Query gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 232 No_of_seqs 136 out of 1089 Neff 7.0 Searched_HMMs 13730 Date Wed Jun 1 09:08:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780577.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2f3ga_ b.84.3.1 (A:) Glucose- 98.1 1.7E-05 1.3E-09 53.5 10.0 133 67-221 3-149 (150) 2 d1gpra_ b.84.3.1 (A:) Glucose 98.1 1.3E-05 9.3E-10 54.4 9.2 136 63-220 7-157 (158) 3 d2gpra_ b.84.3.1 (A:) Glucose 98.0 2.2E-05 1.6E-09 52.8 8.6 130 66-217 8-151 (154) 4 d1iyua_ b.84.1.1 (A:) Lipoyl d 94.8 0.037 2.7E-06 31.2 6.2 57 168-225 17-77 (79) 5 d1dcza_ b.84.1.1 (A:) Biotin c 93.5 0.094 6.8E-06 28.5 6.0 51 169-220 22-76 (77) 6 d1ghja_ b.84.1.1 (A:) Lipoyl d 93.0 0.094 6.8E-06 28.5 5.4 53 169-222 21-77 (79) 7 d1bdoa_ b.84.1.1 (A:) Biotinyl 92.9 0.08 5.8E-06 29.0 4.9 52 168-220 24-79 (80) 8 d1k8ma_ b.84.1.1 (A:) Lipoyl d 92.5 0.059 4.3E-06 29.9 3.8 55 169-224 24-82 (87) 9 d1qjoa_ b.84.1.1 (A:) Lipoyl d 92.4 0.092 6.7E-06 28.6 4.7 54 168-222 19-76 (80) 10 d1gjxa_ b.84.1.1 (A:) Lipoyl d 91.4 0.065 4.8E-06 29.6 3.0 54 169-223 21-78 (81) 11 d2f3ga_ b.84.3.1 (A:) Glucose- 90.2 0.12 8.4E-06 27.9 3.3 50 64-115 37-86 (150) 12 d2gpra_ b.84.3.1 (A:) Glucose 90.0 0.16 1.1E-05 27.0 3.9 49 64-114 43-91 (154) 13 d1y8ob1 b.84.1.1 (B:128-229) L 89.2 0.38 2.8E-05 24.4 5.4 56 170-226 26-86 (102) 14 d1laba_ b.84.1.1 (A:) Lipoyl d 89.0 0.1 7.5E-06 28.3 2.4 53 169-222 21-77 (80) 15 d1e2wa2 b.84.2.2 (A:169-232) C 87.4 0.11 8.1E-06 28.0 1.7 27 189-215 33-59 (64) 16 d1ci3m2 b.84.2.2 (M:170-231) C 85.2 0.16 1.1E-05 27.0 1.5 26 190-215 32-57 (62) 17 d1pmra_ b.84.1.1 (A:) Lipoyl d 84.1 0.066 4.8E-06 29.6 -0.8 52 170-222 23-78 (80) 18 d1hcza2 b.84.2.2 (A:168-230) C 79.6 0.32 2.4E-05 24.9 1.4 26 189-214 33-58 (63) 19 d2axtt1 f.23.34.1 (T:1-30) Pho 79.1 1.1 7.8E-05 21.4 3.9 20 41-60 10-29 (30) 20 d1tu2b2 b.84.2.2 (B:170-235) C 75.5 0.27 2E-05 25.4 0.0 26 189-214 35-60 (66) 21 d1qwya_ b.84.3.2 (A:) Peptidog 74.8 2.3 0.00017 19.2 6.6 61 110-190 179-239 (270) 22 d1vf5c2 b.84.2.2 (C:170-231) C 53.7 0.4 2.9E-05 24.3 -2.6 26 189-214 35-60 (62) 23 d2f2ha3 b.71.1.4 (A:586-665) P 42.0 8.5 0.00062 15.4 5.2 40 189-228 38-77 (80) 24 d1fdra1 b.43.4.2 (A:2-100) Fer 33.4 5.6 0.00041 16.6 0.7 65 121-186 28-97 (99) 25 d2bmwa1 b.43.4.2 (A:9-141) Fer 28.6 14 0.001 14.0 2.7 96 70-184 11-129 (133) 26 d1brwa3 d.41.3.1 (A:331-433) P 28.1 8 0.00058 15.6 0.7 20 167-186 48-67 (103) 27 d1so9a_ b.146.1.1 (A:) Cytochr 27.8 14 0.001 13.9 2.3 27 159-185 70-96 (131) 28 d1xpma2 c.95.1.2 (A:168-388) 3 27.1 13 0.00093 14.2 1.6 20 102-121 57-76 (221) 29 d1udxa1 b.117.1.1 (A:1-156) Ob 21.0 19 0.0014 13.1 2.7 54 170-231 64-117 (156) No 1 >d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} Probab=98.09 E-value=1.7e-05 Score=53.53 Aligned_cols=133 Identities=12% Similarity=0.131 Sum_probs=88.6 Q ss_pred EEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEE Q ss_conf 08863054143233115730000046872699996051101248975315451013146555650101200157068999 Q gi|254780577|r 67 LLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLV 146 (232) Q Consensus 67 ~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~ 146 (232) .++||++|++..++++.|+...+-.=+ .=+.| -|-+ +...||++|+|....-. .-.+. T Consensus 3 ~i~aP~~G~vi~L~~v~D~vFs~~~mG--~GvAI--~P~~-~~v~AP~dG~V~~v~~T-----------------~HAig 60 (150) T d2f3ga_ 3 EIIAPLSGEIVNIEDVPDVVFAEKIVG--DGIAI--KPTG-NKMVAPVDGTIGKIFET-----------------NHAFS 60 (150) T ss_dssp EEECSSSEEEECGGGSSCHHHHTTSSC--EEEEE--EECS-SEEECSSSEEEEEECTT-----------------SSEEE T ss_pred EEEEECCCEEEECCCCCCHHHHCCCCC--CEEEE--EECC-CEEEEECCEEEEEECCC-----------------CCEEE T ss_conf 999826856988231989588068843--75999--9579-92995108799998778-----------------98999 Q ss_pred EECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CCEEEEECCCEEEE Q ss_conf 970898299998515----765503651389985703866888832--------8989999639--97367622988993 Q gi|254780577|r 147 LKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DANIRVEIGQKTVA 212 (232) Q Consensus 147 ~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~~~~V~~Gq~V~a 212 (232) +++++|.