RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780577|ref|YP_003064990.1| phosphatidylserine
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
(232 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 31.8 bits (72), Expect = 0.14
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 73/141 (51%)
Query: 144 SLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAG-MR--F--------GII------ 186
S L IG++Q+A +V + + + G +R G++
Sbjct: 237 SCPL------IGVIQLAHYV---VTAKL---LGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 187 ------RF--------------GSRV-----DLFLP----KDANIRVEIGQKT------V 211
F G R + LP +D+ +E + +
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS---LENNEGVPSPMLSI 341
Query: 212 AG------ETVIAEFNSTKPP 226
+ + + + NS P
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPA 362
Score = 28.8 bits (64), Expect = 1.2
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 52/153 (33%)
Query: 66 NLLIS-PAD---GLVSAICEMSPPPELELENEVML--RLSIFMNIFDCHVNRMPIGGEVI 119
NL++S P GL + + P L+ ++ + R F N F +P+
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKLKFSNRF------LPV----- 423
Query: 120 KSV--HRNGQFMNAALDKASEQNERQSLVLKT----I---H-----------GNIGIVQI 159
+ H + A D ++ + ++ I G+I +I
Sbjct: 424 -ASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERI 479
Query: 160 AGFVARRIVCWVKPTMKVEAGMRFG---IIRFG 189
+ R V W E +F I+ FG
Sbjct: 480 VDCIIRLPVKW-------ETTTQFKATHILDFG 505
Score = 27.2 bits (60), Expect = 3.3
Identities = 21/154 (13%), Positives = 40/154 (25%), Gaps = 62/154 (40%)
Query: 10 ILVPIHFHGWPFIVSFAAFTIIIGMWSYGLLWFGAILTVWCAYFFRDPERVTPIDPNLLI 69
+LVP F A L F + L
Sbjct: 20 LLVPTASF-------FIASQ----------LQ---------EQFNKI-----------LP 42
Query: 70 SPADGLVSAICEMSPPPELELENEVMLRLSIFMN-IFDCHVNRMPIGG--EVIKSVHR-- 124
P +G + E + P EL + F+ + V +G +V+
Sbjct: 43 EPTEGFAADD-EPTTPAEL---------VGKFLGYVSS-LVEPSKVGQFDQVLNLCLTEF 91
Query: 125 NGQFMN--------AALDKASEQNERQ-SLVLKT 149
++ A L + ++ + ++K
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C*
2eil_C* 2eim_C* 2ein_C* 2zxw_C* 2occ_C* 1oco_C* 1occ_C*
1ocz_C* 1ocr_C* 2dys_C*
Length = 261
Score = 31.2 bits (70), Expect = 0.18
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 19 WPFIVSFAAFTIIIGM------WSYGLLWFGAILTVWCAY-FFRDPERVTPIDPNLLISP 71
WP + +A + G+ S LL G + Y ++RD R + + +
Sbjct: 16 WPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAV 75
Query: 72 ADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVI 119
GL + L + +EV+ F + + P G
Sbjct: 76 QKGLRYGMI-------LFIISEVLFFTGFFWAFYHSSLAPTPELGGCW 116
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA
PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1
PDB: 1m57_C*
Length = 266
Score = 30.0 bits (67), Expect = 0.49
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 19 WPFIVSFAAFTIIIGM------WSYGLLWFGAILTVWCAYFF 54
WPF+ S AF ++ G + G ++ ++ + +
Sbjct: 17 WPFMASVGAFVMLFGAVLWMHGSGPWMGLIGLVVVLYTMFGW 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 0.51
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 12/41 (29%)
Query: 141 ERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGM 181
E+Q+L K + ++ + A A P + ++A M
Sbjct: 18 EKQAL--KKLQASLKLY--ADDSA--------PALAIKATM 46
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune
system, complex (oxidoreductase/antibody), electron
transport; HET: HEA PC1; 3.0A {Paracoccus
denitrificans} SCOP: f.25.1.1
Length = 273
Score = 28.1 bits (62), Expect = 1.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 19 WPFIVSFAAFTIIIG--MWSYGLLWFG 43
WPF + AF ++ G W G+ +FG
Sbjct: 16 WPFFGAIGAFVMLTGAVAWMKGITFFG 42
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid
motif, transferase; 2.30A {Escherichia coli}
Length = 190
Score = 26.5 bits (58), Expect = 4.9
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 171 VKPTMKVEAGMRFGIIRFGSRVDL--FLPKDANIRVEIGQKTVAGETVIA 218
++P +K+ ++ G+ + FLP A +++E G + +G+ +A
Sbjct: 135 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD-TLA 183
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange,
photosynthesis, light- harvesting, GXXXG motif,
dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Length = 77
Score = 26.5 bits (58), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 25 FAAFTIIIGMWSYGLLWFGAILTVWCAYFFRDPERVTPIDPNLLISPADGLVSAI 79
+ AF ++ G G ++FG +L + FFR R+ PI N +PA + A+
Sbjct: 21 WVAFQMMKGAGWAGGVFFGTLLLIG---FFRVVGRMLPIQENQ--APAPNITGAL 70
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 26.6 bits (58), Expect = 5.6
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 182 RFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGET-VIAEFNSTKPPLLVC 230
R+ I+ F S DL +P + I + + +T E+ I +++ + ++V
Sbjct: 420 RYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQ 469
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 26.1 bits (57), Expect = 7.6
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 167 IVCW-VKPTMKVEAGMRFGIIRFGSR-VDLFLPKDAN---IRVEIGQKTVAGETVIAEF 220
+ W K K+ G I + + ++ I V G + V T +
Sbjct: 44 VQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCII 102
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme,
oxidoreductase, toxin; 2.50A {Chlamydia trachomatis}
SCOP: a.132.1.4
Length = 231
Score = 25.6 bits (55), Expect = 9.2
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 1 MNLIQAIRKILVPIHFHGWPFIVSFAAFTIIIGMWSYGLLWFGAILTVWCAYF 53
MN + + I+ H F V ++ + + + + Y
Sbjct: 6 MNFLDQLDLIIQNKHMLEHTFYVKWSKGELTKEQLQAYAKDYYLHIKAFPKYL 58
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.328 0.142 0.448
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,127,914
Number of extensions: 99119
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 21
Length of query: 232
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 143
Effective length of database: 3,535,514
Effective search space: 505578502
Effective search space used: 505578502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.4 bits)