Query gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 298 No_of_seqs 175 out of 1932 Neff 7.6 Searched_HMMs 39220 Date Sun May 29 22:12:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780578.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 COG1183 PssA Phosphatidylserin 100.0 0 0 304.7 20.8 224 52-284 6-233 (234) 2 TIGR00473 pssA CDP-diacylglyce 100.0 5.7E-41 1.4E-45 252.1 12.8 164 62-230 1-174 (174) 3 pfam01066 CDP-OH_P_transf CDP- 99.7 1.8E-16 4.7E-21 112.3 10.0 77 55-131 2-78 (96) 4 COG0558 PgsA Phosphatidylglyce 99.6 6E-15 1.5E-19 103.7 11.6 84 53-136 10-96 (192) 5 PRK10832 phosphatidylglyceroph 99.6 4.2E-14 1.1E-18 98.9 11.5 71 54-124 2-75 (182) 6 KOG1617 consensus 99.6 4.4E-15 1.1E-19 104.5 6.2 79 50-128 63-141 (243) 7 PTZ00307 ethanolamine phosphot 99.5 2E-12 5E-17 89.3 14.8 79 55-133 60-149 (417) 8 KOG2877 consensus 99.5 5.4E-13 1.4E-17 92.5 11.5 96 41-138 38-144 (389) 9 TIGR00560 pgsA CDP-diacylglyce 99.4 7.9E-12 2E-16 85.9 9.9 77 56-132 2-98 (217) 10 COG5050 EPT1 sn-1,2-diacylglyc 99.2 1.2E-10 3E-15 79.2 10.0 92 47-139 37-139 (384) 11 KOG3240 consensus 99.0 1.6E-08 4E-13 67.1 12.2 77 55-132 13-89 (218) 12 PRK10921 twin-arginine protein 89.8 1.2 3.1E-05 22.1 7.2 34 263-296 220-253 (255) 13 pfam08009 CDP-OH_P_tran_2 CDP- 89.7 0.38 9.7E-06 24.9 3.3 36 239-274 4-39 (39) 14 PRK10478 putative fructose-lik 81.0 1.4 3.5E-05 21.8 2.6 36 91-127 106-141 (359) 15 COG4512 AgrB Membrane protein 78.4 4.3 0.00011 19.0 8.1 84 206-289 103-193 (198) 16 PRK10746 putative transport pr 73.9 5.7 0.00015 18.2 9.2 30 264-293 432-461 (461) 17 PRK10644 arginine:agmatin anti 69.8 7.1 0.00018 17.7 9.1 41 251-292 399-439 (445) 18 PRK10655 potE putrescine trans 64.3 9.2 0.00023 17.1 8.3 36 254-290 402-437 (438) 19 PRK09509 fieF ferrous iron eff 51.2 16 0.0004 15.8 10.4 24 104-127 33-56 (300) 20 PRK05951 ubiA prenyltransferas 48.2 17 0.00044 15.5 16.2 83 207-289 173-267 (296) 21 PRK08457 motB flagellar motor 45.9 18 0.00045 15.5 2.5 38 102-139 2-41 (251) 22 KOG3059 consensus 41.1 23 0.00058 14.8 15.1 121 2-129 2-134 (292) 23 TIGR01477 RIFIN variant surfac 39.0 24 0.00062 14.6 5.1 26 263-288 360-385 (395) 24 COG2966 Uncharacterized conser 36.9 26 0.00067 14.5 4.5 55 52-108 120-174 (250) 25 TIGR01478 STEVOR variant surfa 33.3 30 0.00077 14.1 4.0 38 95-132 155-194 (315) 26 PRK05342 clpX ATP-dependent pr 32.0 4 0.0001 19.1 -2.6 49 85-133 239-302 (411) 27 COG1219 ClpX ATP-dependent pro 30.9 9.6 0.00025 16.9 -0.8 50 84-133 226-291 (408) 28 PRK09038 flagellar motor prote 30.9 33 0.00085 13.9 3.1 39 102-140 3-43 (285) 29 pfam05297 Herpes_LMP1 Herpesvi 29.9 35 0.00088 13.8 11.6 49 246-296 151-200 (382) 30 pfam05646 consensus 29.7 35 0.00089 13.8 6.2 76 53-134 22-97 (110) 31 PRK10245 adrA diguanylate cycl 29.3 36 0.00091 13.7 10.0 97 17-129 14-114 (371) 32 PRK03557 zinc transporter ZitB 28.9 36 0.00092 13.7 9.8 14 115-128 52-65 (312) 33 COG0053 MMT1 Predicted Co/Zn/C 28.7 36 0.00093 13.7 10.0 26 103-128 34-59 (304) 34 pfam03248 Rer1 Rer1 family. RE 28.7 36 0.00093 13.7 3.3 11 262-272 134-144 (175) 35 TIGR00821 EII-GUT PTS system, 27.8 23 0.00059 14.8 0.7 14 265-278 142-155 (181) 36 PRK00159 putative septation in 27.5 38 0.00098 13.5 4.7 33 49-81 26-58 (87) 37 cd05142 Barstar Barstar is an 24.5 44 0.0011 13.2 1.9 26 99-124 17-42 (87) 38 COG0530 ECM27 Ca2+/Na+ antipor 24.3 44 0.0011 13.2 7.4 39 71-109 63-106 (320) 39 pfam05454 DAG1 Dystroglycan (D 23.8 45 0.0011 13.1 2.5 20 275-294 165-184 (290) 40 PRK06667 motB flagellar motor 23.6 45 0.0012 13.1 2.7 35 102-136 4-40 (254) 41 PRK10238 aromatic amino acid t 23.3 46 0.0012 13.1 6.6 14 265-278 431-444 (456) 42 cd00489 Barstar_like Barstar i 22.6 48 0.0012 13.0 1.8 28 99-126 16-43 (85) 43 PRK11357 frlA putative fructos 20.6 52 0.0013 12.8 7.6 25 265-289 419-443 (445) 44 TIGR00947 2A73 inorganic carbo 20.1 45 0.0012 13.1 1.0 98 26-141 164-266 (467) No 1 >COG1183 PssA Phosphatidylserine synthase [Lipid metabolism] Probab=100.00 E-value=0 Score=304.73 Aligned_cols=224 Identities=33% Similarity=0.585 Sum_probs=191.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 03656778999999999999999998598799999999999997321799996197655647888889878999899999 Q gi|254780578|r 52 PFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVINFGVAPSLV 131 (298) Q Consensus 52 ~~~~~~pn~~t~~~~~~g~~~i~~~~~~~~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsFgvaPail 131 (298) ..++.+||++|++|++||++||..+.+|+++.|.+++.+|+++|++||++||++|.+|.+|+|+||++|.|||||||+++ T Consensus 6 ~~~~~~pn~iT~~~~~~G~~sI~~a~~~~~~~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsFgVaPA~l 85 (234) T COG1183 6 KRLYLLPNLITALGLFLGLLSIVAALEGRFEAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVSFGVAPALL 85 (234) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56887525999999999999999997167999999999999980653199876078616888775798898850678999 Q ss_pred HHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 86310234442001000024677788888776521456677554544311013442100022222201464332003899 Q gi|254780578|r 132 TYIAVLRQAHAFGWSIALMYTIAISLRLARFNIMNDCDEKDNWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYG 211 (298) Q Consensus 132 ~y~~~~~~~~~~~~~~~~~~~~~~~~rla~fn~~~~~~~~~~~~~~~F~GlP~pa~a~~i~~~~~~~~~~~~~~~~~~~~ 211 (298) .|.+...+ +..++..+.+|++|+++|++|||+...+ ++++|+|+|+|+++..+....+..... ........ T Consensus 86 ~y~~~~~~-~~~~~~~a~~~~~~~alRLArFN~~~~~------~~~~F~GlPip~~a~~~~~~~~~~~~~--~~~~~~~~ 156 (234) T COG1183 86 LYSSGLNT-GPLGLLAALLYVLCGALRLARFNVKTND------DKNFFIGLPIPAAAVVVVLLVLLYHSL--PTGLATVL 156 (234) T ss_pred HHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCEECC------CCCCEEECCHHHHHHHHHHHHHHHCCC--CHHHHHHH T ss_conf 99983247-7689999999999999999972671047------788526653578999999999996223--12379999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999875103433501222332000799----99999999999985699999999999999999999984653 Q gi|254780578|r 212 STIYAMIISFLLCSRLPVWSGKKIHRKFVLPI----VLCSVAYIAFMIHFLWEMIIFSTLCYIMLLPISFYCWKKRY 284 (298) Q Consensus 212 i~~~~~iis~LmVs~i~~~s~K~~~~~~~~~~----ll~i~l~i~ll~~~~~~~L~il~~~Yll~~pi~~~~~~k~~ 284 (298) ....