-.+++++- +...-..+.+++||++++||.+.-+-+ --.+-+.+.+ +++........|++ T Consensus 61 i~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g~v~~ 140 (150) T d2f3ga_ 61 IESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTV 140 (150) T ss_dssp EEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCSEECT T ss_pred EEECCCEEEEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCEEEEEEECCHHCCEEEECCCCEEE T ss_conf 99289339999976455424884148995689998899999998599998549997169999774760203424785851 Q ss_pred EEEEEEEEC Q ss_conf 077879717 Q gi|254780577|r 213 GETVIAEFN 221 (232) Q Consensus 213 GeTila~l~ 221 (232) |++.|-.+. T Consensus 141 g~~~i~~i~ 149 (150) T d2f3ga_ 141 GETPVIRIK 149 (150) T ss_dssp TTSEEEEEE T ss_pred CCCEEEEEE T ss_conf 993799998 No 2 >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Probab=98.09 E-value=1.3e-05 Score=54.44 Aligned_cols=136 Identities=11% Similarity=0.177 Sum_probs=91.5 Q ss_pred CCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEE Q ss_conf 27660886305414323311573000004687269999605110124897531545101314655565010120015706 Q gi|254780577|r 63 IDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNER 142 (232) Q Consensus 63 ~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER 142 (232) .++..++||++|++..++++.|+.-.+-.=+ .=+.| -|-+ +...||++|+|..+.-. + T Consensus 7 ~~~~~i~aP~~G~vi~L~~V~D~vFs~~~~G--~G~aI--~P~~-~~v~AP~~G~I~~i~~T-----------------~ 64 (158) T d1gpra_ 7 IGEEVFVSPITGEIHPITDVPDQVFSGKMMG--DGFAI--LPSE-GIVVSPVRGKILNVFPT-----------------K 64 (158) T ss_dssp TSCBCCBCSSSEEEEEGGGSSSHHHHTTSSC--EEEEE--EESS-CEEECSSSEEEEEECTT-----------------S T ss_pred CCCEEEEECCCCEEEEHHHCCCHHHCCCCCC--CEEEE--EECC-CEEEEEECEEEEEECCC-----------------C T ss_conf 6987999447867988013978475557833--64999--9739-98998208599998379-----------------9 Q ss_pred EEEEEECCCCEEEEEEECCC----CCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CC-EEEEECC Q ss_conf 89999708982999985157----65503651389985703866888832--------8989999639--97-3676229 Q gi|254780577|r 143 QSLVLKTIHGNIGIVQIAGF----VARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DA-NIRVEIG 207 (232) Q Consensus 143 ~~~~~~~~~~~i~~~qiag~----~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~-~~~V~~G 207 (232) -.+.+++++|.-.+++++-- -..-..+++++||++++||.+.-+-+ --.+-+.+.+ ++ .+.+... T Consensus 65 HAigi~t~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~ 144 (158) T d1gpra_ 65 HAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKAS 144 (158) T ss_dssp SEEEEEETTSCEEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCEEEEESSCCTTCCEEECCC T ss_pred CEEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCEECCCCEEEEECHHHHHHHCCCCCEEEEEEECCCCCEEEEECC T ss_conf 79999948972999998005201489606999868999968989777589999960999734999971630635887058 Q ss_pred CEEEEEEEEEEEE Q ss_conf 8899307787971 Q gi|254780577|r 208 QKTVAGETVIAEF 220 (232) Q Consensus 208 q~V~aGeTila~l 220 (232) ..|.+|++.|-++ T Consensus 145 ~~v~~g~~~i~~v 157 (158) T d1gpra_ 145 GSVNREQEDIVKI 157 (158) T ss_dssp SEECTTCBCCEEE T ss_pred CCEECCCCEEEEE T ss_conf 8477199527997 No 3 >d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Probab=97.97 E-value=2.2e-05 Score=52.81 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=85.9 Q ss_pred CEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEE Q ss_conf 60886305414323311573000004687269999605110124897531545101314655565010120015706899 Q gi|254780577|r 66 NLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSL 145 (232) Q Consensus 66 ~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~ 145 (232) -.