RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)



>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C,
           DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis,
           metal-binding; 1.9A {Mycobacterium tuberculosis} PDB:
           2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A*
           (A:321-413)
          Length = 93

 Score = 28.6 bits (64), Expect = 1.1
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 88  VLVAAFLDG------IDGRIARFMEATSKFGAQLDSLADVI 122
              AAFL G      I G IA  + A  ++  +  ++ DV+
Sbjct: 12  EAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVL 52


>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix
           bundle, membrane protein; 1.40A {Dictyostelium
           discoideum} (A:)
          Length = 176

 Score = 26.7 bits (59), Expect = 4.4
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 90  VAAFLDGIDGRIARFMEATSKFGAQLDSLADVI 122
           V  F + +D  I  F+  + K   ++ +  + +
Sbjct: 2   VKEFQNLVDQHITPFVALSKKLAPEVGNQVEQL 34


>3bq9_A Predicted rossmann fold nucleotide-binding domain-containing
           protein; structural genomics, PSI-2, protein structure
           initiative; 1.80A {Idiomarina baltica OS145} (A:86-460)
          Length = 375

 Score = 26.2 bits (57), Expect = 5.2
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 229 VWSGKKIHRKFVLPIVLCSVAYIAFMIHFLWEMI 262
                  +++  LP++L   A        L E I
Sbjct: 182 GILMHPDNQRQSLPVILTGPASSRDYFEALDEFI 215


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.329    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,396,576
Number of extensions: 108369
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 13
Length of query: 298
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 210
Effective length of database: 1,981,209
Effective search space: 416053890
Effective search space used: 416053890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.7 bits)