RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62] (298 letters) >gnl|CDD|31376 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]. Length = 234 Score = 165 bits (420), Expect = 1e-41 Identities = 80/242 (33%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 50 IPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATS 109 +L PNL+T L + G I +A+EG +E A+ ++L+A LDG+DGR+AR + A S Sbjct: 4 RIKRLYLLPNLITALGLFLGLLSIVAALEGRFEAALLLILLALILDGLDGRVARKLNAKS 63 Query: 110 KFGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIMNDCD 169 FGA+LDSLAD+++FGVAP+L+ Y + L G AL+Y + +LRLARFN+ + D Sbjct: 64 AFGAELDSLADLVSFGVAPALLLYSSGLNTGP-LGLLAALLYVLCGALRLARFNVKTNDD 122 Query: 170 EKDNWKSEYFVGVPAPLGA--ILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSRL 227 +F+G+P P A ++L++ LY + +V+ + +++S L+ S + Sbjct: 123 ------KNFFIGLPIPAAAVVVVLLVLLYHSLPTGLATVLL----SGILLLLSILMVSNI 172 Query: 228 PVWSGKKIHR----KFVLPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLPISFYCWKKR 283 P S KK++ +L +L +I + W +++ Y++ +PI W K+ Sbjct: 173 PFPSLKKLNALVRVVLLLAGILLLALLALVLILYPWLLLLVIASGYLLSIPIRVRQWFKK 232 Query: 284 YG 285 G Sbjct: 233 LG 234 >gnl|CDD|144601 pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase. All of these members have the ability to catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond. Length = 96 Score = 69.6 bits (171), Expect = 1e-12 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 14/110 (12%) Query: 54 KFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGA 113 + PNL+T+L + G + G Y A ++L+A LDG+DG++AR +S GA Sbjct: 1 LGITPNLITLLRLILGLLAALLLLLGQYLLAALLLLLAGLLDGLDGKLARRTGQSSPLGA 60 Query: 114 QLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFN 163 LDS+AD ++ G + ++ L L Sbjct: 61 LLDSVADRLSDVALL--------------LGLLLLGPALLSSLLLLLLLA 96 >gnl|CDD|30904 COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]. Length = 192 Score = 50.0 bits (119), Expect = 8e-07 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 5/177 (2%) Query: 54 KFLFPNLVT---ILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSK 110 PN +T I I + G A+ + L+AA D +DG +AR S+ Sbjct: 11 LGNTPNQLTLLRIFLIPLFALLLLLPGLGLLLLALVLFLLAALTDALDGYLARKWGQVSR 70 Query: 111 FGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIMNDCDE 170 FGA LD +AD + + + + +A ++ LR ++ Sbjct: 71 FGAFLDPVADKLLDAALLLGLVALGPVSPLWLAILILAREILVSY-LRALAASLGGRDYV 129 Query: 171 KDNWKSEYFVGVPA-PLGAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSR 226 + + + + L +LL L L +L + ++ T+ I L + Sbjct: 130 GASGRGKRKTILQMVALLLLLLGLLLTPLWLLLGLVLLAAAVLTLITGIQYLLAALK 186 >gnl|CDD|36830 KOG1617, KOG1617, KOG1617, CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase [Lipid transport and metabolism]. Length = 243 Score = 42.2 bits (99), Expect = 2e-04 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 40 GKRWSLQEKEIPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDG 99 R L+ K PN++T+ I A I+ N+ A + VA D +DG Sbjct: 58 PPRPQLKSK-----VLTIPNMLTLARIAATPLIGYLIIDENFTAAFGLFAVAGITDLLDG 112 Query: 100 RIARFMEATSKFGAQLDSLADVI 122 IAR M S G+ LD LAD + Sbjct: 113 YIARKMRLGSIAGSVLDPLADKV 135 >gnl|CDD|38450 KOG3240, KOG3240, KOG3240, Phosphatidylinositol synthase [Lipid transport and metabolism]. Length = 218 Score = 35.3 bits (81), Expect = 0.022 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%) Query: 47 EKEIPPFKFLF-PNLV---TILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIA 102 +K + FL+ PNL+ I+ F + S N T + L+++ LD DG A Sbjct: 4 KKPMKESVFLYIPNLIGYMRIVLAILSFYVMSS----NPTTFSVLYLLSSLLDAFDGWAA 59 Query: 103 RFMEATSKFGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIA 154 R + S+FGA LD + D + L+ ++ + + +++ IA Sbjct: 60 RKLNQVSRFGAMLDMVTDRCSTAC---LLVFLCQFYPPYLVFFQLSMALDIA 108 >gnl|CDD|35937 KOG0718, KOG0718, KOG0718, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 546 Score = 31.5 bits (71), Expect = 0.28 Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 49/200 (24%) Query: 107 ATSKFGAQLDSLAD---VINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFN 163 T QLD +N G+ ++ T +++ + ++ + + + Sbjct: 242 LTVVLARQLDKFTSGSIALNRGIQSAMTTTWVHMKENPSLAVNLEIGSPHMYAGIAYTYK 301 Query: 164 IMNDCDEKDNWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYG------STIYAM 217 + N + + + L + G ++ YG ST+ A Sbjct: 302 LKNATESQ-------------------IKLSTKMGTFGLQVE--YGTERKVSRYSTVGAN 340 Query: 218 IISFLLCSRLPVWSGKKIHR---KFVLPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLP 274 + S + S + K+ R K+ PI LC + + Y ++ P Sbjct: 341 V-SVGVPSGI-TLK-VKLLRAGQKYSFPIHLCDELLPSAVF-------------YALVFP 384 Query: 275 ISFYCWKKRYGIKPEQKKHK 294 I+ Y K++ ++P K K Sbjct: 385 ITSYFGLKKFVLRPYLLKRK 404 >gnl|CDD|39402 KOG4201, KOG4201, KOG4201, Anthranilate synthase component II [Amino acid transport and metabolism]. Length = 289 Score = 30.4 bits (68), Expect = 0.71 Identities = 14/43 (32%), Positives = 19/43 (44%) Query: 106 EATSKFGAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGWSIA 148 E K G L L ++ G+AP L + LR +H IA Sbjct: 33 EMKEKPGFTLQDLQKALDLGLAPPLQDFYGALRSSHKRPGLIA 75 >gnl|CDD|112978 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V)). This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI. Length = 412 Score = 27.9 bits (62), Expect = 3.6 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%) Query: 35 YSFYKGKRWSL------QEKEIPPFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVCMV 88 YS+ + W++ IP FLF IL I + +Y +V Sbjct: 276 YSYIQSHYWNVGFLKYWTLNNIP--NFLFAVPNIILLIYSSIYYSKGLQYPSYNKKASLV 333 Query: 89 LVAAFL 94 + A L Sbjct: 334 VHTAAL 339 >gnl|CDD|33138 COG3329, COG3329, Predicted permease [General function prediction only]. Length = 372 Score = 27.6 bits (61), Expect = 3.8 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 60 LVTILAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLA 119 L L + GF G N V V + L + IA F+ +D+ A Sbjct: 46 LSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKLPKVDTVDAAA 105 Query: 120 DVINFGVAPSLVTYIAVL 137 +G + S VT+ A + Sbjct: 106 TAGTYG-SVSAVTFAAAV 122 >gnl|CDD|32723 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]. Length = 538 Score = 27.5 bits (61), Expect = 4.0 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 9/142 (6%) Query: 64 LAICAGFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFMEATSKFGAQLDSLADVIN 123 + G+ ++ + A+ ++++ L + + A + L V+ Sbjct: 65 ALLLLLARGLRKRLKRAWIAALIVLILGLVLS--------LAKGLAWIEAAVLFLIAVLL 116 Query: 124 FGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIMNDCDEKDNWKSEYFVGV- 182 + +L Q+ + GW A + +A + L F + D W F G Sbjct: 117 LAGRRAFYRKSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSA 176 Query: 183 PAPLGAILLMLPLYINFLGFKI 204 P L A+L + I + + Sbjct: 177 PRFLRALLGVFIALIALGIWAL 198 >gnl|CDD|38926 KOG3722, KOG3722, KOG3722, Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]. Length = 538 Score = 27.6 bits (61), Expect = 4.2 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Query: 254 MIHFLWEMI-IFSTLCYIMLLPISFY 278 +IH LW ++ +FS L +LLP +++ Sbjct: 110 LIHGLWNLVFLFSNLSLFVLLPFAYF 135 >gnl|CDD|31867 COG1681, FlaB, Archaeal flagellins [Cell motility and secretion]. Length = 209 Score = 27.6 bits (61), Expect = 4.3 