++||++|++..++++.|+.-.+ +--..-+.|. |-+ +...||++|+|..+.-. +-.+ T Consensus 8 ~~i~aP~~G~vi~l~~v~D~vFs~--k~~G~G~aI~--P~~-~~v~AP~dG~I~~i~~T-----------------~HAi 65 (154) T d2gpra_ 8 LKVLAPCDGTIITLDEVEDEVFKE--RMLGDGFAIN--PKS-NDFHAPVSGKLVTAFPT-----------------KHAF 65 (154) T ss_dssp EEEECSSSEEEECGGGSSCHHHHT--TSSCEEEEEE--ESS-SEEECSSCEEEEECCTT-----------------CSEE T ss_pred EEEEECCCCEEEECCCCCCHHHCC--CCCCCEEEEE--ECC-CEEEEECCEEEEEECCC-----------------CCEE T ss_conf 199962773698811088856556--8973769999--659-97998538099998778-----------------9699 Q ss_pred EEECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE------C-C-EEEEEECC--CCEEEEECCCEEE Q ss_conf 9970898299998515----765503651389985703866888832------8-9-89999639--9736762298899 Q gi|254780577|r 146 VLKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF------G-S-RVDLFLPK--DANIRVEIGQKTV 211 (232) Q Consensus 146 ~~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf------G-S-~vdi~lP~--~~~~~V~~Gq~V~ 211 (232) .+++++|.-.+++++- +-..-..+.+++||+|++||.+.-+-+ | + .+-+.+.+ +.++.+.....|+ T Consensus 66 gi~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g~V~ 145 (154) T d2gpra_ 66 GIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVK 145 (154) T ss_dssp EEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCCCSCBCCEEEC T ss_pred EEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCC T ss_conf 99918998999997636101588326899548999908999999859999863999844999986987257762468575 Q ss_pred EEEEEE Q ss_conf 307787 Q gi|254780577|r 212 AGETVI 217 (232) Q Consensus 212 aGeTil 217 (232) +|++++ T Consensus 146 ~Gd~i~ 151 (154) T d2gpra_ 146 QGDVVA 151 (154) T ss_dssp TTCEEE T ss_pred CCCEEE T ss_conf 899999 No 4 >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Probab=94.82 E-value=0.037 Score=31.21 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=45.2 Q ss_pred EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCC Q ss_conf 651389985703866888832-89899996399---73676229889930778797178778 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKP 225 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~ 225 (232) .-++++||.+++||.+..+.- ....++.-|.+ .+++++.||.|..|+ .|+.+....+ T Consensus 17 ~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~~~~ 77 (79) T d1iyua_ 17 ELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGD-AIIELEPAAG 77 (79) T ss_dssp EECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTS-EEEEEECCCS T ss_pred EEEECCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCEECCCC-EEEEEECCCC T ss_conf 999369999936851999993671789980366489998508989988999-9999946766 No 5 >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Probab=93.50 E-value=0.094 Score=28.53 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=34.5 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 51389985703866888832-89899996399---736762298899307787971 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) .++++||++++||.+..+.= ...+++.-|.+ .+++|+.||.|..|+ +|.++ T Consensus 22 ~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~-~L~~i 76 (77) T d1dcza_ 22 ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQ-GLIKI 76 (77) T ss_dssp ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTS-EEEEE T ss_pred EECCCCCEEECCCEEEEEECCCCCEEEEECCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 99679999958976999993675699996789999877637999989999-99993 No 6 >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Probab=92.97 E-value=0.094 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=41.7 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 51389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) -++++||.+++||.+--+.- ...+++.-|.+ .+++++.||.|..|+ +||.+.