Query gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 207 No_of_seqs 147 out of 1321 Neff 7.2 Searched_HMMs 33803 Date Wed Jun 1 18:42:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780579.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ca8_A Protein YDCF; two doma 99.9 2.2E-27 6.4E-32 187.1 12.3 123 32-154 1-148 (151) 2 >2cxn_A Glucose-6-phosphate is 93.2 0.44 1.3E-05 26.1 7.1 109 32-151 42-165 (187) 3 >2wu8_A Glucose-6-phosphate is 92.4 0.74 2.2E-05 24.7 7.3 110 32-151 46-168 (190) 4 >3hjb_A Glucose-6-phosphate is 92.4 0.69 2E-05 24.9 7.1 111 31-151 41-164 (186) 5 >2o2c_A GPI, glucose-6-phospha 90.3 0.7 2.1E-05 24.8 5.4 120 21-151 12-153 (175) 6 >1t10_A GPI, glucose-6-phospha 89.3 0.56 1.7E-05 25.4 4.3 96 32-132 25-139 (175) 7 >1t35_A Hypothetical protein Y 86.3 1.9 5.6E-05 22.2 5.5 16 100-115 107-122 (191) 8 >2zj3_A Glucosamine--fructose- 86.3 2.2 6.6E-05 21.7 6.6 91 35-134 13-106 (159) 9 >3gh1_A Predicted nucleotide-b 85.2 2.5 7.4E-05 21.4 6.4 94 36-129 64-208 (380) 10 >1ydh_A AT5G11950; structural 81.8 3.5 0.0001 20.6 5.4 35 95-129 110-146 (216) 11 >3knz_A Putative sugar binding 81.5 3.6 0.00011 20.5 5.6 85 48-134 3-106 (149) 12 >1byk_A Protein (trehalose ope 81.3 3.6 0.00011 20.4 6.4 94 53-151 9-107 (125) 13 >2a33_A Hypothetical protein; 81.2 3.7 0.00011 20.4 6.1 36 94-129 113-150 (215) 14 >1zzg_A Glucose-6-phosphate is 80.4 3.9 0.00011 20.3 8.4 111 33-151 20-139 (162) 15 >3d8u_A PURR transcriptional r 79.1 4.3 0.00013 20.0 10.1 99 52-150 9-114 (121) 16 >3dmp_A Uracil phosphoribosylt 78.8 4.4 0.00013 19.9 5.5 112 40-155 82-194 (217) 17 >3i09_A Periplasmic branched-c 78.7 3.2 9.4E-05 20.8 4.2 35 102-136 1-35 (191) 18 >3gv0_A Transcriptional regula 75.7 5.4 0.00016 19.4 9.1 99 53-151 9-114 (132) 19 >1tjy_A Sugar transport protei 74.8 5.6 0.00017 19.3 8.5 98 53-150 13-114 (151) 20 >1rcu_A Conserved hypothetical 73.6 6.1 0.00018 19.1 5.9 76 37-113 57-141 (195) 21 >3egc_A Putative ribose operon 72.5 6.4 0.00019 18.9 9.5 100 52-151 8-114 (132) 22 >3hcw_A Maltose operon transcr 72.0 6.6 0.0002 18.8 8.4 100 52-151 8-114 (132) 23 >3ff1_A Glucose-6-phosphate is 70.7 7.1 0.00021 18.7 9.2 111 35-151 25-150 (173) 24 >1moq_A Glucosamine 6-phosphat 70.6 7.1 0.00021 18.7 4.7 91 35-135 50-143 (210) 25 >1moq_A Glucosamine 6-phosphat 69.7 7.4 0.00022 18.5 5.7 89 35-132 12-103 (158) 26 >2bpl_A Glucosamine--fructose- 69.4 7.5 0.00022 18.5 5.3 91 33-132 11-104 (159) 27 >1bd3_D Uprtase, uracil phosph 68.7 7.2 0.00021 18.6 4.0 112 42-155 109-221 (243) 28 >1ou0_A Precorrin-8X methylmut 68.5 7.9 0.00023 18.4 5.5 68 36-104 127-194 (207) 29 >3g85_A Transcriptional regula 68.1 8 0.00024 18.3 9.6 99 53-151 9-114 (134) 30 >3khd_A Pyruvate kinase; malar 67.3 8.3 0.00025 18.2 8.4 87 34-131 18-107 (122) 31 >3kjx_A Transcriptional regula 66.4 8.7 0.00026 18.1 11.5 99 52-150 8-114 (132) 32 >2o20_A Catabolite control pro 66.1 8.8 0.00026 18.1 10.4 97 53-151 9-112 (130) 33 >1vim_A Hypothetical protein A 65.5 9 0.00027 18.0 7.1 95 50-155 37-145 (200) 34 >3h5o_A Transcriptional