RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase
[Candidatus Liberibacter asiaticus str. psy62]
(298 letters)
>gnl|CDD|31376 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].
Length = 234
Score = 165 bits (420), Expect = 1e-41
Identities = 80/242 (33%), Positives = 134/242 (55%), Gaps = 17/242 (7%)
Query: 50 IPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATS 109
+L PNL+T L + G I +A+EG +E A+ ++L+A LDG+DGR+AR + A S
Sbjct: 4 RIKRLYLLPNLITALGLFLGLLSIVAALEGRFEAALLLILLALILDGLDGRVARKLNAKS 63
Query: 110 KFGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIMNDCD 169
FGA+LDSLAD+++FGVAP+L+ Y + L G AL+Y + +LRLARFN+ + D
Sbjct: 64 AFGAELDSLADLVSFGVAPALLLYSSGLNTGP-LGLLAALLYVLCGALRLARFNVKTNDD 122
Query: 170 EKDNWKSEYFVGVPAPLGA--ILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSRL 227
+F+G+P P A ++L++ LY + +V+ + +++S L+ S +
Sbjct: 123 ------KNFFIGLPIPAAAVVVVLLVLLYHSLPTGLATVLL----SGILLLLSILMVSNI 172
Query: 228 PVWSGKKIHR----KFVLPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLPISFYCWKKR 283
P S KK++ +L +L +I + W +++ Y++ +PI W K+
Sbjct: 173 PFPSLKKLNALVRVVLLLAGILLLALLALVLILYPWLLLLVIASGYLLSIPIRVRQWFKK 232
Query: 284 YG 285
G
Sbjct: 233 LG 234
>gnl|CDD|144601 pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase.
All of these members have the ability to catalyse the
displacement of CMP from a CDP-alcohol by a second
alcohol with formation of a phosphodiester bond and
concomitant breaking of a phosphoride anhydride bond.
Length = 96
Score = 69.6 bits (171), Expect = 1e-12
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 54 KFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGA 113
+ PNL+T+L + G + G Y A ++L+A LDG+DG++AR +S GA
Sbjct: 1 LGITPNLITLLRLILGLLAALLLLLGQYLLAALLLLLAGLLDGLDGKLARRTGQSSPLGA 60
Query: 114 QLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFN 163
LDS+AD ++ G + ++ L L
Sbjct: 61 LLDSVADRLSDVALL--------------LGLLLLGPALLSSLLLLLLLA 96
>gnl|CDD|30904 COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid
metabolism].
Length = 192
Score = 50.0 bits (119), Expect = 8e-07
Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 5/177 (2%)
Query: 54 KFLFPNLVT---ILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSK 110
PN +T I I + G A+ + L+AA D +DG +AR S+
Sbjct: 11 LGNTPNQLTLLRIFLIPLFALLLLLPGLGLLLLALVLFLLAALTDALDGYLARKWGQVSR 70
Query: 111 FGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIMNDCDE 170
FGA LD +AD + + + + +A ++ LR ++
Sbjct: 71 FGAFLDPVADKLLDAALLLGLVALGPVSPLWLAILILAREILVSY-LRALAASLGGRDYV 129
Query: 171 KDNWKSEYFVGVPA-PLGAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSR 226
+ + + + L +LL L L +L + ++ T+ I L +
Sbjct: 130 GASGRGKRKTILQMVALLLLLLGLLLTPLWLLLGLVLLAAAVLTLITGIQYLLAALK 186
>gnl|CDD|36830 KOG1617, KOG1617, KOG1617, CDP-alcohol
phosphatidyltransferase/Phosphatidylglycerol-phosphate
synthase [Lipid transport and metabolism].
Length = 243
Score = 42.2 bits (99), Expect = 2e-04
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 40 GKRWSLQEKEIPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDG 99
R L+ K PN++T+ I A I+ N+ A + VA D +DG
Sbjct: 58 PPRPQLKSK-----VLTIPNMLTLARIAATPLIGYLIIDENFTAAFGLFAVAGITDLLDG 112
Query: 100 RIARFMEATSKFGAQLDSLADVI 122
IAR M S G+ LD LAD +
Sbjct: 113 YIARKMRLGSIAGSVLDPLADKV 135
>gnl|CDD|38450 KOG3240, KOG3240, KOG3240, Phosphatidylinositol synthase [Lipid
transport and metabolism].