+ T Consensus 21 w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~-~l~~i~~ 77 (79) T d1ghja_ 21 WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGE-LLGKLTE 77 (79) T ss_dssp CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTC-EEEEECC T ss_pred EECCCCCEEEECCCEEEEECCCEEEEEEECEEEEEEEEECCCCCEECCCC-EEEEEEC T ss_conf 98389999960866999985723999982404999999819999988999-9999947 No 7 >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Probab=92.92 E-value=0.08 Score=29.00 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=39.3 Q ss_pred EEECCCCCEEECCCEEEEEEECC-EEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 65138998570386688883289-899996399---736762298899307787971 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRFGS-RVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irfGS-~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) ..++++||++++||.++.+.--- ..++.-|.+ .+++|+.||.|..|+ +|..+ T Consensus 24 ~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~-~L~~i 79 (80) T d1bdoa_ 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDE-PLVVI 79 (80) T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTC-EEEEE T ss_pred CEECCCCCEEECCCEEEEEECCCCCEEEECCCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 809127985908999999991760289995898499899968979989999-99997 No 8 >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Probab=92.50 E-value=0.059 Score=29.89 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=42.7 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 51389985703866888832-89899996399---7367622988993077879717877 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) -+.++||.+++||.+.-+.- -..+++.-|.+ .++.++.||.|..|+ .|+.+.... T Consensus 24 w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~-~l~~i~~~~ 82 (87) T d1k8ma_ 24 WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGK-PLVDIETEA 82 (87) T ss_dssp ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTS-EEEEEECSC T ss_pred EECCCCCEEECCCEEEEEECCCCEEEEEECCCEEEEEEEECCCCEECCCC-EEEEEECCC T ss_conf 98179999916998999984671688990899999999858999978999-999997677 No 9 >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Probab=92.38 E-value=0.092 Score=28.59 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=42.5 Q ss_pred EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 651389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) .-+.++|+.+++||.+..+.- ...+++.-|.+ .+++++.||.|..|+ +|+.+.. T Consensus 19 ~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~ 76 (80) T d1qjoa_ 19 EVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEV 76 (80) T ss_dssp ECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTC-CCEEEES T ss_pred EEEECCCCEECCCCEEEEEECCCCCCEEECCEEEEEEEEEECCCCEECCCC-EEEEEEC T ss_conf 998179899979998999995766623838706799999828999988999-9999965 No 10 >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Probab=91.41 E-value=0.065 Score=29.58 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=41.7 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC Q ss_conf 51389985703866888832-89899996399---736762298899307787971787 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~ 223 (232) -++++||.+++||.+..+.- ...+++.-|.+ .+++++.||.|..|+ .|+.+... T Consensus 21 w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~-~l~~ie~~ 78 (81) T d1gjxa_ 21 VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGG-LIVVVEAE 78 (81) T ss_dssp ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSS-CCCEECCS T ss_pred EEECCCCEECCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCCEECCCC-EEEEEECC T ss_conf 98189899979998999994774879874325899999808989988999-99999446 No 11 >d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} Probab=90.16 E-value=0.12 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=22.5 Q ss_pred CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEEC Q ss_conf 7660886305414323311573000004687269999605110124897531 Q gi|254780577|r 64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIG 115 (232) Q Consensus 64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~ 115 (232) .