+..++++|+|++|++++|+......... .+.+.++......++|..+.+....|.+++++.+..++|++ T Consensus 157 ~~~~~~~l~~Lmvs~i~~~~~k~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~~~ 233 (234) T COG1183 157 LSGILLLLSILMVSNIPFPSLKKLNALVRVVLLLAGILLLALLALVLILYPWLLLLVIASGYLLSIPIRVRQWFKKL 233 (234) T ss_pred HHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999988022664687665530000899999999999999985011599999999999999999998632558 No 2 >TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase; InterPro: IPR004533 This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding Escherichia coli protein.; GO: 0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0046341 CDP-diacylglycerol metabolic process, 0016020 membrane. Probab=100.00 E-value=5.7e-41 Score=252.09 Aligned_cols=164 Identities=34% Similarity=0.506 Sum_probs=145.3 Q ss_pred HHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999985987-------9999999999999732179999619--76556478888898789998999998 Q gi|254780578|r 62 TILAICAGFSGIGSAIEGNY-------ETAVCMVLVAAFLDGIDGRIARFME--ATSKFGAQLDSLADVINFGVAPSLVT 132 (298) Q Consensus 62 t~~~~~~g~~~i~~~~~~~~-------~~a~~~~~~a~~~D~~DG~~AR~~~--~~s~~G~~ld~~~D~vsFgvaPail~ 132 (298) |.+|.++|++||.....+++ +.|.+++.++.++|++||++|||+| ..|+||+||||+||.||||||||.+. T Consensus 1 t~lN~~~G~~aI~~~l~~~~~GkPhyv~~a~~li~ls~~~D~LDG~vARktnri~~S~fG~ELDSLAD~vsFGVAPa~l~ 80 (174) T TIGR00473 1 TMLNIISGLLAILSLLRYTLRGKPHYVVEACLLILLSMIFDFLDGRVARKTNRITVSDFGKELDSLADVVSFGVAPALLA 80 (174) T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 95779999999999862776677079999999999999841015678886356432556641134778899888999999 Q ss_pred HHHHCCCCCCCHHHCCHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 63102344420010000246-77788888776521456677554544311013442100022222201464332003899 Q gi|254780578|r 133 YIAVLRQAHAFGWSIALMYT-IAISLRLARFNIMNDCDEKDNWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYG 211 (298) Q Consensus 133 y~~~~~~~~~~~~~~~~~~~-~~~~~rla~fn~~~~~~~~~~~~~~~F~GlP~pa~a~~i~~~~~~~~~~~~~~~~~~~~ 211 (298) |..............+..+. +|+++||+|||+.+.+.++++ |+|+|+|++|+.+.................... T Consensus 81 y~~~~y~f~~~~~~~~~~f~~lcG~lRLaRFNv~~~~~~~~~-----FiG~Pip~~al~~~~~~~ldnkyhfle~~~~~~ 155 (174) T TIGR00473 81 YSVALYNFEAILILVAALFVVLCGILRLARFNVLTVKLPKDS-----FIGLPIPVAALLLVSLVLLDNKYHFLEIYSELL 155 (174) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 998862224678999999999999998887333357899764-----267503345899999987077210022210899 Q ss_pred HHHHHHHHHHHHHCCCCCH Q ss_conf 9999999987510343350 Q gi|254780578|r 212 STIYAMIISFLLCSRLPVW 230 (298) Q Consensus 212 i~~~~~iis~LmVs~i~~~ 230 (298) ....++.++.||||+++|| T Consensus 156 ~a~~~~~l~~LMvs~I~yP 174 (174) T TIGR00473 156 AAIAAILLSVLMVSNIKYP 174 (174) T ss_pred HHHHHHHHHHHHCCCCCCC T ss_conf 9999999763100157899 No 3 >pfam01066 CDP-OH_P_transf CDP-alcohol phosphatidyltransferase. All of these members have the ability to catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond. Probab=99.69 E-value=1.8e-16 Score=112.33 Aligned_cols=77 Identities=34% Similarity=0.452 Sum_probs=72.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 56778999999999999999998598799999999999997321799996197655647888889878999899999 Q gi|254780578|r 55 FLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVINFGVAPSLV 131 (298) Q Consensus 55 ~~~pn~~t~~~~~~g~~~i~~~~~~~~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsFgvaPail 131 (298) ...||.+|..++++|+.+.++...+++..+.+++.++.++|++||++||++|++|++|+++|+++|.++.+..+.-+ T Consensus 2 ~~~pN~iT~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~DG~~AR~~~~~S~~G~~lD~~~D~~~~~~~~~~l 78 (96) T pfam01066 2 GITPNLITLLRLILGLLAALLLLLGQYLLAALLLLLAGLLDGLDGKLARRTGQSSPLGALLDSVADRLSDVALLLGL 78 (96) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 83778999999999999999999075999999999999999541999988599893798985884699999999999 No 4 >COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism] Probab=99.63 E-value=6e-15 Score=103.68 Aligned_cols=84 Identities=26% Similarity=0.241 Sum_probs=70.0 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3656778999999-99999999999859--87999999999999973217999961976556478888898789998999 Q gi|254780578|r 53 FKFLFPNLVTILA-ICAGFSGIGSAIEG--NYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVINFGVAPS 129 (298) Q Consensus 53 ~~~~~pn~~t~~~-~~~g~~~i~~~~~~--~~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsFgvaPa 129 (298) .+..+||.+|+.+ ++.++.+......+ .+..+.+++.+++++|++||.+||++|+.|++|+.+|+.+|.++.+.++. T Consensus 10 ~~~~~PN~lTl~r~~l~~~~~~~~~~~~~~~~~~~~~l~~~a~l~D~lDG~lAR~~~~~S~~G~~LDp~~Dk~~~~~~l~ 89 (192) T COG0558 10 KLGNTPNQLTLLRIFLIPLFALLLLLPGLGLLLLALVLFLLAALTDALDGYLARKWGQVSRFGAFLDPVADKLLDAALLL 89 (192) T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 73169719999999999999999999856799999999999999986009999981898841657432557999999999 Q ss_pred HHHHHHH Q ss_conf 9986310 Q gi|254780578|r 130 LVTYIAV 136 (298) Q Consensus 130 il~y~~~ 136 (298) .+.+.-. T Consensus 90 ~l~~~~~ 96 (192) T COG0558 90 GLVALGP 96 (192) T ss_pred HHHHHHC T ss_conf 9999802 No 5 >PRK10832 phosphatidylglycerophosphate synthetase; Provisional Probab=99.57 E-value=4.2e-14 Score=98.85 Aligned_cols=71 Identities=27% Similarity=0.255 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 656778999999999999999998---59879999999999999732179999619765564788888987899 Q gi|254780578|r 54 KFLFPNLVTILAICAGFSGIGSAI---EGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVINF 124 (298) Q Consensus 54 ~~~~pn~~t~~~~~~g~~~i~~~~---~~~~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsF 124 (298) +..