Query gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 298 No_of_seqs 175 out of 1932 Neff 7.6 Searched_HMMs 23785 Date Tue May 31 18:48:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780578.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3l1l_A Arginine/agmatine antip 62.4 6 0.00025 16.9 12.2 36 260-295 408-443 (445) 2 2cx6_A Hypothetical protein YH 24.6 26 0.0011 13.2 2.2 27 100-126 20-46 (90) 3 2za4_B Barstar; protein-protei 15.7 42 0.0018 12.1 2.2 26 100-125 20-45 (90) 4 2j8s_A ACRB, acriflavine resis 14.5 45 0.0019 11.9 4.2 29 262-290 1011-1039(1055) 5 3h90_A Ferrous-iron efflux pum 9.9 63 0.0027 11.0 2.1 25 104-128 26-50 (283) 6 1ty4_C Egg laying defective EG 7.8 78 0.0033 10.5 0.6 14 89-102 27-40 (57) 7 2k02_A Ferrous iron transport 7.8 54 0.0023 11.4 -0.6 20 1-20 43-62 (87) 8 2aff_B MKI67 FHA domain intera 6.5 90 0.0038 10.2 1.3 20 278-297 17-36 (44) 9 2vs7_A I-DMOI, homing endonucl 6.4 51 0.0022 11.6 -1.2 41 85-126 105-147 (199) 10 1cd1_A CD1, MCD1D.1; immunolog 5.9 98 0.0041 9.9 0.0 32 259-290 284-315 (315) No 1 >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3hqk_A Probab=62.45 E-value=6 Score=16.86 Aligned_cols=36 Identities=3% Similarity=0.030 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH Q ss_conf 999999999999999999998465302356542010 Q gi|254780578|r 260 EMIIFSTLCYIMLLPISFYCWKKRYGIKPEQKKHKD 295 (298) Q Consensus 260 ~~L~il~~~Yll~~pi~~~~~~k~~~~~~~~~~~ed 295 (298) .........+.+...+.++.++|+++....-|+.+| T Consensus 408 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 443 (445) T 3l1l_A 408 KEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPIS 443 (445) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCSSCCCCC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 999999999999999999999974279998767857 No 2 >2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics, NPPSFA; 2.43A {Escherichia coli O157} SCOP: c.9.1.1 Probab=24.56 E-value=26 Score=13.21 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.9 Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 999961976556478888898789998 Q gi|254780578|r 100 RIARFMEATSKFGAQLDSLADVINFGV 126 (298) Q Consensus 100 ~~AR~~~~~s~~G~~ld~~~D~vsFgv 126 (298) .+|+.++-.+.||+-+|.+.|.++-++ T Consensus 20 ~l~~~~~~p~~fG~NlDAl~D~Lt~~~ 46 (90) T 2cx6_A 20 DFSQTFGLAKDKVRDLDSLWDVLMNDV 46 (90) T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHHTTC T ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCC T ss_conf 999873997101688899999864688 No 3 >2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A* Probab=15.68 E-value=42 Score=12.08 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.2 Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99996197655647888889878999 Q gi|254780578|r 100 RIARFMEATSKFGAQLDSLADVINFG 125 (298) Q Consensus 100 ~~AR~~~~~s~~G~~ld~~~D~vsFg 125 (298) .+++.++-...||.-+|.+.|.++-+ T Consensus 20 ~l~~~l~~P~yfG~N~DAl~D~Ltd~ 45 (90) T 2za4_B 20 TLKKELALPEYYGENLDALWAALTGW 45 (90) T ss_dssp HHHHHTTCCTTCCCSHHHHHHHHHHT T ss_pred HHHHHCCCCHHHCCCHHHHHHHHCCC T ss_conf 99998299602168878999997388 No 4 >2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... Probab=14.50 E-value=45 Score=11.89 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999999999984653023565 Q gi|254780578|r 262 IIFSTLCYIMLLPISFYCWKKRYGIKPEQ 290 (298) Q Consensus 262 L~il~~~Yll~~pi~~~~~~k~~~~~~~~ 290 (298) +.+..++=+++.|+.|..+.|++..+.