++.++||+||+|+.+-...- ...+...+...+-|-+..--|..+--+++ T Consensus 37 ~~~~v~AP~dG~V~~v~~T~H--Aigi~t~~G~eiLIHiGidTV~L~G~gF~ 86 (150) T d2f3ga_ 37 TGNKMVAPVDGTIGKIFETNH--AFSIESDSGVELFVHFGIDTVELKGEGFK 86 (150) T ss_dssp CSSEEECSSSEEEEEECTTSS--EEEEEETTSCEEEEECSBSGGGGTTTTEE T ss_pred CCCEEEEECCEEEEEECCCCC--EEEEEECCCEEEEEEECCCHHHCCCCCEE T ss_conf 799299510879999877898--99999289339999976455424884148 No 12 >d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Probab=89.96 E-value=0.16 Score=27.04 Aligned_cols=49 Identities=6% Similarity=0.150 Sum_probs=21.4 Q ss_pred CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 766088630541432331157300000468726999960511012489753 Q gi|254780577|r 64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPI 114 (232) Q Consensus 64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~ 114 (232) .++.++||+||+|+.+-...- ...+...+...+-|-...--|..+--+. T Consensus 43 ~~~~v~AP~dG~I~~i~~T~H--Aigi~t~~G~eiLIHiGidTV~L~G~gF 91 (154) T d2gpra_ 43 KSNDFHAPVSGKLVTAFPTKH--AFGIQTKSGVEILLHIGLDTVSLDGNGF 91 (154) T ss_dssp SSSEEECSSCEEEEECCTTCS--EEEEECTTSCEEEEECSSSGGGGTTCSE T ss_pred CCCEEEEECCEEEEEECCCCC--EEEEEECCCCEEEEEECCCCCCCCCCEE T ss_conf 599799853809999877896--9999918998999997636101588326 No 13 >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Probab=89.18 E-value=0.38 Score=24.44 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=40.6 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCC-EEEEEEEEEEEECCCCCC Q ss_conf 1389985703866888832-89899996399---736762298-899307787971787787 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQ-KTVAGETVIAEFNSTKPP 226 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq-~V~aGeTila~l~~~~~~ 226 (232) .+++||.+++||.+--+.= -..+++.-|.+ .++.++.|| .|..|+ +||.+.+...+ T Consensus 26 ~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~-~ia~i~~~~~~ 86 (102) T d1y8ob1 26 EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEAD 86 (102) T ss_dssp CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC-EEEEEESSGGG T ss_pred EECCCCEEECCCCEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCCC T ss_conf 90899999637529999848478988528768999989746997974999-89999557766 No 14 >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Probab=89.04 E-value=0.1 Score=28.25 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=39.7 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 51389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) -++++||.+++||.+--+.- -..+++.-|.+ .++.++.||.|..|+ +|+.+.. T Consensus 21 w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~-~l~~ie~ 77 (80) T d1laba_ 21 WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQ-TLITLDA 77 (80) T ss_dssp CCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSS-CSBCBBC T ss_pred EEECCCCEEEECCCEEEEECCCEEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEEC T ss_conf 99179999960727999982647999985899999999858989978999-9999946 No 15 >d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=87.35 E-value=0.11 Score=28.04 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=16.2 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEE Q ss_conf 898999963997367622988993077 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGET 215 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeT 215 (232) |-.+...+|.+.++.|+.