+||.+|..++++-+.-+...+ ++....|.....+|++.|++||.+|||+|+.|.+|+.+|++||.+-- T Consensus 2 ~~niPN~LT~~Ri~lvP~~v~~~~~~~~~~~~~a~~lf~~a~iTD~lDG~lARk~n~~S~lG~~lDPiADKllv 75 (182) T PRK10832 2 QFNIPTLLTLFRVILIPFFVLVFYLPFTWAPFVCALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLV 75 (182) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 98702899999999999999999973441899999999999999999799998769968503364478889999 No 6 >KOG1617 consensus Probab=99.57 E-value=4.4e-15 Score=104.46 Aligned_cols=79 Identities=30% Similarity=0.299 Sum_probs=71.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 1303656778999999999999999998598799999999999997321799996197655647888889878999899 Q gi|254780578|r 50 IPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVINFGVAP 128 (298) Q Consensus 50 ~~~~~~~~pn~~t~~~~~~g~~~i~~~~~~~~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsFgvaP 128 (298) ....-+.+||++|++++.++.+-.++..++++..|......|++.|++||.+||+++..|.+|..||.+||++--+... T Consensus 63 l~~kv~tiPN~Ltl~Ri~a~Pli~~lii~~~~t~A~~~Fa~Ag~TD~lDGyIARk~~l~S~~Gs~LDPlADkvlit~~~ 141 (243) T KOG1617 63 LKSKVLTIPNMLTLARIAATPLIGYLIIDENFTAAFGLFAVAGITDLLDGYIARKMRLGSIAGSVLDPLADKVLITCLT 141 (243) T ss_pred CCCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHH T ss_conf 1022112632788878743060467775133409999999987688777888863133403443027488889999999 No 7 >PTZ00307 ethanolamine phosphotransferase; Provisional Probab=99.50 E-value=2e-12 Score=89.33 Aligned_cols=79 Identities=24% Similarity=0.231 Sum_probs=63.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC------CC-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 567789999999999999999985------98-----7999999999999973217999961976556478888898789 Q gi|254780578|r 55 FLFPNLVTILAICAGFSGIGSAIE------GN-----YETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVIN 123 (298) Q Consensus 55 ~~~pn~~t~~~~~~g~~~i~~~~~------~~-----~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vs 123 (298) |+-||.+|+.|+++...+.....- +. +....+.+++.+.+|.+||+.|||+|++|++|+.+|+.+|.++ T Consensus 60 w~APN~iTl~G~~~~~~~~~~~~~~~~~~~~~~P~W~~~~~a~~lf~YqtlD~~DGkqARRTg~sspLGeLFDHG~Ds~~ 139 (417) T PTZ00307 60 TVAPNCITFTGFLIGMSSAALLLYFYFFEEGVYPSWVLYYAAFALFAYQTLDAIDGKQARRTGTGSPLGELFDHGCDAFL 139 (417) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCCCHHHH T ss_conf 55727999999999999999987526444578974699999999999986431142878635788971776624502788 Q ss_pred HHHHHHHHHH Q ss_conf 9989999986 Q gi|254780578|r 124 FGVAPSLVTY 133 (298) Q Consensus 124 FgvaPail~y 133 (298) -......... T Consensus 140 ~~~~~~~~~~ 149 (417) T PTZ00307 140 TPFVLLNVSL 149 (417) T ss_pred HHHHHHHHHH T ss_conf 8999999999 No 8 >KOG2877 consensus Probab=99.49 E-value=5.4e-13 Score=92.54 Aligned_cols=96 Identities=25% Similarity=0.314 Sum_probs=71.1 Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCC---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 1002333101303656778999999999999999998--598---------79999999999999732179999619765 Q gi|254780578|r 41 KRWSLQEKEIPPFKFLFPNLVTILAICAGFSGIGSAI--EGN---------YETAVCMVLVAAFLDGIDGRIARFMEATS 109 (298) Q Consensus 41 ~~~~~~~~~~~~~~~~~pn~~t~~~~~~g~~~i~~~~--~~~---------~~~a~~~~~~a~~~D~~DG~~AR~~~~~s 109 (298) |-|..-.+..|. |+-||++|+.|+..-........ +.+ +-.+++.+++.+-+|+.||++|||+|++| T Consensus 38 pfW~~~v~~~P~--wmAPNlITL~Gl~~~v~~~Ll~~~ydP~~~~~~P~W~y~a~alglFlYqTlDaiDGkQARRTnsSs 115 (389) T KOG2877 38 PFWNWLVKVFPL--WMAPNLITLIGLIFNVITVLLLLYYDPNLDEPAPRWTYFAAALGLFLYQTLDAIDGKQARRTNSSS 115 (389) T ss_pred HHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC T ss_conf 899999987625--028508999989999999999984186568998747999999999998730355646640078999 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 56478888898789998999998631023 Q gi|254780578|r 110 KFGAQLDSLADVINFGVAPSLVTYIAVLR 138 (298) Q Consensus 110 ~~G~~ld~~~D~vsFgvaPail~y~~~~~ 138 (298) ++|+.+|+.+|.++-...--.+.+..+.+ T Consensus 116 PLGELFDHG~DS~stvf~~l~~~s~~~~G 144 (389) T KOG2877 116 PLGELFDHGCDSISTVFVTLAVCSAFGLG 144 (389) T ss_pred CCHHHHCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 73766513510578899999999996799 No 9 >TIGR00560 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; InterPro: IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (2.7.8.5 from EC), also known as phosphatidylglycerophosphate synthase, glycerophosphate phosphatidyltransferase and PGP synthase, catalyses the conversion ofCDP-diacylglycerol and glycerol-3-phosphate to CMP and 3-(3-phosphatidyl)-glycerol 1-phosphate in the commited step to the synthesis of acidic phospholipids. It is an integral membrane protein. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharomyces cerevisiae (Baker's yeast) YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.; GO: 0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0016021 integral to membrane. Probab=99.35 E-value=7.9e-12 Score=85.90 Aligned_cols=77 Identities=31% Similarity=0.313 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHCC-----------C--------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 67789999999999999-9999859-----------8--------79999999999999732179999619765564788 Q gi|254780578|r 56 LFPNLVTILAICAGFSG-IGSAIEG-----------N--------YETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQL 115 (298) Q Consensus 56 ~~pn~~t~~~~~~g~~~-i~~~~~~-----------~--------~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~l 115 (298) .+||-+|+.+++..+-- +....++ + ...+....++|.+.|++||.+|||+|+.|.||+.+ T Consensus 2 ~~Pn~lT~~Ri~~~~p~~~l~~l~~~~~~~~~~~vG~~~~~~~~~~~~~~~lF~~A~~TDwlDGYlARk~~~vs~fGk~l 81 (217) T TIGR00560 2 NIPNWLTLFRIFILLPLFILIFLENLLGVLAEFGVGAVVLPIQVSLFIGGLLFLIAAVTDWLDGYLARKWNLVSNFGKFL 81 (217) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 76079999999999999999963200211002221300023879989999999999798777899999960212123464 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 88898789998999998 Q gi|254780578|r 116 DSLADVINFGVAPSLVT 132 (298) Q Consensus 116 d~~~D~vsFgvaPail~ 132 (298) |++||.