++ T Consensus 1011 L~~st~ltL~~vP~ly~~~~~~~~~k~~~ 1039 (1055) T 2j8s_A 1011 MVTATVLAIFFVPVFFVVVRRRFSRKNED 1039 (1055) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999999999998753146776 No 5 >3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Probab=9.93 E-value=63 Score=11.05 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=17.7 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6197655647888889878999899 Q gi|254780578|r 104 FMEATSKFGAQLDSLADVINFGVAP 128 (298) Q Consensus 104 ~~~~~s~~G~~ld~~~D~vsFgvaP 128 (298) ..|..+-+..-+||+.|.++..++- T Consensus 26 ~tgS~allaDa~hs~~D~~~~~i~l 50 (283) T 3h90_A 26 YTGSVSILAALVDSLVDIGASLTNL 50 (283) T ss_dssp SSSSSCCCSTTTHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9807999999999999999999999 No 6 >1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans} Probab=7.80 E-value=78 Score=10.53 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999973217999 Q gi|254780578|r 89 LVAAFLDGIDGRIA 102 (298) Q Consensus 89 ~~a~~~D~~DG~~A 102 (298) -+|+.||.+|..+. T Consensus 27 klaamcd~fda~mm 40 (57) T 1ty4_C 27 KLAAMCDDFDAQMM 40 (57) T ss_dssp HHHHHHHHHHHHHG T ss_pred HHHHHHHHHHHHHH T ss_conf 99999889889999 No 7 >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Probab=7.77 E-value=54 Score=11.44 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=10.9 Q ss_pred CCCHHHHHHHHCCCCCCCCC Q ss_conf 97126666532114665547 Q gi|254780578|r 1 MGNTLQCKEIPRGKKKYNVL 20 (298) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (298) |||.|+-.|.+.|-+-||+. T Consensus 43 MGKierie~~~sgCLsGSCK 62 (87) T 2k02_A 43 MGKVVRISETSEGCLSGSCK 62 (87) T ss_dssp TCCSEEEEEECCSSCSSSSS T ss_pred CCCEEEECCCCCCCCCCCCC T ss_conf 35767603455756477778 No 8 >2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens} Probab=6.53 E-value=90 Score=10.17 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=9.1 Q ss_pred HHHHHHHCCCCCCCCHHHCC Q ss_conf 99846530235654201013 Q gi|254780578|r 278 YCWKKRYGIKPEQKKHKDYI 297 (298) Q Consensus 278 ~~~~k~~~~~~~~~~~ed~~ 297 (298) +-.||....+.+.|+++|++ T Consensus 17 LErRKs~~~~~~~d~~D~EI 36 (44) T 2aff_B 17 LERRKSQVAELNDDDKDDEI 36 (44) T ss_dssp HHHHHHHHHHCCGGGGSCSE T ss_pred HHHHHHHHHHCCCCCCCCEE T ss_conf 98888787531787667757 No 9 >2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A Probab=6.40 E-value=51 Score=11.56 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHH-HHHH Q ss_conf 999999999973217999-96197655647888889878-9998 Q gi|254780578|r 85 VCMVLVAAFLDGIDGRIA-RFMEATSKFGAQLDSLADVI-NFGV 126 (298) Q Consensus 85 ~~~~~~a~~~D~~DG~~A-R~~~~~s~~G~~ld~~~D~v-sFgv 126 (298) ...-++++++|+ ||.+- ++...+|.--..++.+.-++ +||+ T Consensus 105 ~~~aFL~GLfDa-DG~v~~~~i~~~s~s~~Ll~~v~~lL~~lGI 147 (199) T 2vs7_A 105 EQIAFIKGLYVA-EGDKTLKRLRIWNKNKALLEIVSRWLNNLGV 147 (199) T ss_dssp HHHHHHHHHHHH-HBCSSCSSEEEEESCHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHCC-CCCCCCCEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 999999998456-8863378799997899999999999997798 No 10 >1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 Probab=5.93 E-value=98 Score=9.95 Aligned_cols=32 Identities=9% Similarity=0.402 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999999999999984653023565 Q gi|254780578|r 259 WEMIIFSTLCYIMLLPISFYCWKKRYGIKPEQ 290 (298) Q Consensus 259 ~~~L~il~~~Yll~~pi~~~~~~k~~~~~~~~ 290 (298) +.+..+..++-++.+.+.++.||||+..++.+ T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~kkk~~~~~~~ 315 (315) T 1cd1_A 284 GLIVFIVLIMLVVVGAVVYYIWRRRSAYQDIR 315 (315) T ss_dssp -------------------------------- T ss_pred HHHHHHHHHHHHHHHHHEEEEEEECCCCCCCC T ss_conf 46465899999999963368997015789999 Done!