Query gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 298
No_of_seqs 175 out of 1932
Neff 7.6
Searched_HMMs 33803
Date Wed Jun 1 17:33:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780578.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3gia_A Uncharacterized protei 86.4 1.8 5.2E-05 20.8 15.6 18 85-102 189-206 (444)
2 >3l1l_A Arginine/agmatine anti 67.1 7 0.00021 17.4 12.4 20 87-106 197-216 (445)
3 >2jln_A MHP1; hydantoin, trans 52.1 13 0.00038 15.8 4.3 16 258-273 81-96 (152)
4 >2cx6_A Hypothetical protein Y 26.2 35 0.001 13.4 2.2 28 100-127 20-47 (90)
5 >2knc_A Integrin alpha-IIB; tr 23.8 39 0.0011 13.1 4.8 15 280-294 39-53 (54)
6 >2za4_B Barstar; protein-prote 21.8 43 0.0013 12.9 2.2 27 100-126 20-46 (90)
7 >2hyd_A ABC transporter homolo 14.9 62 0.0018 12.0 2.5 25 57-81 32-56 (221)
8 >1mhs_A Proton pump, plasma me 14.6 64 0.0019 11.9 6.2 45 213-257 258-304 (339)
9 >3b60_A Lipid A export ATP-bin 14.2 65 0.0019 11.8 3.7 49 57-105 27-76 (215)
10 >3h90_A Ferrous-iron efflux pu 13.3 69 0.002 11.7 2.3 31 101-131 23-53 (202)
No 1
>>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C (A:)
Probab=86.41 E-value=1.8 Score=20.78 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999973217999
Q gi|254780578|r 85 VCMVLVAAFLDGIDGRIA 102 (298)
Q Consensus 85 ~~~~~~a~~~D~~DG~~A 102 (298)
..+......+=.+.|.-+
T Consensus 189 ~~~~~~~~~~~~~~G~~~ 206 (444)
T 3gia_A 189 GMIFASAIFFLSYMGFGV 206 (444)
T ss_dssp HHHHHHHHGGGGGTHHHH
T ss_pred CCHHHHHHHHHHCCCCCH
T ss_conf 412355543320233100
No 2
>>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3hqk_A (A:)
Probab=67.09 E-value=7 Score=17.38 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999732179999619
Q gi|254780578|r 87 MVLVAAFLDGIDGRIARFME 106 (298)
Q Consensus 87 ~~~~a~~~D~~DG~~AR~~~ 106 (298)
+......+.+.|.....--.
T Consensus 197 ~~~~~~~~~g~~~~~~~~~e 216 (445)
T 3l1l_A 197 LNVTLWSFIGVESASVAAGV 216 (445)
T ss_dssp HHHHHHTTTTTTHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHCCHHH
T ss_conf 99999998436542021676
No 3
>>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* (A:1-20,A:370-501)
Probab=52.07 E-value=13 Score=15.84 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6999999999999999
Q gi|254780578|r 258 LWEMIIFSTLCYIMLL 273 (298)
Q Consensus 258 ~~~~L~il~~~Yll~~ 273 (298)
....+++...+|.++.
T Consensus 81 ~~~g~~~s~~vY~iL~ 96 (152)
T 2jln_A 81 FVTGLIAALLLHIPAM 96 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 4
>>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics, NPPSFA; 2.43A {Escherichia coli O157} (A:)
Probab=26.25 E-value=35 Score=13.40 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999619765564788888987899989
Q gi|254780578|r 100 RIARFMEATSKFGAQLDSLADVINFGVA 127 (298)
Q Consensus 100 ~~AR~~~~~s~~G~~ld~~~D~vsFgva 127 (298)
.+|+.++-.+.||.-+|.+.|.++-+.-
T Consensus 20 ~la~~l~fP~yfG~NlDAl~DcL~d~~~ 47 (90)
T 2cx6_A 20 DFSQTFGLAKDKVRDLDSLWDVLXNDVL 47 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHHTTCS
T ss_pred HHHHHCCCCHHHCCCHHHHHHHHCCCCC
T ss_conf 9999819961424688999999747776
No 5
>>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (A:)
Probab=23.80 E-value=39 Score=13.13 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=6.0
Q ss_pred HHHHHCCCCCCCCHH
Q ss_conf 846530235654201
Q gi|254780578|r 280 WKKRYGIKPEQKKHK 294 (298)
Q Consensus 280 ~~k~~~~~~~~~~~e 294 (298)
+||++..+++++++|
T Consensus 39 FKR~~~~~~~~~~~~ 53 (54)
T 2knc_A 39 FKRNRPPLEEDDEEG 53 (54)
T ss_dssp TTTTCCSCCCCSSSC
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 015799876431024
No 6
>>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A* (B:)
Probab=21.77 E-value=43 Score=12.89 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999961976556478888898789998
Q gi|254780578|r 100 RIARFMEATSKFGAQLDSLADVINFGV 126 (298)
Q Consensus 100 ~~AR~~~~~s~~G~~ld~~~D~vsFgv 126 (298)
.+|+.++-.+.||.-+|.+.|.++-+.
