RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780577|ref|YP_003064990.1| phosphatidylserine
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)



>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit
           III {Cow (Bos taurus) [TaxId: 9913]}
          Length = 259

 Score = 30.8 bits (69), Expect = 0.099
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 14/107 (13%)

Query: 19  WPFIVSFAAFTIIIGM------WSYGLLWFGAILTVWCAY-FFRDPERVTPIDPNLLISP 71
           WP   + +A  +  G+       S  LL  G    +   Y ++RD  R +    +   + 
Sbjct: 14  WPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAV 73

Query: 72  ADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEV 118
             GL   +        L + +EV+     F   +   +   P  G  
Sbjct: 74  QKGLRYGMI-------LFIISEVLFFTGFFWAFYHSSLAPTPELGGC 113


>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase
          subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 265

 Score = 30.1 bits (67), Expect = 0.16
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 19 WPFIVSFAAFTIIIGM------WSYGLLWFGAILTVWCAYF-FRD 56
          WPF+ S  AF ++ G           +   G ++ ++  +  + D
Sbjct: 16 WPFMASVGAFVMLFGAVLWMHGSGPWMGLIGLVVVLYTMFGWWSD 60


>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
           catalytic domain {Pseudomonas sp. [TaxId: 306]}
          Length = 289

 Score = 25.0 bits (53), Expect = 6.1
 Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 12/98 (12%)

Query: 1   MNLIQAIRKILVPIHFHGWPFIVSFAAFTIIIGM-WSYGLLWFGAILTVWC--------- 50
            + ++A + +L P    G     + +       +    G     A L             
Sbjct: 180 RDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLE 239

Query: 51  --AYFFRDPERVTPIDPNLLISPADGLVSAICEMSPPP 86
                          D   L+  AD +V  + +     
Sbjct: 240 VFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRPVRV 277


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.448 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 921,791
Number of extensions: 42967
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 9
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)