RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (232 letters) >d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]} Length = 259 Score = 30.8 bits (69), Expect = 0.099 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 14/107 (13%) Query: 19 WPFIVSFAAFTIIIGM------WSYGLLWFGAILTVWCAY-FFRDPERVTPIDPNLLISP 71 WP + +A + G+ S LL G + Y ++RD R + + + Sbjct: 14 WPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAV 73 Query: 72 ADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEV 118 GL + L + +EV+ F + + P G Sbjct: 74 QKGLRYGMI-------LFIISEVLFFTGFFWAFYHSSLAPTPELGGC 113 >d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]} Length = 265 Score = 30.1 bits (67), Expect = 0.16 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 7/45 (15%) Query: 19 WPFIVSFAAFTIIIGM------WSYGLLWFGAILTVWCAYF-FRD 56 WPF+ S AF ++ G + G ++ ++ + + D Sbjct: 16 WPFMASVGAFVMLFGAVLWMHGSGPWMGLIGLVVVLYTMFGWWSD 60 >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Length = 289 Score = 25.0 bits (53), Expect = 6.1 Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 12/98 (12%) Query: 1 MNLIQAIRKILVPIHFHGWPFIVSFAAFTIIIGM-WSYGLLWFGAILTVWC--------- 50 + ++A + +L P G + + + G A L Sbjct: 180 RDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLE 239 Query: 51 --AYFFRDPERVTPIDPNLLISPADGLVSAICEMSPPP 86 D L+ AD +V + + Sbjct: 240 VFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRPVRV 277 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.328 0.142 0.448 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 921,791 Number of extensions: 42967 Number of successful extensions: 130 Number of sequences better than 10.0: 1 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 9 Length of query: 232 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,281,736 Effective search space: 192260400 Effective search space used: 192260400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 51 (23.7 bits)