789----------------874299999715886--377559989999842666566544105554


Q ss_pred             EEECCC------CE--EEEEE-----------ECCCCCCEEEEECCCCCEEECCCEEE
Q ss_conf             997089------82--99998-----------51576550365138998570386688
Q gi|254780577|r  146 VLKTIH------GN--IGIVQ-----------IAGFVARRIVCWVKPTMKVEAGMRFG  184 (232)
Q Consensus       146 ~~~~~~------~~--i~~~q-----------iag~~arrI~~~~~~g~~v~~G~r~G  184 (232)
                      .-++..      ..  +.++.           ..|.....+ +..++||++..--.+|
T Consensus        73 ias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL-~~lk~GD~v~v~GP~G  129 (133)
T d2bmwa1          73 IASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL-THIEPGSEVKITGPVG  129 (133)
T ss_dssp             BCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHH-HTCCTTCEEEEEEEEC
T ss_pred             ECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEHHHH-HHCCCCCEEEEECCCC
T ss_conf             04787677887657999998545566556777772822647-5289989999957765


No 26 
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=28.06  E-value=8  Score=15.60  Aligned_cols=20  Identities=30%  Similarity=0.288  Sum_probs=12.2

Q ss_pred             EEEECCCCCEEECCCEEEEE
Q ss_conf             36513899857038668888
Q gi|254780577|r  167 IVCWVKPTMKVEAGMRFGII  186 (232)
Q Consensus       167 I~~~~~~g~~v~~G~r~G~i  186 (232)
                      |....+.|+.|++||.+..+
T Consensus        48 i~l~~k~Gd~V~~Gd~l~~i   67 (103)
T d1brwa3          48 IVLHKKIGDRVQKGEALATI   67 (103)
T ss_dssp             EEESCCTTCEECTTCEEEEE
T ss_pred             EEEECCCCCEECCCCEEEEE
T ss_conf             59962689997699949999


No 27 
>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}
Probab=27.82  E-value=14  Score=13.90  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             ECCCCCCEEEEECCCCCEEECCCEEEE
Q ss_conf             515765503651389985703866888
Q gi|254780577|r  159 IAGFVARRIVCWVKPTMKVEAGMRFGI  185 (232)
Q Consensus       159 iag~~arrI~~~~~~g~~v~~G~r~G~  185 (232)
                      -||.....|.|++.+.|.++.||..-|
T Consensus        70 ~a~~Yf~KieCFCF~~Q~L~pgE~~~m   96 (131)
T d1so9a_          70 AAGAYFNKVQCFCFTETTLEPGEEMEM   96 (131)
T ss_dssp             SCSTTBTTSCCSSCSCCEECTTCEEEE
T ss_pred             HHHHHEECCCEEEEEEEEECCCCEEEE
T ss_conf             976440547288775169789988987


No 28 
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Probab=27.08  E-value=13  Score=14.21  Aligned_cols=20  Identities=15%  Similarity=0.102  Sum_probs=15.3

Q ss_pred             ECCCCCCEEEEEECCEEEEE
Q ss_conf             05110124897531545101
Q gi|254780577|r  102 MNIFDCHVNRMPIGGEVIKS  121 (232)
Q Consensus       102 ls~~dvH~~raP~~G~V~~~  121 (232)
                      ++-||..+.|.|...-+...
T Consensus        57 ~~dfd~~~fH~P~~km~~ka   76 (221)
T d1xpma2          57 LADFASLCFHVPFTKMGKKA   76 (221)
T ss_dssp             GGGCSEEEECCSSHHHHHHH
T ss_pred             HHHHHEEEEECCCHHHHHHH
T ss_conf             55522598414841558999


No 29 
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.99  E-value=19  Score=13.05  Aligned_cols=54  Identities=17%  Similarity=0.263  Sum_probs=31.3

Q ss_pred             ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCCEEEC
Q ss_conf             13899857038668888328989999639973676229889930778797178778720004
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLLVCR  231 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irfGS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~~~~~~~~  231 (232)
                      ....|..=....+.|  +-|-.+.|-+|.++.+.-..     -+ .+||.|.+...+++||+
T Consensus        64 ~A~~G~~G~~~~~~G--~~G~D~~I~VP~GT~V~~~~-----~~-~~i~dl~~~g~~~lva~  117 (156)
T d1udxa1          64 KAEDGEHGRGSQQHG--RGGEDLVIEVPRGTRVFDAD-----TG-ELLADLTEEGQTVLVAR  117 (156)
T ss_dssp             ECCCCCCCBTTTBCC--CCCCCEEEEECSSEEEEETT-----TC-CEEEEECSTTCEEEEEC
T ss_pred             EECCCCCCCCCCCCC--CCCCCEEEEECCCCEEEECC-----CC-EEEEEECCCCCEEEEEC
T ss_conf             721698865742457--87788999964898999688-----99-79999616993999966


Done!