Query         gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 298
No_of_seqs    175 out of 1932
Neff          7.6 
Searched_HMMs 23785
Date          Tue May 31 18:48:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780578.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3l1l_A Arginine/agmatine antip  62.4       6 0.00025   16.9  12.2   36  260-295   408-443 (445)
  2 2cx6_A Hypothetical protein YH  24.6      26  0.0011   13.2   2.2   27  100-126    20-46  (90)
  3 2za4_B Barstar; protein-protei  15.7      42  0.0018   12.1   2.2   26  100-125    20-45  (90)
  4 2j8s_A ACRB, acriflavine resis  14.5      45  0.0019   11.9   4.2   29  262-290  1011-1039(1055)
  5 3h90_A Ferrous-iron efflux pum   9.9      63  0.0027   11.0   2.1   25  104-128    26-50  (283)
  6 1ty4_C Egg laying defective EG   7.8      78  0.0033   10.5   0.6   14   89-102    27-40  (57)
  7 2k02_A Ferrous iron transport    7.8      54  0.0023   11.4  -0.6   20    1-20     43-62  (87)
  8 2aff_B MKI67 FHA domain intera   6.5      90  0.0038   10.2   1.3   20  278-297    17-36  (44)
  9 2vs7_A I-DMOI, homing endonucl   6.4      51  0.0022   11.6  -1.2   41   85-126   105-147 (199)
 10 1cd1_A CD1, MCD1D.1; immunolog   5.9      98  0.0041    9.9   0.0   32  259-290   284-315 (315)

No 1  
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3hqk_A
Probab=62.45  E-value=6  Score=16.86  Aligned_cols=36  Identities=3%  Similarity=0.030  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             999999999999999999998465302356542010
Q gi|254780578|r  260 EMIIFSTLCYIMLLPISFYCWKKRYGIKPEQKKHKD  295 (298)
Q Consensus       260 ~~L~il~~~Yll~~pi~~~~~~k~~~~~~~~~~~ed  295 (298)
                      .........+.+...+.++.++|+++....-|+.+|
T Consensus       408 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~  443 (445)
T 3l1l_A          408 KEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPIS  443 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCCSSCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999999999999999999974279998767857


No 2  
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics, NPPSFA; 2.43A {Escherichia coli O157} SCOP: c.9.1.1
Probab=24.56  E-value=26  Score=13.21  Aligned_cols=27  Identities=26%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             999961976556478888898789998
Q gi|254780578|r  100 RIARFMEATSKFGAQLDSLADVINFGV  126 (298)
Q Consensus       100 ~~AR~~~~~s~~G~~ld~~~D~vsFgv  126 (298)
                      .+|+.++-.+.||+-+|.+.|.++-++
T Consensus        20 ~l~~~~~~p~~fG~NlDAl~D~Lt~~~   46 (90)
T 2cx6_A           20 DFSQTFGLAKDKVRDLDSLWDVLMNDV   46 (90)
T ss_dssp             HHHHHTTCCTTSCSSHHHHHHHHHTTC
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             999873997101688899999864688


No 3  
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=15.68  E-value=42  Score=12.08  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99996197655647888889878999
Q gi|254780578|r  100 RIARFMEATSKFGAQLDSLADVINFG  125 (298)
Q Consensus       100 ~~AR~~~~~s~~G~~ld~~~D~vsFg  125 (298)
                      .+++.++-...||.-+|.+.|.++-+
T Consensus        20 ~l~~~l~~P~yfG~N~DAl~D~Ltd~   45 (90)
T 2za4_B           20 TLKKELALPEYYGENLDALWAALTGW   45 (90)
T ss_dssp             HHHHHTTCCTTCCCSHHHHHHHHHHT
T ss_pred             HHHHHCCCCHHHCCCHHHHHHHHCCC
T ss_conf             99998299602168878999997388


No 4  
>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ...
Probab=14.50  E-value=45  Score=11.89  Aligned_cols=29  Identities=24%  Similarity=0.526  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999999999984653023565
Q gi|254780578|r  262 IIFSTLCYIMLLPISFYCWKKRYGIKPEQ  290 (298)
Q Consensus       262 L~il~~~Yll~~pi~~~~~~k~~~~~~~~  290 (298)
                      +.+..++=+++.|+.|..+.|++..+.++
T Consensus      1011 L~~st~ltL~~vP~ly~~~~~~~~~k~~~ 1039 (1055)
T 2j8s_A         1011 MVTATVLAIFFVPVFFVVVRRRFSRKNED 1039 (1055)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999999999998753146776