Length = 218
Score = 35.3 bits (81), Expect = 0.022
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 47 EKEIPPFKFLF-PNLV---TILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIA 102
+K + FL+ PNL+ I+ F + S N T + L+++ LD DG A
Sbjct: 4 KKPMKESVFLYIPNLIGYMRIVLAILSFYVMSS----NPTTFSVLYLLSSLLDAFDGWAA 59
Query: 103 RFMEATSKFGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIA 154
R + S+FGA LD + D + L+ ++ + + +++ IA
Sbjct: 60 RKLNQVSRFGAMLDMVTDRCSTAC---LLVFLCQFYPPYLVFFQLSMALDIA 108
>gnl|CDD|35937 KOG0718, KOG0718, KOG0718, Molecular chaperone (DnaJ superfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 546
Score = 31.5 bits (71), Expect = 0.28
Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 49/200 (24%)
Query: 107 ATSKFGAQLDSLAD---VINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFN 163
T QLD +N G+ ++ T +++ + ++ + + +
Sbjct: 242 LTVVLARQLDKFTSGSIALNRGIQSAMTTTWVHMKENPSLAVNLEIGSPHMYAGIAYTYK 301
Query: 164 IMNDCDEKDNWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYG------STIYAM 217
+ N + + + L + G ++ YG ST+ A
Sbjct: 302 LKNATESQ-------------------IKLSTKMGTFGLQVE--YGTERKVSRYSTVGAN 340
Query: 218 IISFLLCSRLPVWSGKKIHR---KFVLPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLP 274
+ S + S + K+ R K+ PI LC + + Y ++ P
Sbjct: 341 V-SVGVPSGI-TLK-VKLLRAGQKYSFPIHLCDELLPSAVF-------------YALVFP 384
Query: 275 ISFYCWKKRYGIKPEQKKHK 294
I+ Y K++ ++P K K
Sbjct: 385 ITSYFGLKKFVLRPYLLKRK 404
>gnl|CDD|39402 KOG4201, KOG4201, KOG4201, Anthranilate synthase component II
[Amino acid transport and metabolism].
Length = 289
Score = 30.4 bits (68), Expect = 0.71
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 106 EATSKFGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIA 148
E K G L L ++ G+AP L + LR +H IA
Sbjct: 33 EMKEKPGFTLQDLQKALDLGLAPPLQDFYGALRSSHKRPGLIA 75
>gnl|CDD|112978 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V)). This is
a family of eukaryotic ER membrane proteins that are
involved in the synthesis of
glycosylphosphatidylinositol (GPI), a glycolipid that
anchors many proteins to the eukaryotic cell surface.
Proteins in this family are involved in transferring the
second mannose in the biosynthetic pathway of GPI.
Length = 412
Score = 27.9 bits (62), Expect = 3.6
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 35 YSFYKGKRWSL------QEKEIPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMV 88
YS+ + W++ IP FLF IL I + +Y +V
Sbjct: 276 YSYIQSHYWNVGFLKYWTLNNIP--NFLFAVPNIILLIYSSIYYSKGLQYPSYNKKASLV 333
Query: 89 LVAAFL 94
+ A L
Sbjct: 334 VHTAAL 339
>gnl|CDD|33138 COG3329, COG3329, Predicted permease [General function prediction
only].
Length = 372
Score = 27.6 bits (61), Expect = 3.8
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 60 LVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLA 119
L L + GF G N V V + L + IA F+ +D+ A
Sbjct: 46 LSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKLPKVDTVDAAA 105
Query: 120 DVINFGVAPSLVTYIAVL 137
+G + S VT+ A +
Sbjct: 106 TAGTYG-SVSAVTFAAAV 122
>gnl|CDD|32723 COG2898, COG2898, Uncharacterized conserved protein [Function
unknown].
Length = 538
Score = 27.5 bits (61), Expect = 4.0
Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 64 LAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVIN 123
+ G+ ++ + A+ ++++ L + + A + L V+
Sbjct: 65 ALLLLLARGLRKRLKRAWIAALIVLILGLVLS--------LAKGLAWIEAAVLFLIAVLL 116
Query: 124 FGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIMNDCDEKDNWKSEYFVGV- 182
+ +L Q+ + GW A + +A + L F + D W F G
Sbjct: 117 LAGRRAFYRKSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSA 176
Query: 183 PAPLGAILLMLPLYINFLGFKI 204
P L A+L + I + +
Sbjct: 177 PRFLRALLGVFIALIALGIWAL 198
>gnl|CDD|38926 KOG3722, KOG3722, KOG3722, Lipocalin-interacting membrane receptor
(LIMR) [Defense mechanisms].