+---.|-.++. T Consensus 82 DPlADK~lv~~a~~Li~ 98 (217) T TIGR00560 82 DPLADKVLVLAALVLII 98 (217) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 02876999999999999 No 10 >COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism] Probab=99.22 E-value=1.2e-10 Score=79.20 Aligned_cols=92 Identities=18% Similarity=0.262 Sum_probs=67.2 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------HHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 3101303656778999999999999999998598---------799--99999999999732179999619765564788 Q gi|254780578|r 47 EKEIPPFKFLFPNLVTILAICAGFSGIGSAIEGN---------YET--AVCMVLVAAFLDGIDGRIARFMEATSKFGAQL 115 (298) Q Consensus 47 ~~~~~~~~~~~pn~~t~~~~~~g~~~i~~~~~~~---------~~~--a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~l 115 (298) .-|+.+. ++-||++|++|++.-...+...+..+ +.+ -.+.+++.+.+|.+||..|||+|+.|++|+.+ T Consensus 37 ll~viP~-~mAPNliTL~Gl~fiv~nvlt~l~ydp~~~~~~~~w~yfs~alg~FlYqtfD~lDG~qARRTGt~spLGeLF 115 (384) T COG5050 37 LLRVIPY-WMAPNLITLCGLIFIVANVLTTLYYDPCLSVDGPRWTYFSYALGLFLYQTFDALDGRQARRTGTGSPLGELF 115 (384) T ss_pred HHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHH T ss_conf 9987010-138339999879999999999995052247786245899999999988633555647652178999718887 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 888987899989999986310234 Q gi|254780578|r 116 DSLADVINFGVAPSLVTYIAVLRQ 139 (298) Q Consensus 116 d~~~D~vsFgvaPail~y~~~~~~ 139 (298) |+-.|.+.-++.-.+++-..+.+. T Consensus 116 DH~vDsint~l~~i~~~s~~g~g~ 139 (384) T COG5050 116 DHGVDSINTTLSAIIFVSAFGMGE 139 (384) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 512888887899999999966798 No 11 >KOG3240 consensus Probab=98.98 E-value=1.6e-08 Score=67.05 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=64.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 567789999999999999999985987999999999999973217999961976556478888898789998999998 Q gi|254780578|r 55 FLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVINFGVAPSLVT 132 (298) Q Consensus 55 ~~~pn~~t~~~~~~g~~~i~~~~~~~~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsFgvaPail~ 132 (298) +.+||++-.++.++..+|.++... +...+.++-.++..+|.+||..||++|+.|.||+.||-+-|..+-...-..++ T Consensus 13 ~~iPN~iGY~RI~laiisf~vm~~-~p~~~~~lY~~S~lLDAfDG~aAR~~NQ~S~fGA~LDmvTDR~st~~LL~~L~ 89 (218) T KOG3240 13 LYIPNLIGYMRIVLAILSFYVMSS-NPTTFSVLYLLSSLLDAFDGWAARKLNQVSRFGAMLDMVTDRCSTACLLVFLC 89 (218) T ss_pred EEECCHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 984405649999999999999526-93389999999877876527999987204258899999987762699999999 No 12 >PRK10921 twin-arginine protein translocation system subunit TatC; Provisional Probab=89.84 E-value=1.2 Score=22.06 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC Q ss_conf 9999999999999999984653023565420101 Q gi|254780578|r 263 IFSTLCYIMLLPISFYCWKKRYGIKPEQKKHKDY 296 (298) Q Consensus 263 ~il~~~Yll~~pi~~~~~~k~~~~~~~~~~~ed~ 296 (298) ..+...|-+.+.+..+.-+||++.+++++.+.|. T Consensus 220 ~Pl~~LYE~~i~i~~~~~~kr~~~~~~~~~~~~~ 253 (255) T PRK10921 220 IPMYCLFEIGVFFSRFYVGKGRNREEENDAEAES 253 (255) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999999998664445452001002 No 13 >pfam08009 CDP-OH_P_tran_2 CDP-alcohol phosphatidyltransferase 2. This domain is found on CDP-alcohol phosphatidyltransferases. These enzymes catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond. Probab=89.65 E-value=0.38 Score=24.95 Aligned_cols=36 Identities=31% Similarity=0.744 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 007999999999999998569999999999999999 Q gi|254780578|r 239 FVLPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLP 274 (298) Q Consensus 239 ~~~~~ll~i~l~i~ll~~~~~~~L~il~~~Yll~~p 274 (298) ....++..++..+++++.+||.++.+....|+++.| T Consensus 4 lvl~~~~~v~v~ia~lI~~PW~tLs~~~v~Yl~slP 39 (39) T pfam08009 4 LVLPLIVLVVVFIALLITYPWLTLSVLGVLYLLSLP 39 (39) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 302199999999999997258999999999750389 No 14 >PRK10478 putative fructose-like permease EIIC subunit 2; Provisional Probab=80.98 E-value=1.4 Score=21.80 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999732179999619765564788888987899989 Q gi|254780578|r 91 AAFLDGIDGRIARFMEATSKFGAQLDSLADVINFGVA 127 (298) Q Consensus 91 a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsFgva 127 (298) +.+.-.+-|.++|+++. -+..+.++++-..+-.-+. T Consensus 106 aii~GflaGy~v~~lkk-iklp~~l~~l~piliiPll 141 (359) T PRK10478 106 ALIAGIIGGIVVHYLKK-IPVHKVLRSVMPIFIIPIV 141 (359) T ss_pred HHHHHHHHHHHHHHHHH-CCCCHHHHCCCCEEEHHHH T ss_conf 99999999999999986-7996556511566526668 No 15 >COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription] Probab=78.36 E-value=4.3 Score=18.96 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=41.0 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00389999999999875103433-------50122233200079999999999999985699999999999999999999 Q gi|254780578|r 206 VIYGYGSTIYAMIISFLLCSRLP-------VWSGKKIHRKFVLPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLPISFY 278 (298) Q Consensus 206 ~~~~~~i~~~~~iis~LmVs~i~-------~~s~K~~~~~~~~~~ll~i~l~i~ll~~~~~~~L~il~~~Yll~~pi~~~ 278 (298) ..+++......++...++.-.-| ....|-+.++++...+..+++....+++.++..=.++...|+=.+.+..+ T Consensus 103 ~~Nn~~vLa~~iiglL~i~~yAPa~teahplvg~e~~kr~Kk~a~im~lll~iI~liI~~~~kq~i~lg~l~q~IsllPI 182 (198) T COG4512 103 DANNYAVLAYFIIGLLLIFKYAPADTEAHPLVGTEHRKRLKKRAAIMLLLLFIILLIIPPFSKQGIVLGSLFQGISLLPI 182 (198) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 62039999999999989873375510017776389999999999999999999999957999889889999865520231 Q ss_pred HHHHHHCCCCC Q ss_conf 98465302356 Q gi|254780578|r 279 CWKKRYGIKPE 289 (298) Q Consensus 279 ~~~k~~~~~~~ 289 (298) .+++.++...