No 5  
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=9.93  E-value=63  Score=11.05  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=17.7

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6197655647888889878999899
Q gi|254780578|r  104 FMEATSKFGAQLDSLADVINFGVAP  128 (298)
Q Consensus       104 ~~~~~s~~G~~ld~~~D~vsFgvaP  128 (298)
                      ..|..+-+..-+||+.|.++..++-
T Consensus        26 ~tgS~allaDa~hs~~D~~~~~i~l   50 (283)
T 3h90_A           26 YTGSVSILAALVDSLVDIGASLTNL   50 (283)
T ss_dssp             SSSSSCCCSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9807999999999999999999999


No 6  
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=7.80  E-value=78  Score=10.53  Aligned_cols=14  Identities=29%  Similarity=0.451  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999973217999
Q gi|254780578|r   89 LVAAFLDGIDGRIA  102 (298)
Q Consensus        89 ~~a~~~D~~DG~~A  102 (298)
                      -+|+.||.+|..+.
T Consensus        27 klaamcd~fda~mm   40 (57)
T 1ty4_C           27 KLAAMCDDFDAQMM   40 (57)
T ss_dssp             HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999889889999


No 7  
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=7.77  E-value=54  Score=11.44  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=10.9

Q ss_pred             CCCHHHHHHHHCCCCCCCCC
Q ss_conf             97126666532114665547
Q gi|254780578|r    1 MGNTLQCKEIPRGKKKYNVL   20 (298)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~   20 (298)
                      |||.|+-.|.+.|-+-||+.
T Consensus        43 MGKierie~~~sgCLsGSCK   62 (87)
T 2k02_A           43 MGKVVRISETSEGCLSGSCK   62 (87)
T ss_dssp             TCCSEEEEEECCSSCSSSSS
T ss_pred             CCCEEEECCCCCCCCCCCCC
T ss_conf             35767603455756477778


No 8  
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=6.53  E-value=90  Score=10.17  Aligned_cols=20  Identities=15%  Similarity=0.071  Sum_probs=9.1

Q ss_pred             HHHHHHHCCCCCCCCHHHCC
Q ss_conf             99846530235654201013
Q gi|254780578|r  278 YCWKKRYGIKPEQKKHKDYI  297 (298)
Q Consensus       278 ~~~~k~~~~~~~~~~~ed~~  297 (298)
                      +-.||....+.+.|+++|++
T Consensus        17 LErRKs~~~~~~~d~~D~EI   36 (44)
T 2aff_B           17 LERRKSQVAELNDDDKDDEI   36 (44)
T ss_dssp             HHHHHHHHHHCCGGGGSCSE
T ss_pred             HHHHHHHHHHCCCCCCCCEE
T ss_conf             98888787531787667757


No 9  
>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A
Probab=6.40  E-value=51  Score=11.56  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHH-HHHH
Q ss_conf             999999999973217999-96197655647888889878-9998
Q gi|254780578|r   85 VCMVLVAAFLDGIDGRIA-RFMEATSKFGAQLDSLADVI-NFGV  126 (298)
Q Consensus        85 ~~~~~~a~~~D~~DG~~A-R~~~~~s~~G~~ld~~~D~v-sFgv  126 (298)
                      ...-++++++|+ ||.+- ++...+|.--..++.+.-++ +||+
T Consensus       105 ~~~aFL~GLfDa-DG~v~~~~i~~~s~s~~Ll~~v~~lL~~lGI  147 (199)
T 2vs7_A          105 EQIAFIKGLYVA-EGDKTLKRLRIWNKNKALLEIVSRWLNNLGV  147 (199)
T ss_dssp             HHHHHHHHHHHH-HBCSSCSSEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCC-CCCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             999999998456-8863378799997899999999999997798


No 10 
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=5.93  E-value=98  Score=9.95  Aligned_cols=32  Identities=9%  Similarity=0.402  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999999999999984653023565
Q gi|254780578|r  259 WEMIIFSTLCYIMLLPISFYCWKKRYGIKPEQ  290 (298)
Q Consensus       259 ~~~L~il~~~Yll~~pi~~~~~~k~~~~~~~~  290 (298)
                      +.+..+..++-++.+.+.++.||||+..++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~kkk~~~~~~~  315 (315)
T 1cd1_A          284 GLIVFIVLIMLVVVGAVVYYIWRRRSAYQDIR  315 (315)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHEEEEEEECCCCCCCC
T ss_conf             46465899999999963368997015789999


Done!