||+|++|+. T Consensus 33 Ge~~~y~Ip~g~~l~V~eGd~V~~G~~ 59 (64) T d1e2wa2 33 GEVVVDKIPAGPDLIVKEGQTVQADQP 59 (64) T ss_dssp SCEEEEEECSSSCBCCCTTCEECTTCB T ss_pred CCEEEEECCCCCEEEECCCCEEECCCC T ss_conf 999999747998688889999958973 No 16 >d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]} Probab=85.18 E-value=0.16 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=18.1 Q ss_pred CEEEEEECCCCEEEEECCCEEEEEEE Q ss_conf 98999963997367622988993077 Q gi|254780577|r 190 SRVDLFLPKDANIRVEIGQKTVAGET 215 (232) Q Consensus 190 S~vdi~lP~~~~~~V~~Gq~V~aGeT 215 (232) -..+..+|.+.++.|+.||+|++|+. T Consensus 32 ~~~~y~Ip~g~~l~V~eGd~V~aG~~ 57 (62) T d1ci3m2 32 TTIVDKIPAGPELIVSEGEEVAAGAA 57 (62) T ss_dssp CEEEEEECSSSCBCCCTTCEECTTCB T ss_pred CEEEEECCCCCEEEECCCCEEECCCC T ss_conf 89999868999878879999958971 No 17 >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Probab=84.12 E-value=0.066 Score=29.57 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=38.5 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 1389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) ++++|+.+++||.+--+.- -..+++.-|.+ .+++++.||+|..|+ +||++.+ T Consensus 23 ~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~-~l~~i~e 78 (80) T d1pmra_ 23 HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQ-ILGRLRE 78 (80) T ss_dssp CCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSS-EEEBCCC T ss_pred EECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEEC T ss_conf 9079999927998999985755999951578999998768999987999-9999968 No 18 >d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip (Brassica rapa) [TaxId: 3711]} Probab=79.57 E-value=0.32 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=21.6 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEE Q ss_conf 89899996399736762298899307 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGE 214 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGe 214 (232) |..|.=.+|.+-++.|++||.|++|+ T Consensus 33 g~~v~~~IP~GpeLiVseG~~V~adq 58 (63) T d1hcza2 33 ERQVIDIIPRGLELLVSEGESIKLDQ 58 (63) T ss_dssp TEEEEEEECTTCCBCCCTTCEECTTC T ss_pred CCEEEEECCCCCEEEECCCCEEECCC T ss_conf 97888861999858980899997797 No 19 >d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]} Probab=79.12 E-value=1.1 Score=21.42 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999971388876 Q gi|254780577|r 41 WFGAILTVWCAYFFRDPERV 60 (232) Q Consensus 41 ~~~~~~~l~~~~FFRdP~R~ 60 (232) +-+++-+.|++-|||.|.|. T Consensus 10 fac~i~lfffaiffreppri 29 (30) T d2axtt1 10 FACIIALFFFAIFFREPPRI 29 (30) T ss_dssp HHHHHHHHHHHHHTSCCCCC T ss_pred HHHHHHHHHHHHHHCCCCCC T ss_conf 99999999999984489888 No 20 >d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena sp., strain PCC 7120 [TaxId: 1167]} Probab=75.50 E-value=0.27 Score=25.43 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=17.4 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEE Q ss_conf 89899996399736762298899307 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGE 214 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGe 214 (232) |..|.-.+|.+-++.|++||.|++|+ T Consensus 35 G~~v~e~IP~GpeLiVseG~~Vkadq 60 (66) T d1tu2b2 35 GEVVSDTIPAGPELIVSEGQAVTAGD 60 (66) T ss_dssp TEEECCEECSSCCBSCCTTCEECTTC T ss_pred CCEEEEECCCCCEEEECCCCEEECCC T ss_conf 98987751899868982898896698 No 21 >d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]} Probab=74.84 E-value=2.3 Score=19.24 Aligned_cols=61 Identities=21% Similarity=0.136 Sum_probs=34.6 Q ss_pred EEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEEEC Q ss_conf 89753154510131465556501012001570689999708982999985157655036513899857038668888328 Q gi|254780577|r 110 NRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRFG 189 (232) Q Consensus 110 ~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~irfG 189 (232) .+|+.+|+|....+... .--..+.++..++.... .++-+ .++ .+++||.|++||.