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 21/102 (20%) Query: 69 GFSGIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFM-------------EATSKFGAQL 115 G +GIG+ I + MVLVAA + F+ + +S G ++ Sbjct: 4 GATGIGTLI-----VFIAMVLVAAVAAYVLINTGGFLQQKAKATGEEGTQQVSS--GIEV 56 Query: 116 DSLADVINFGVAPSLVTYIAVLRQAHAFGWSIAL-MYTIAIS 156 + Y+A+ +A I L TI +S Sbjct: 57 VGAVGYAGNTTPGGTIDYLAITVTPNAGSSPIDLSKTTITLS 98 >gnl|CDD|31763 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]. Length = 303 Score = 27.5 bits (61), Expect = 4.9 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 12/147 (8%) Query: 118 LADVINFGVAPSLVTYIAVLRQAHAFGWSIALMYTIAISLRLARFNIM---NDCD-EKD- 172 L ++ L+ A Q W+I L ++ + + NI+ N D E+D Sbjct: 149 LGEIFVGVFFGPLIVLGAYYIQTGRLSWAILL---PSLPVGILIANILLANNLRDIEEDI 205 Query: 173 -NWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSRLPVWS 231 N K V + L L + +L I VI G + FLL L + + Sbjct: 206 RNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG---LLFLLALPLAIRA 262 Query: 232 GKKIHRKFVLPIVLCSVAYIAFMIHFL 258 + + + V ++ + Sbjct: 263 ARPVRQNQVPATLVPMLKNTVKANLLW 289 >gnl|CDD|32243 COG2060, KdpA, K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]. Length = 560 Score = 27.1 bits (60), Expect = 5.9 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 11/82 (13%) Query: 185 PLGAILLMLPLYIN--FLGFKISVIYGYGSTIYAMIISFLLCSRLPVWSGKKIHRK---- 238 PLG ++ + + + F G + I + I+ L+ R P + GKKI K Sbjct: 359 PLGGMVPLFLMQLGEVFGGVGSGLYGMLLFVILTVFIAGLMVGRTPEYLGKKIEAKEMKL 418 Query: 239 -----FVLPIVLCSVAYIAFMI 255 V P+++ IA M+ Sbjct: 419 AALAILVHPLLVLIFTAIALML 440 >gnl|CDD|35431 KOG0210, KOG0210, KOG0210, P-type ATPase [Inorganic ion transport and metabolism]. Length = 1051 Score = 26.8 bits (59), Expect = 7.6 Identities = 11/53 (20%), Positives = 19/53 (35%) Query: 190 LLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCSRLPVWSGKKIHRKFVLP 242 L + + + FL + + L S LP++ K + RK P Sbjct: 992 LALYIVSLAFLHEYFDRYFILTYVFLWKVTVITLVSCLPLYFIKALRRKLSPP 1044 >gnl|CDD|30666 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]. Length = 534 Score = 26.6 bits (58), Expect = 7.6 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 132 TYIAVLRQAHAFGWSIALMYTIAIS-----LRLARFNIMNDCDEKDNWKSEYFVGVPAPL 186 ++ L H FG + L+ + L F+ + +K GVP L Sbjct: 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFL 275 Query: 187 GAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLL 223 +L + L + ++ G+ + ++ Sbjct: 276 RELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFE 312 >gnl|CDD|112618 pfam03814, KdpA, Potassium-transporting ATPase A subunit. Length = 555 Score = 26.5 bits (59), Expect = 10.0 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%) Query: 185 PLGAILLMLPLYIN--FLGFKISVIYGYGSTIYAMIISFLLCSRLPVWSGKKIHRK---- 238 PLG ++ +L + +N F G + ++ I + I+ L+ R P + GKKI + Sbjct: 354 PLGGMVPLLNMMLNEIFGGVGVGLLNMLMFVILTVFIAGLMVGRTPEYLGKKIEAREIKL 413 Query: 239 -----FVLPIVLCSVAYIAFMI 255 V PI++ IA ++ Sbjct: 414 ATLAILVHPILVLIFTAIALVL 435 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.329 0.143 0.454 Gapped Lambda K H 0.267 0.0716 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,958,217 Number of extensions: 223230 Number of successful extensions: 847 Number of sequences better than 10.0: 1 Number of HSP's gapped: 837 Number of HSP's successfully gapped: 79 Length of query: 298 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 205 Effective length of database: 4,254,100 Effective search space: 872090500 Effective search space used: 872090500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 57 (25.8 bits)