T Consensus 20 ~~~~~l~fP~yfG~NlDAl~D~L~d~~ 46 (90)
T 2za4_B 20 TLKKELALPEYYGENLDALWAALTGWV 46 (90)
T ss_dssp HHHHHTTCCTTCCCSHHHHHHHHHHTC
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 999981998100786889999973888
No 7
>>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} (A:108-328)
Probab=14.89 E-value=62 Score=11.95 Aligned_cols=25 Identities=8% Similarity=-0.215 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 7789999999999999999985987
Q gi|254780578|r 57 FPNLVTILAICAGFSGIGSAIEGNY 81 (298)
Q Consensus 57 ~pn~~t~~~~~~g~~~i~~~~~~~~ 81 (298)
+++++...-.+.+.....+.++...
T Consensus 32 ~~~~~~~~~~~i~~~~~~~~~~~~l 56 (221)
T 2hyd_A 32 LMNIWLDCITIIIALSIMFFLDVKL 56 (221)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 8
>>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} (A:17-35,A:164-175,A:274-372,A:671-879)
Probab=14.55 E-value=64 Score=11.90 Aligned_cols=45 Identities=4% Similarity=-0.148 Sum_probs=18.9
Q ss_pred HHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999875--10343350122233200079999999999999985
Q gi|254780578|r 213 TIYAMIISFL--LCSRLPVWSGKKIHRKFVLPIVLCSVAYIAFMIHF 257 (298)
Q Consensus 213 ~~~~~iis~L--mVs~i~~~s~K~~~~~~~~~~ll~i~l~i~ll~~~ 257 (298)
.....+.+.+ .+.|-+.+.++..+.+......+...++...+..+
T Consensus 258 fl~l~~s~~~~if~~Rt~~~f~~~~Ps~~l~~a~~~~~~i~~~i~~~ 304 (339)
T 1mhs_A 258 FLQISLTENWLIFITRANGPFWSSIPSWQLSGAIFLVDILATCFTIW 304 (339)
T ss_dssp HHHHHHHHHHHTTSSSCSSSCSCCSCTHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999844893353176899999999999999999999
No 9
>>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:117-331)
Probab=14.18 E-value=65 Score=11.84 Aligned_cols=49 Identities=10% Similarity=-0.047 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 778999999999999999998598799-9999999999973217999961
Q gi|254780578|r 57 FPNLVTILAICAGFSGIGSAIEGNYET-AVCMVLVAAFLDGIDGRIARFM 105 (298)
Q Consensus 57 ~pn~~t~~~~~~g~~~i~~~~~~~~~~-a~~~~~~a~~~D~~DG~~AR~~ 105 (298)
+++++...-.+.+.+.+.+..+..+.. .+.++.+..+.-..-++..|+.
T Consensus 27 ~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 76 (215)
T 3b60_A 27 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSI 76 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36777766406344567999978999899989999999998889999999
No 10
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202)
Probab=13.32 E-value=69 Score=11.70 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=22.2
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9996197655647888889878999899999
Q gi|254780578|r 101 IARFMEATSKFGAQLDSLADVINFGVAPSLV 131 (298)
Q Consensus 101 ~AR~~~~~s~~G~~ld~~~D~vsFgvaPail 131 (298)
.+=.+|..+-+..-++++.|.++.+++-...
T Consensus 23 ~g~~t~S~allada~~sl~d~~~~~~~l~~~ 53 (202)
T 3h90_A 23 AWWYTGSVSILAALVDSLVDIGASLTNLLVV 53 (202)
T ss_dssp SSCSSSSSCCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999808999999999999999999999999
Done!