RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780577|ref|YP_003064990.1| phosphatidylserine
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)



>1qle_C Cytochrome C oxidase polypeptide III;
          oxidoreductase/immune system, complex
          (oxidoreductase/antibody), electron transport; HET: HEA
          PC1; 3.0A {Paracoccus denitrificans} (C:1-77)
          Length = 77

 Score = 29.7 bits (67), Expect = 0.36
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 15/53 (28%)

Query: 19 WPFIVSFAAFTIIIG--MW------------SYGLLWFGAILTVWCAYF-FRD 56
          WPF  +  AF ++ G   W               +   G +  ++  +  + D
Sbjct: 16 WPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWWAD 68


>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel
           hybrid motif, transferase; 2.30A {Escherichia coli}
           (A:83-190)
          Length = 108

 Score = 28.5 bits (64), Expect = 0.77
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 171 VKPTMKV--EAGMRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIA 218
           ++P +K+    G    I         FLP  A +++E G +  +G+  +A
Sbjct: 53  LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD-TLA 101


>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase
           holoenzyme, streptolydigin, antibiotic, transcription
           regulation; HET: STD; 2.40A {Thermus thermophilus}
           (D:165-395)
          Length = 231

 Score = 26.9 bits (59), Expect = 2.2
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 174 TMKVEAGMRFGIIRF--GSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLL 228
             + E    +  +        D  +    N+ V  G +  AG+ ++A  +  +  + 
Sbjct: 159 EAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIA 215


>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain,
          reaction mechanism, sustrate binding, oxidoreductase;
          HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma}
          (A:142-227)
          Length = 86

 Score = 26.2 bits (58), Expect = 3.8
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 6/40 (15%)

Query: 5  QAIRKILVPIHFHGWPFIV------SFAAFTIIIGMWSYG 38
          +++ K++  +      +I+      S   + I  G  S G
Sbjct: 15 ESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPG 54


>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
           {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
           (A:236-484)
          Length = 249

 Score = 26.0 bits (57), Expect = 4.3
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 182 RFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGET-VIAEFNSTKPPLLVC 230
           R+ I+ F S  DL +P +  I + +  +T   E+  I  +++ +  ++V 
Sbjct: 185 RYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQ 234


>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-
          2S] cluster, rieske, oxidoreductase; HET: MGD; 1.64A
          {Alcaligenes faecalis} (B:1-62,B:100-133)
          Length = 96

 Score = 25.5 bits (56), Expect = 5.8
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 15/58 (25%)

Query: 46 LTVWCAYFFRDPERVTPIDPNLLI---SPADGLV---------SAICEMSPPPELELE 91
          L       F  P+  +P    + +   +P  G V         S +C  +  P + L 
Sbjct: 17 LAANEPVSFTYPDTSSP---CVAVKLGAPVPGGVGPDDDIVAYSVLCTHADLPRVLLR 71


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.142    0.448 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,899,171
Number of extensions: 87078
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 17
Length of query: 232
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 146
Effective length of database: 2,048,819
Effective search space: 299127574
Effective search space used: 299127574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)