+|.. | T Consensus 179 V~A~~dG~V~~ag~~~~-------------g~G~~V~I~h~~g~~~t-~Y~hl--~~~--~V~~Gq~V~~Gq~IG~v--G 238 (270) T d1qwya_ 179 VYSLTDGTVVQAGWSNY-------------GGGNQVTIKEANSNNYQ-WYMHN--NRL--TVSAGDKVKAGDQIAYS--G 238 (270) T ss_dssp EECSSSEEEEEEEEETT-------------TTEEEEEEEETTSSEEE-EEEEE--SEE--CCCTTCEECTTCEEEEC--C T ss_pred EEEEECEEEEEEEECCC-------------CCCEEEEEEECCCCEEE-EEEEC--CEE--ECCCCCEECCCCEEEEE--C T ss_conf 99410879999897567-------------99869999708988799-99837--721--13889999868999996--7 Q ss_pred C Q ss_conf 9 Q gi|254780577|r 190 S 190 (232) Q Consensus 190 S 190 (232) + T Consensus 239 s 239 (270) T d1qwya_ 239 S 239 (270) T ss_dssp C T ss_pred C T ss_conf 8 No 22 >d1vf5c2 b.84.2.2 (C:170-231) Cytochrome f, small domain {Mastigocladus laminosus [TaxId: 83541]} Probab=53.75 E-value=0.4 Score=24.33 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=20.7 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEE Q ss_conf 89899996399736762298899307 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGE 214 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGe 214 (232) |..|.=.+|.+-++.|++||.|++|+ T Consensus 35 G~~v~~~IP~GpeLiVseG~~Vkadq 60 (62) T d1vf5c2 35 GKTVVDTIPAGPELIVSEGQAVKAGE 60 (62) T ss_dssp SSCCCCCCCSSSCCCCCTTCCCTTSC T ss_pred CCEEEEEECCCCEEEECCCCEEECCC T ss_conf 99988740899858973898885798 No 23 >d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3 {Escherichia coli [TaxId: 562]} Probab=42.00 E-value=8.5 Score=15.40 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=26.5 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCCE Q ss_conf 8989999639973676229889930778797178778720 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLL 228 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~~~~~ 228 (232) |..+++|||++.=.+...|+++.+|+++--..+-.+-|+. T Consensus 38 ~~~~~vylP~G~W~d~~t~~~~~g~~~~~~~~~l~~iPvf 77 (80) T d2f2ha3 38 AGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVY 77 (80) T ss_dssp SCEEEEEECSSEEEETTTCCEEECSEEEEEECCTTCCCEE T ss_pred CCEEEEECCCCEEEECCCCCEEECCEEEEEECCCCCCCEE T ss_conf 9579999288669987899899899899996898655879 No 24 >d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} Probab=33.41 E-value=5.6 Score=16.60 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=34.3 Q ss_pred EEECCCCCCCHHHCCCCCCCEEEEEEEECC-CCE--EEEEEEC-CCCCCEEEEECCCCCEEECCC-EEEEE Q ss_conf 131465556501012001570689999708-982--9999851-576550365138998570386-68888 Q gi|254780577|r 121 SVHRNGQFMNAALDKASEQNERQSLVLKTI-HGN--IGIVQIA-GFVARRIVCWVKPTMKVEAGM-RFGII 186 (232) Q Consensus 121 ~~~~~G~~~~a~~~~~~~~NER~~~~~~~~-~~~--i~~~qia-g~~arrI~~~~~~g~~v~~G~-r~G~i 186 (232) ..|.+|+|.....+.....-.|.+...+.. ++. +.++.+. |.+...+ +..++||.+.-.. ..|+| T Consensus 28 ~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~~~~~~~vk~~~~G~~S~~l-~~lk~GD~v~v~gP~~g~F 97 (99) T d1fdra1 28 LPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRL-AALKPGDEVQVVSEAAGFF 97 (99) T ss_dssp CCCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCTTCSSHHHH-HTCCTTCEEEEESSCBCCC T ss_pred CCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCEEEEEEEEECCCHHHHHH-HHCCCCCEEEECCCCCCEE T ss_conf 888998388834677898187888667898774037999996681778889-6599999999875889989 No 25 >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Probab=28.61 E-value=14 Score=13.99 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=44.2 Q ss_pred EECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCC----CEEEEE Q ss_conf 6305414323311573000004687269999605110124897531545101314655565010120015----706899 Q gi|254780577|r 70 SPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQ----NERQSL 145 (232) Q Consensus 70 SPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~----NER~~~ 145 (232) .|--++|+....+..+. +-.+++......+|. ...|.+|++.....+..... ..|.