Length = 538
Score = 27.6 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 254 MIHFLWEMI-IFSTLCYIMLLPISFY 278
+IH LW ++ +FS L +LLP +++
Sbjct: 110 LIHGLWNLVFLFSNLSLFVLLPFAYF 135
>gnl|CDD|31867 COG1681, FlaB, Archaeal flagellins [Cell motility and secretion].
Length = 209
Score = 27.6 bits (61), Expect = 4.3
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 69 GFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFM-------------EATSKFGAQL 115
G +GIG+ I + MVLVAA + F+ + +S G ++
Sbjct: 4 GATGIGTLI-----VFIAMVLVAAVAAYVLINTGGFLQQKAKATGEEGTQQVSS--GIEV 56
Query: 116 DSLADVINFGVAPSLVTYIAVLRQAHAFGWSIAL-MYTIAIS 156
+ Y+A+ +A I L TI +S
Sbjct: 57 VGAVGYAGNTTPGGTIDYLAITVTPNAGSSPIDLSKTTITLS 98
>gnl|CDD|31763 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 27.5 bits (61), Expect = 4.9
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 12/147 (8%)
Query: 118 LADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIM---NDCD-EKD- 172
L ++ L+ A Q W+I L ++ + + NI+ N D E+D
Sbjct: 149 LGEIFVGVFFGPLIVLGAYYIQTGRLSWAILL---PSLPVGILIANILLANNLRDIEEDI 205
Query: 173 -NWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSRLPVWS 231
N K V + L L + +L I VI G + FLL L + +
Sbjct: 206 RNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG---LLFLLALPLAIRA 262
Query: 232 GKKIHRKFVLPIVLCSVAYIAFMIHFL 258
+ + + V ++ +
Sbjct: 263 ARPVRQNQVPATLVPMLKNTVKANLLW 289
>gnl|CDD|32243 COG2060, KdpA, K+-transporting ATPase, A chain [Inorganic ion
transport and metabolism].
Length = 560
Score = 27.1 bits (60), Expect = 5.9
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 185 PLGAILLMLPLYIN--FLGFKISVIYGYGSTIYAMIISFLLCSRLPVWSGKKIHRK---- 238
PLG ++ + + + F G + I + I+ L+ R P + GKKI K
Sbjct: 359 PLGGMVPLFLMQLGEVFGGVGSGLYGMLLFVILTVFIAGLMVGRTPEYLGKKIEAKEMKL 418
Query: 239 -----FVLPIVLCSVAYIAFMI 255
V P+++ IA M+
Sbjct: 419 AALAILVHPLLVLIFTAIALML 440
>gnl|CDD|35431 KOG0210, KOG0210, KOG0210, P-type ATPase [Inorganic ion transport and
metabolism].
Length = 1051
Score = 26.8 bits (59), Expect = 7.6
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 190 LLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSRLPVWSGKKIHRKFVLP 242
L + + + FL + + L S LP++ K + RK P
Sbjct: 992 LALYIVSLAFLHEYFDRYFILTYVFLWKVTVITLVSCLPLYFIKALRRKLSPP 1044
>gnl|CDD|30666 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 26.6 bits (58), Expect = 7.6
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 132 TYIAVLRQAHAFGWSIALMYTIAIS-----LRLARFNIMNDCDEKDNWKSEYFVGVPAPL 186
++ L H FG + L+ + L F+ + +K GVP L
Sbjct: 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFL 275
Query: 187 GAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLL 223
+L + L + ++ G+ + ++
Sbjct: 276 RELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFE 312
>gnl|CDD|112618 pfam03814, KdpA, Potassium-transporting ATPase A subunit.
Length = 555
Score = 26.5 bits (59), Expect = 10.0
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 185 PLGAILLMLPLYIN--FLGFKISVIYGYGSTIYAMIISFLLCSRLPVWSGKKIHRK---- 238
PLG ++ +L + +N F G + ++ I + I+ L+ R P + GKKI +
Sbjct: 354 PLGGMVPLLNMMLNEIFGGVGVGLLNMLMFVILTVFIAGLMVGRTPEYLGKKIEAREIKL 413
Query: 239 -----FVLPIVLCSVAYIAFMI 255
V PI++ IA ++
Sbjct: 414 ATLAILVHPILVLIFTAIALVL 435
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.329 0.143 0.454
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,958,217
Number of extensions: 223230
Number of successful extensions: 847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 79
Length of query: 298
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,254,100
Effective search space: 872090500
Effective search space used: 872090500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.8 bits)