+ T Consensus 183 ~ykv~~rryrn 193 (198) T COG4512 183 TYKVLRRRYRN 193 (198) T ss_pred HHHHHHHHHHH T ss_conf 13988889877 No 16 >PRK10746 putative transport protein YifK; Provisional Probab=73.85 E-value=5.7 Score=18.25 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 999999999999999984653023565420 Q gi|254780578|r 264 FSTLCYIMLLPISFYCWKKRYGIKPEQKKH 293 (298) Q Consensus 264 il~~~Yll~~pi~~~~~~k~~~~~~~~~~~ 293 (298) +..+.+++.....|..|+|+|+.+..+.|| T Consensus 432 ~~~~~~~~~~~~~y~~~~~~r~~~~~~~~~ 461 (461) T PRK10746 432 FVGIIFLLAVTAIYKVFGLNRHGKAHKLEE 461 (461) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 999999999999999860022577776678 No 17 >PRK10644 arginine:agmatin antiporter; Provisional Probab=69.83 E-value=7.1 Score=17.71 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 999998569999999999999999999998465302356542 Q gi|254780578|r 251 IAFMIHFLWEMIIFSTLCYIMLLPISFYCWKKRYGIKPEQKK 292 (298) Q Consensus 251 i~ll~~~~~~~L~il~~~Yll~~pi~~~~~~k~~~~~~~~~~ 292 (298) +.++....+..+....+...+-.++ |..+++|+++++++.| T Consensus 399 ~~~i~~~~~~~~~~~~i~~~~g~~~-Y~~~~~r~~k~~~~~~ 439 (445) T PRK10644 399 IWAVVGSGAKEVMWSFVTLMVITAF-YALNYNRLHKNPYPLD 439 (445) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCC T ss_conf 9999984099999999999999999-9998886049988777 No 18 >PRK10655 potE putrescine transporter; Provisional Probab=64.29 E-value=9.2 Score=17.06 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9985699999999999999999999984653023565 Q gi|254780578|r 254 MIHFLWEMIIFSTLCYIMLLPISFYCWKKRYGIKPEQ 290 (298) Q Consensus 254 l~~~~~~~L~il~~~Yll~~pi~~~~~~k~~~~~~~~ 290 (298) +....+..+....+.+++ +...|.+.+||++.+|++ T Consensus 402 i~~~g~~~~~~~~i~~~i-G~~~Y~~~~~k~~~~~~~ 437 (438) T PRK10655 402 LYSSGEEAMLYGSIVTFL-GWTLYGLISPRFELKNKH 437 (438) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC T ss_conf 999729999999999999-999999997887642369 No 19 >PRK09509 fieF ferrous iron efflux protein F; Reviewed Probab=51.20 E-value=16 Score=15.76 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=13.0 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 619765564788888987899989 Q gi|254780578|r 104 FMEATSKFGAQLDSLADVINFGVA 127 (298) Q Consensus 104 ~~~~~s~~G~~ld~~~D~vsFgva 127 (298) ..|..+.+..-.||+.|.++..++ T Consensus 33 ~sgS~AllADa~hSl~D~~s~~~~ 56 (300) T PRK09509 33 YTGSVSILAALVDSLVDIAASLTN 56 (300) T ss_pred HHCHHHHHHHHHHHHHHHHHHHHH T ss_conf 945099999899999999999999 No 20 >PRK05951 ubiA prenyltransferase; Reviewed Probab=48.25 E-value=17 Score=15.49 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0389999999999875103433501222332000------------7999999999999998569999999999999999 Q gi|254780578|r 207 IYGYGSTIYAMIISFLLCSRLPVWSGKKIHRKFV------------LPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLP 274 (298) Q Consensus 207 ~~~~~i~~~~~iis~LmVs~i~~~s~K~~~~~~~------------~~~ll~i~l~i~ll~~~~~~~L~il~~~Yll~~p 274 (298) .....+...+....++++.+++-....+...+.+ ......+..++..+.......++.....-++..| T Consensus 173 ~~l~s~p~gll~~~IL~~Nn~rD~e~D~~~Gk~Tl~v~lG~~~a~~~~~~l~~~~y~~~~~~~~~~~~p~~~ll~lltlP 252 (296) T PRK05951 173 NVLAGVPLGLLVAAVLLANNLRDIEDDERLGAPTLAVIFGRKSAVALYAFALLSPYLILVILVIAILLPLISLWALLTLP 252 (296) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999878622154997699764878675759999999999999999999998660599999999999 Q ss_pred HHHHHHHHHHCCCCC Q ss_conf 999998465302356 Q gi|254780578|r 275 ISFYCWKKRYGIKPE 289 (298) Q Consensus 275 i~~~~~~k~~~~~~~ 289 (298) ..+-..++.+++... T Consensus 253 la~~l~~~~~~~~~~ 267 (296) T PRK05951 253 VAYALCLWQSRKFPH 267 (296) T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999752545 No 21 >PRK08457 motB flagellar motor protein MotB; Reviewed Probab=45.95 E-value=18 Score=15.46 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=24.1 Q ss_pred HHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99619765--564788888987899989999986310234 Q gi|254780578|r 102 ARFMEATS--KFGAQLDSLADVINFGVAPSLVTYIAVLRQ 139 (298) Q Consensus 102 AR~~~~~s--~~G~~ld~~~D~vsFgvaPail~y~~~~~~ 139 (298) ||+.+... .-|+|+-+.+|++|--++-.+++|.+.... T Consensus 2 akkkk~~e~~~g~~WlvTYADlmTLLlaFFVlL~smS~~d 41 (251) T PRK08457 2 AKKKKCPECPAGEKWAVPYADFLSLLLALFIALYAISAVN 41 (251) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9877787799996178789999999999999999986389 No 22 >KOG3059 consensus Probab=41.07 E-value=23 Score=14.84 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=63.8 Q ss_pred CCHHHHHHHHCCCC--CCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-C Q ss_conf 71266665321146--65547423688987410110014321002333101303656778999999999999999998-5 Q gi|254780578|r 2 GNTLQCKEIPRGKK--KYNVLPDDFVVPSDQDEARYSFYKGKRWSLQEKEIPPFKFLFPNLVTILAICAGFSGIGSAI-E 78 (298) Q Consensus 2 ~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~~t~~~~~~g~~~i~~~~-~ 78 (298) -|..+.|+.|-++. .+.--|++-+...+.||-|-+....+....+... -.-++.+-....+++..++... + T Consensus 2 ~~~~~~~~~pWkKvLy~kQ~YPDNYtDesFle~lr~ni~i~~~~~~~~v~------~~~~~~~~L~~i~~~~~if~~~l~ 75 (292) T KOG3059 2 SNLDMMTRMPWKKVLYLKQEYPDNYTDESFLEELRMNINISIYDLWSAVA------ESMVLSQHLDMITSFVVIFVSTLE 75 (292) T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 76444678765888752689998656889999997634223467889997------662998763445678999999988 Q ss_pred CCHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--HHHHHH Q ss_conf 9879-------99999999999973217999961976556478888898789--998999 Q gi|254780578|r 79 GNYE-------TAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVIN--FGVAPS 129 (298) Q Consensus 79 ~~~~-------~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vs--FgvaPa 129 (298) +++- .-..-...-..+|.+||+--|...... .++.+.+..-.+. +|+.