+. T Consensus 11 ~P~~a~V~~~~~lt~~~----------------~~~~v~~i~~~~~~~--~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YS 72 (133) T d2bmwa1 11 APFIGKVISNEPLVKEG----------------GIGIVQHIKFDLTGG--NLKYIEGQSIGIIPPGVDKNGKPEKLRLYS 72 (133) T ss_dssp BCEEEEEEEEEECSCTT----------------CSSCEEEEEEECTTS--CCCCCTTCEEEEECSSBCTTSCBCCCEEEE T ss_pred CCEEEEEEEEEECCCCC----------------CCCEEEEEEECCCCC--CCCCCCCCEEEEEECCCCCCCCCCCEEEEE T ss_conf 98688998789903789----------------874299999715886--377559989999842666566544105554 Q ss_pred EEECCC------CE--EEEEE-----------ECCCCCCEEEEECCCCCEEECCCEEE Q ss_conf 997089------82--99998-----------51576550365138998570386688 Q gi|254780577|r 146 VLKTIH------GN--IGIVQ-----------IAGFVARRIVCWVKPTMKVEAGMRFG 184 (232) Q Consensus 146 ~~~~~~------~~--i~~~q-----------iag~~arrI~~~~~~g~~v~~G~r~G 184 (232) .-++.. .. +.++. ..|.....+ +..++||++..--.+| T Consensus 73 ias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL-~~lk~GD~v~v~GP~G 129 (133) T d2bmwa1 73 IASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL-THIEPGSEVKITGPVG 129 (133) T ss_dssp BCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHH-HTCCTTCEEEEEEEEC T ss_pred ECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEHHHH-HHCCCCCEEEEECCCC T ss_conf 04787677887657999998545566556777772822647-5289989999957765 No 26 >d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Probab=28.06 E-value=8 Score=15.60 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=12.2 Q ss_pred EEEECCCCCEEECCCEEEEE Q ss_conf 36513899857038668888 Q gi|254780577|r 167 IVCWVKPTMKVEAGMRFGII 186 (232) Q Consensus 167 I~~~~~~g~~v~~G~r~G~i 186 (232) |....+.|+.|++||.+..+ T Consensus 48 i~l~~k~Gd~V~~Gd~l~~i 67 (103) T d1brwa3 48 IVLHKKIGDRVQKGEALATI 67 (103) T ss_dssp EEESCCTTCEECTTCEEEEE T ss_pred EEEECCCCCEECCCCEEEEE T ss_conf 59962689997699949999 No 27 >d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]} Probab=27.82 E-value=14 Score=13.90 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.9 Q ss_pred ECCCCCCEEEEECCCCCEEECCCEEEE Q ss_conf 515765503651389985703866888 Q gi|254780577|r 159 IAGFVARRIVCWVKPTMKVEAGMRFGI 185 (232) Q Consensus 159 iag~~arrI~~~~~~g~~v~~G~r~G~ 185 (232) -||.....|.|++.+.|.++.||..-| T Consensus 70 ~a~~Yf~KieCFCF~~Q~L~pgE~~~m 96 (131) T d1so9a_ 70 AAGAYFNKVQCFCFTETTLEPGEEMEM 96 (131) T ss_dssp SCSTTBTTSCCSSCSCCEECTTCEEEE T ss_pred HHHHHEECCCEEEEEEEEECCCCEEEE T ss_conf 976440547288775169789988987 No 28 >d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Probab=27.08 E-value=13 Score=14.21 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=15.3 Q ss_pred ECCCCCCEEEEEECCEEEEE Q ss_conf 05110124897531545101 Q gi|254780577|r 102 MNIFDCHVNRMPIGGEVIKS 121 (232) Q Consensus 102 ls~~dvH~~raP~~G~V~~~ 121 (232) ++-||..+.|.|...-+... T Consensus 57 ~~dfd~~~fH~P~~km~~ka 76 (221) T d1xpma2 57 LADFASLCFHVPFTKMGKKA 76 (221) T ss_dssp GGGCSEEEECCSSHHHHHHH T ss_pred HHHHHEEEEECCCHHHHHHH T ss_conf 55522598414841558999 No 29 >d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=20.99 E-value=19 Score=13.05 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=31.3 Q ss_pred ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCCEEEC Q ss_conf 13899857038668888328989999639973676229889930778797178778720004 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLLVCR 231 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irfGS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~~~~~~~~ 231 (232) ....|..=....+.| +-|-.+.|-+|.++.+.-.. -+ .+||.|.+...+++||+ T Consensus 64 ~A~~G~~G~~~~~~G--~~G~D~~I~VP~GT~V~~~~-----~~-~~i~dl~~~g~~~lva~ 117 (156) T d1udxa1 64 KAEDGEHGRGSQQHG--RGGEDLVIEVPRGTRVFDAD-----TG-ELLADLTEEGQTVLVAR 117 (156) T ss_dssp ECCCCCCCBTTTBCC--CCCCCEEEEECSSEEEEETT-----TC-CEEEEECSTTCEEEEEC T ss_pred EECCCCCCCCCCCCC--CCCCCEEEEECCCCEEEECC-----CC-EEEEEECCCCCEEEEEC T ss_conf 721698865742457--87788999964898999688-----99-79999616993999966 Done!