HHsearch alignment for GI: 254780579 and conserved domain: cd06259
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=99.97 E-value=2.9e-30 Score=205.10 Aligned_cols=137 Identities=29% Similarity=0.412 Sum_probs=124.1
Q ss_pred CEEEEECCCHH----------HHHHHHHHHHHCCCCCEECCCCCC---CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH
Q ss_conf 78999469857----------999999999968998245158765---46789999987651588613322046666602
Q gi|254780579|r 38 SAIVVLTGEPI----------RIERAFELLENQIGEKIFISGVHH---SVSKDILLQKIPIRQDLAECCIDIGYKALNTE 104 (207)
Q Consensus 38 DaIVVLgGg~~----------Ri~~a~~L~~~g~~~~ii~SG~~~---~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ 104 (207)
T Consensus 1 daIvVLG~~~~~~~~~~~~~~R~~~a~~L~~~~~~~~ii~sGg~~~~~~~~Ea~~~~~~l~~~gv~~~~i~~e~~s~~T~ 80 (150)
T cd06259 1 DAIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTY 80 (150)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCH
T ss_conf 98998999879999897999999999999981999889995887999988999999999998599989968313477702
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 569999999986499818985114421999999998629987999641676667542116989999999999999
Q gi|254780579|r 105 GNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKI 179 (207)
Q Consensus 105 ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K~ 179 (207)
T Consensus 81 ena~~~~~~~~~~~~~~i~lVTs~~H~~Ra~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~~~~~~E~~~~ 150 (150)
T cd06259 81 ENARFSAELLRERGIRSVLLVTSAYHMPRALLIFRKAGLDVEVVPAPTDFYSLSS-----ALRLLRLALREYLGL 150 (150)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-----HHHHHHHHHHHHHCC
T ss_conf 4599999999976998799999888999999999980998459868877613600-----466678999998569