|. T Consensus 76 ~~~~~~~~l~~~~~~~~~~fL~f~~~~~~~~r~~sl~~-~~~~lks~~~vt~~ly~lsPV 134 (292) T KOG3059 76 SNLSENKILYGSNSIPGIGFLLFDLLLSPRGRTLSLAL-LPEDLKSIFTVTLFLYGLSPV 134 (292) T ss_pred HHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHH T ss_conf 74000233205554037999999997043114688656-289999999999999987099 No 23 >TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the rifin family of variant surface antigens, encoded by the rif (short for "repetetive interspersed family") genes. This is the largest variant surface antigen family in P. falciparum, with roughly 150 genes present in the genome of this parasite . The function of these proteins is not yet known, but rifins are strongly immunogenic and high levels of anti-rifin antibodies are correlated with rapid parasite clearance and asymptomatic infections . . Probab=38.96 E-value=24 Score=14.64 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999999846530235 Q gi|254780578|r 263 IFSTLCYIMLLPISFYCWKKRYGIKP 288 (298) Q Consensus 263 ~il~~~Yll~~pi~~~~~~k~~~~~~ 288 (298) .|+.++.+..++...+.||||++++- T Consensus 360 AIliIVLIMvIIYLILRYRRKKKMKK 385 (395) T TIGR01477 360 AILIIVLIMVIIYLILRYRRKKKMKK 385 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 99999999999999875431122032 No 24 >COG2966 Uncharacterized conserved protein [Function unknown] Probab=36.94 E-value=26 Score=14.46 Aligned_cols=55 Identities=7% Similarity=0.031 Sum_probs=32.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 036567789999999999999999985987999999999999973217999961976 Q gi|254780578|r 52 PFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEAT 108 (298) Q Consensus 52 ~~~~~~pn~~t~~~~~~g~~~i~~~~~~~~~~a~~~~~~a~~~D~~DG~~AR~~~~~ 108 (298) +.+|--|=.+-..++.||.++..+. |++.........+.+...++=.+.|+.+.. T Consensus 120 ~~~y~~~l~~~~~g~~~~~f~~l~g--G~w~d~~iaf~~~~~~~~~~~~l~r~~~~~ 174 (250) T COG2966 120 PLRYSRWLVLLMAGLAAAAFALLFG--GGWLDFLIAFFAGLLGFLLRQYLSRKGNPD 174 (250) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCHH T ss_conf 6556668999999999999999908--953888999999999999999999861422 No 25 >TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection .. Probab=33.31 E-value=30 Score=14.11 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=18.5 Q ss_pred HHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 73217999961976--556478888898789998999998 Q gi|254780578|r 95 DGIDGRIARFMEAT--SKFGAQLDSLADVINFGVAPSLVT 132 (298) Q Consensus 95 D~~DG~~AR~~~~~--s~~G~~ld~~~D~vsFgvaPail~ 132 (298) |.-|-..-|-...+ +.--.+||+|=.-..=||-.+-+. T Consensus 155 Ec~~~k~~r~~~ls~~Kv~D~YL~nLK~gC~~Gvg~C~l~ 194 (315) T TIGR01478 155 ECTNKKILRNELLSSTKVHDNYLKNLKKGCTAGVGTCALS 194 (315) T ss_pred CCCCCHHHCCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHH T ss_conf 1012022304223321341467741103451036898899 No 26 >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Probab=32.05 E-value=4 Score=19.14 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC-CHHH------------HHH--HHHHHHHHHHHHHHHH Q ss_conf 99999999997321799996197655-6478------------888--8987899989999986 Q gi|254780578|r 85 VCMVLVAAFLDGIDGRIARFMEATSK-FGAQ------------LDS--LADVINFGVAPSLVTY 133 (298) Q Consensus 85 ~~~~~~a~~~D~~DG~~AR~~~~~s~-~G~~------------ld~--~~D~vsFgvaPail~y 133 (298) =++.+.++.|+++|--++|+++.++. ||+. ++. -.|++.||+.|=++-. T Consensus 239 nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfiGR 302 (411) T PRK05342 239 NILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFIGR 302 (411) T ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHHCC T ss_conf 1799911553358999986357887677887664110005678762798788873883776146 No 27 >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Probab=30.89 E-value=9.6 Score=16.95 Aligned_cols=50 Identities=20% Similarity=0.506 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHH-------------HHHH--HHHHHHHHHHHHHHH Q ss_conf 99999999999732179999619765-56478-------------8888--987899989999986 Q gi|254780578|r 84 AVCMVLVAAFLDGIDGRIARFMEATS-KFGAQ-------------LDSL--ADVINFGVAPSLVTY 133 (298) Q Consensus 84 a~~~~~~a~~~D~~DG~~AR~~~~~s-~~G~~-------------ld~~--~D~vsFgvaPail~y 133 (298) .=++.+.++.||++|.-+.++++.++ -||+. +..+ -|.+.||+.|-++-. T Consensus 226 ~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGR 291 (408) T COG1219 226 SNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGR 291 (408) T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCC T ss_conf 634678244010399999986268742456644534444128899875486878870883887266 No 28 >PRK09038 flagellar motor protein MotD; Reviewed Probab=30.88 E-value=33 Score=13.87 Aligned_cols=39 Identities=23% Similarity=0.057 Sum_probs=24.1 Q ss_pred HHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9961976556--47888889878999899999863102344 Q gi|254780578|r 102 ARFMEATSKF--GAQLDSLADVINFGVAPSLVTYIAVLRQA 140 (298) Q Consensus 102 AR~~~~~s~~--G~~ld~~~D~vsFgvaPail~y~~~~~~~ 140 (298) +|+.+.+..- ++|+-+.+|+++--++-.+++|.+..... T Consensus 3 ~Rrk~~~~~~~~~aW~vtyADlmTLLlaFFVlL~smS~~d~ 43 (285) T PRK09038 3 RRRRHHEEHENHERWLVSYADFITLLFAFFVVMYAISSVNE 43 (285) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 77678878999861888999999999999999999725899 No 29 >pfam05297 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Probab=29.87 E-value=35 Score=13.77 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=21.7 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC Q ss_conf 999999999985699999-999999999999999984653023565420101 Q gi|254780578|r 246 CSVAYIAFMIHFLWEMII-FSTLCYIMLLPISFYCWKKRYGIKPEQKKHKDY 296 (298) Q Consensus 246 ~i~l~i~ll~~~~~~~L~-il~~~Yll~~pi~~~~~~k~~~~~~~~~~~ed~ 296 (298) +++++++.....-|.+++ =+....++..+..|.+++--++.+| .+|+|. T Consensus 151 IilLIIAv~LhqaW~T~LvDL~WLlLFLaILIW~Y~Hgprhsde--hhhdds 200 (382) T pfam05297 151 IILLIIALYLQQNWWTLLVDLLWLLLFLAILIWMYYHGPRHSDE--HHHDDS 200 (382) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCC T ss_conf 99999999999999999999999999999999975127776533--346677 No 30 >pfam05646 consensus Probab=29.70 E-value=35 Score=13.76 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=50.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 36567789999999999999999985987999999999999973217999961976556478888898789998999998 Q gi|254780578|r 53 FKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVINFGVAPSLVT 132 (298) Q Consensus 53 ~~~~~pn~~t~~~~~~g~~~i~~~~~~~~~~a~~~~~~a~~~D~~DG~~AR~~~~~s~~G~~ld~~~D~vsFgvaPail~ 132 (298) +.-.+-+.-|..+++.|+.|.++-++|-....+.++......=.+ .+ +......++++|--|.+.-|+..+++- T Consensus 22 N~~~l~~~Rt~~s~~~G~~AGILGLtgl~GFifY~~~~~~~s~~l---~~---k~~~~~~~YF~s~~~~~~~g~~~gl~t 95 (110) T pfam05646 22 NLKVIQYCRTSLSAISGVLAGILGLNGLIGFVFYFLVMLILSVLL---MA---KAGFSWDKYFDSRRRLLTDGFLGGLMT 95 (110) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HH---HHCCCHHHHCCCHHHHHHCCHHCCHHH T ss_conf 899999999999999878875142012189999999999999999---99---828978885087888636004122889 Q ss_pred HH Q ss_conf 63 Q gi|254780578|r 133 YI 134 (298) Q Consensus 133 y~ 134 (298) |. T Consensus 96 fV 97 (110) T pfam05646 96 YV 97 (110) T ss_pred HH T ss_conf 99 No 31 >PRK10245 adrA diguanylate cyclase AdrA; Provisional Probab=29.25 E-value=36 Score=13.71 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=44.3 Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH---HHHH Q ss_conf 5547423688987410110014321002333101303656778999999999999999998598799999999---9999 Q gi|254780578|r 17 YNVLPDDFVVPSDQDEARYSFYKGKRWSLQEKEIPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVL---VAAF 93 (298) Q Consensus 17 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~~t~~~~~~g~~~i~~~~~~~~~~a~~~~~---~a~~ 93 (298) +.+.+++.+...+++|.+-+. ....+|+. +|- ..|+..|++.+..++-.+-....+|.+ -+.+ T Consensus 14 ~~~~~~~~~~~~~~~~~~r~g------l~f~rR~~-----~~R---~~g~~~~f~~v~~~l~~~~~~~~~w~ll~~~~~~ 79 (371) T PRK10245 14 KAAAHGEEPPLTPQNEHQRSG------LRFARRVR-----LPR---AVGLAGMFLPIASTLVSHPPPGWWWLLLVGWAFV 79 (371) T ss_pred HHHCCCCCCCCCCCCCCCCCH------HHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 753134489999730000120------36899988-----889---9744356896888886346627999999999988 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHH Q ss_conf 9732179999619765564788888-98789998999 Q gi|254780578|r 94 LDGIDGRIARFMEATSKFGAQLDSL-ADVINFGVAPS 129 (298) Q Consensus 94 ~D~~DG~~AR~~~~~s~~G~~ld~~-~D~vsFgvaPa 129 (298) ---+-=..||+ ...++-+|..++ .|...-|+=-+ T Consensus 80 WPh~A~~~a~r--s~~p~~~E~~Nl~~D~~~gG~Wv~ 114 (371) T PRK10245 80 WPHLAWQIASR--AVDPLSREIYNLKTDAVLAGMWVG 114 (371) T ss_pred HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 69999999871--798399999999999999899999 No 32 >PRK03557 zinc transporter ZitB; Provisional Probab=28.89 E-value=36 Score=13.67 Aligned_cols=14 Identities=21% Similarity=0.019 Sum_probs=7.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88889878999899 Q gi|254780578|r 115 LDSLADVINFGVAP 128 (298) Q Consensus 115 ld~~~D~vsFgvaP 128 (298) ++++.|.++.+++- T Consensus 52 ~H~l~D~~~~~i~l 65 (312) T PRK03557 52 GHMLTDAAALLFAL 65 (312) T ss_pred HHHHHHHHHHHHHH T ss_conf 99998999999999 No 33 >COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Probab=28.74 E-value=36 Score=13.66 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=16.3 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 96197655647888889878999899 Q gi|254780578|r 103 RFMEATSKFGAQLDSLADVINFGVAP 128 (298) Q Consensus 103 R~~~~~s~~G~~ld~~~D~vsFgvaP 128 (298) -.+|..+.+-.-++|++|.++-.++- T Consensus 34 ~~~gS~ALlADaihs~~D~~~si~~l 59 (304) T COG0053 34 ILTGSVALLADAIHSLSDIVASLIVL 59 (304) T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 40365999999998899999999999 No 34 >pfam03248 Rer1 Rer1 family. RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Probab=28.69 E-value=36 Score=13.65 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.0 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780578|r 262 IIFSTLCYIML 272 (298) Q Consensus 262 L~il~~~Yll~ 272 (298) ++.+.+.|.+. T Consensus 134 FWPiLl~Yfi~ 144 (175) T pfam03248 134 FWPILLMYFIV 144 (175) T ss_pred HHHHHHHHHHH T ss_conf 47899999999 No 35 >TIGR00821 EII-GUT PTS system, glucitol/sorbitol-specific, IIC component; InterPro: IPR004699 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane. Probab=27.75 E-value=23 Score=14.77 Aligned_cols=14 Identities=7% Similarity=0.370 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780578|r 265 STLCYIMLLPISFY 278 (298) Q Consensus 265 l~~~Yll~~pi~~~ 278 (298) +.+-|++.+.+..+ T Consensus 142 La~~YLLVGLv~NF 155 (181) T TIGR00821 142 LAVSYLLVGLVTNF 155 (181) T ss_pred HHHHHHHHHHHHHH T ss_conf 89999999999986 No 36 >PRK00159 putative septation inhibitor protein; Reviewed Probab=27.46 E-value=38 Score=13.53 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=22.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 013036567789999999999999999985987 Q gi|254780578|r 49 EIPPFKFLFPNLVTILAICAGFSGIGSAIEGNY 81 (298) Q Consensus 49 ~~~~~~~~~pn~~t~~~~~~g~~~i~~~~~~~~ 81 (298) +.+.-+|+.|-.++++-+-+..+.+++..++++ T Consensus 26 ~~~sp~W~~p~m~~lmliGL~Wivv~Yis~~~~ 58 (87) T PRK00159 26 VGPSSVWYVVLMLGLMLIGLAWLMVFYLAGPAI 58 (87) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 899985099999999999899998986515878 No 37 >cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase. Probab=24.48 E-value=44 Score=13.20 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.4 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 79999619765564788888987899 Q gi|254780578|r 99 GRIARFMEATSKFGAQLDSLADVINF 124 (298) Q Consensus 99 G~~AR~~~~~s~~G~~ld~~~D~vsF 124 (298) -.+++.++....+|.-+|.+-|.+|- T Consensus 17 ~~l~~~~~lp~~yG~NlDALWD~ltg 42 (87) T cd05142 17 QILKKELALPEYYGENLDALWDCLTG 42 (87) T ss_pred HHHHHHCCCCHHHCCCHHHHHHHHHC T ss_conf 99999839943534789999999847 No 38 >COG0530 ECM27 Ca2+/Na+ antiporter [Inorganic ion transport and metabolism] Probab=24.33 E-value=44 Score=13.19 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=19.8 Q ss_pred HHHHHHHCCCHHHHHHHH-----HHHHHHHHHHHHHHHHCCCCC Q ss_conf 999999859879999999-----999999732179999619765 Q gi|254780578|r 71 SGIGSAIEGNYETAVCMV-----LVAAFLDGIDGRIARFMEATS 109 (298) Q Consensus 71 ~~i~~~~~~~~~~a~~~~-----~~a~~~D~~DG~~AR~~~~~s 109 (298) .++..+.+|+...|.--+ ..-.++=+.++.++++.-.+. T Consensus 63 vs~~a~l~g~~~iavGnvlGSni~ni~li~gl~ali~~~~~~~~ 106 (320) T COG0530 63 VSLVAALSGNPDIAVGNVLGSNIFNILLILGLAALIAPLKVDSD 106 (320) T ss_pred HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999983999825115337789999999999999845675014 No 39 >pfam05454 DAG1 Dystroglycan (Dystrophin-associated glycoprotein 1). Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in human. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton. [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin rece Probab=23.80 E-value=45 Score=13.13 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=9.4 Q ss_pred HHHHHHHHHHCCCCCCCCHH Q ss_conf 99999846530235654201 Q gi|254780578|r 275 ISFYCWKKRYGIKPEQKKHK 294 (298) Q Consensus 275 i~~~~~~k~~~~~~~~~~~e 294 (298) +....||||++-+...||.+ T Consensus 165 ia~icYrrrRkGKl~~Eer~ 184 (290) T pfam05454 165 IAMICYRKKRKGKLTLEDQA 184 (290) T ss_pred HHHHHCCCCCCCCCCHHHHH T ss_conf 99996502125777610666 No 40 >PRK06667 motB flagellar motor protein MotB; Validated Probab=23.56 E-value=45 Score=13.10 Aligned_cols=35 Identities=6% Similarity=-0.037 Sum_probs=19.5 Q ss_pred HHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9961976556--4788888987899989999986310 Q gi|254780578|r 102 ARFMEATSKF--GAQLDSLADVINFGVAPSLVTYIAV 136 (298) Q Consensus 102 AR~~~~~s~~--G~~ld~~~D~vsFgvaPail~y~~~ 136 (298) ||+.+.+.+- +.|+-+.||++|--++-.+++|.+. T Consensus 4 ~kkK~~e~~~g~~~WlvtyADlmTLLlaFFVlL~smS 40 (254) T PRK06667 4 AKKKCPKCIQGAPEYMLTYGDMVTLLLCFFVMLFSLN 40 (254) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7778999999986188899999999999999999984 No 41 >PRK10238 aromatic amino acid transporter; Provisional Probab=23.30 E-value=46 Score=13.07 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=5.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780578|r 265 STLCYIMLLPISFY 278 (298) Q Consensus 265 l~~~Yll~~pi~~~ 278 (298) ....+++...+.|+ T Consensus 431 ~~~~~~~~l~~~y~ 444 (456) T PRK10238 431 LIPVWLIVLGIGYL 444 (456) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999978873 No 42 >cd00489 Barstar_like Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it, thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase. Probab=22.56 E-value=48 Score=12.98 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=23.8 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 7999961976556478888898789998 Q gi|254780578|r 99 GRIARFMEATSKFGAQLDSLADVINFGV 126 (298) Q Consensus 99 G~~AR~~~~~s~~G~~ld~~~D~vsFgv 126 (298) -.+|+.++-..-||.-+|.+.|.+|-.+ T Consensus 16 ~~~~~~l~fP~~yG~N~DAl~D~lt~~~ 43 (85) T cd00489 16 ARLKKKLGFPDYYGHNLDALWDCLTGLV 43 (85) T ss_pred HHHHHHCCCCHHHCCCHHHHHHHHCCCC T ss_conf 9999982997153264899999863665 No 43 >PRK11357 frlA putative fructoselysine transporter; Provisional Probab=20.65 E-value=52 Score=12.75 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999999998465302356 Q gi|254780578|r 265 STLCYIMLLPISFYCWKKRYGIKPE 289 (298) Q Consensus 265 l~~~Yll~~pi~~~~~~k~~~~~~~ 289 (298) .....++.+...|.+|+||++.-|+ T Consensus 419 ~~~~~~~~Gl~~Y~~~~rr~~~~~~ 443 (445) T PRK11357 419 CAVIVIATGLPAYAFWAKRSRQLNA 443 (445) T ss_pred HHHHHHHHHHHHHHHHEECHHHHCC T ss_conf 9999999998999863101786635 No 44 >TIGR00947 2A73 inorganic carbon transporter; InterPro: IPR006007 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP+ = L-glutamine + 2-oxoglutarate + NADPH + H+ This family includes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. Many photosynthetic organisms including cyanobacteria can concentrate CO_2/HCO_3^- against a greater than ten-fold concentration gradient. In cyanobacteria, the CO_2 concentrating mechanism involves: CO_2 conversion to HCO_3^- energy-dependent HCO_3^- transport, and carbonic anhydrase-catalyzed formation of CO_2 from HCO_3^- in the carboxysomes. The gene believed to encode the transporter, possibly a Na^+:HCO_3^- symporter, is designated ictB or ORF467 in Synechococcus sp. strain PCC 7942. The protein is 467 amino acyl residues long and possesses 10 putative transmembrane alpha-helical spanners. . Probab=20.13 E-value=45 Score=13.12 Aligned_cols=98 Identities=16% Similarity=0.052 Sum_probs=45.2 Q ss_pred CCCCCCHHHHCCCCCCHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHH--HHHHCCCHH--HHHHHHHHHHHHHHHHHH Q ss_conf 8987410110014321002333101303656-77899999999999999--999859879--999999999999732179 Q gi|254780578|r 26 VPSDQDEARYSFYKGKRWSLQEKEIPPFKFL-FPNLVTILAICAGFSGI--GSAIEGNYE--TAVCMVLVAAFLDGIDGR 100 (298) Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pn~~t~~~~~~g~~~i--~~~~~~~~~--~a~~~~~~a~~~D~~DG~ 100 (298) +...+|=+.+..+. +...+..|..+ |+ =||++-+-=.=..-+|. .-.-.+.+- ++.-......+|=. T Consensus 164 ~~GVE~LATW~D~~--S~~~~~~RVYS--yLGNPNLLAAYLVP~T~lS~~A~~VWR~W~PKLL~~~~~~~~~LCL~---- 235 (467) T TIGR00947 164 VDGVEELATWVDRT--SVLDFASRVYS--YLGNPNLLAAYLVPTTALSLAALVVWRRWLPKLLAIAAVIVSLLCLI---- 235 (467) T ss_pred CCCHHHHCCCCCCH--HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- T ss_conf 20023210357713--47765433444--12787789998533788889999988634789999999999999999---- Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99961976556478888898789998999998631023444 Q gi|254780578|r 101 IARFMEATSKFGAQLDSLADVINFGVAPSLVTYIAVLRQAH 141 (298) Q Consensus 101 ~AR~~~~~s~~G~~ld~~~D~vsFgvaPail~y~~~~~~~~ 141 (298) =+.|. |..|.-+|=. ..-+.++|.|...... T Consensus 236 -----lT~SR-GGWL~~~Al~----~~~~~L~~yW~~P~LP 266 (467) T TIGR00947 236 -----LTYSR-GGWLAVLALI----AVFLLLGLYWFLPRLP 266 (467) T ss_pred -----HHHCC-CHHHHHHHHH----HHHHHHHHHHCCCCCC T ss_conf -----86057-1899999999----9999998873066888 Done!