regula 64.7 9.3 0.00028 17.9 10.2 98 53-150 9-113 (132) 35 >3hqn_D Pyruvate kinase, PK; T 63.4 9.9 0.00029 17.8 7.4 87 35-129 33-125 (140) 36 >1vr9_A CBS domain protein/ACT 62.9 10 0.0003 17.7 4.5 84 49-132 11-98 (134) 37 >2pl5_A Homoserine O-acetyltra 62.9 10 0.0003 17.7 5.7 91 56-153 137-235 (260) 38 >3k9c_A Transcriptional regula 62.1 10 0.00031 17.6 11.7 98 53-151 9-112 (130) 39 >3gg8_A Pyruvate kinase; malar 61.4 11 0.00032 17.6 8.2 88 34-132 34-124 (138) 40 >1o94_A Tmadh, trimethylamine 61.3 11 0.00032 17.5 4.5 97 34-136 13-124 (195) 41 >1b0z_A Protein (phosphoglucos 61.1 11 0.00032 17.5 7.4 109 35-152 25-152 (174) 42 >2vxo_A GMP synthase [glutamin 60.8 11 0.00033 17.5 4.9 54 38-91 25-81 (229) 43 >3ctp_A Periplasmic binding pr 58.8 12 0.00035 17.3 5.4 96 53-150 9-111 (130) 44 >3i45_A Twin-arginine transloc 58.2 12 0.00036 17.2 4.9 90 52-142 8-99 (200) 45 >2fqx_A Membrane lipoprotein T 57.9 12 0.00037 17.2 11.5 98 53-151 12-114 (137) 46 >3k4h_A Putative transcription 57.2 13 0.00038 17.1 10.2 97 53-150 9-113 (132) 47 >1d5t_A Guanine nucleotide dis 55.6 14 0.0004 16.9 5.9 52 39-90 8-59 (135) 48 >2r9v_A ATP synthase subunit a 55.2 14 0.00041 16.9 7.9 96 47-142 82-184 (276) 49 >3g1w_A Sugar ABC transporter; 54.7 14 0.00041 16.9 9.3 99 53-151 9-113 (134) 50 >3bq9_A Predicted rossmann fol 54.6 14 0.00041 16.9 6.9 93 37-129 58-203 (375) 51 >1v9s_A Uracil phosphoribosylt 54.5 14 0.00042 16.8 3.8 112 40-155 74-186 (208) 52 >3gyb_A Transcriptional regula 54.1 14 0.00042 16.8 10.7 98 53-151 9-111 (129) 53 >2d13_A Hypothetical protein P 53.1 15 0.00044 16.7 8.2 108 36-148 4-120 (124) 54 >2fn9_A Ribose ABC transporter 52.9 15 0.00044 16.7 6.0 91 59-150 23-117 (140) 55 >2h0a_A TTHA0807, transcriptio 52.3 15 0.00045 16.6 8.3 98 53-150 8-117 (134) 56 >2fvy_A D-galactose-binding pe 52.3 15 0.00045 16.6 5.2 94 56-150 23-123 (145) 57 >2rgy_A Transcriptional regula 51.8 16 0.00046 16.6 11.4 99 53-151 10-115 (133) 58 >1k0i_A P-hydroxybenzoate hydr 50.7 16 0.00048 16.5 4.9 52 39-90 4-56 (103) 59 >1jye_A Lactose operon repress 50.2 16 0.00049 16.4 9.6 97 52-150 8-111 (130) 60 >2poc_A D-fructose-6-, isomera 50.1 17 0.00049 16.4 6.5 89 33-130 12-103 (161) 61 >3cvj_A Putative phosphoheptos 50.1 17 0.00049 16.4 4.7 43 90-134 108-150 (243) 62 >3clk_A Transcription regulato 48.7 17 0.00052 16.3 10.8 97 54-151 10-113 (131) 63 >3hs3_A Ribose operon represso 48.1 18 0.00053 16.2 5.3 95 51-150 6-107 (126) 64 >2ioy_A Periplasmic sugar-bind 47.7 18 0.00053 16.2 10.0 98 53-151 9-112 (133) 65 >2yva_A DNAA initiator-associa 47.3 18 0.00054 16.1 6.7 97 35-134 39-151 (196) 66 >1jeo_A MJ1247, hypothetical p 46.2 19 0.00056 16.0 6.9 97 49-158 29-140 (180) 67 >2afr_A Cobalamin biosynthesis 46.1 19 0.00057 16.0 5.2 68 37-105 133-206 (231) 68 >2cun_A Phosphoglycerate kinas 46.0 19 0.00057 16.0 4.1 32 39-70 4-37 (202) 69 >3eua_A Putative fructose-amin 45.8 19 0.00057 16.0 5.8 59 90-157 74-132 (155) 70 >2gag_B Heterotetrameric sarco 45.8 19 0.00057 16.0 6.3 52 39-90 23-78 (199) 71 >3ksm_A ABC-type sugar transpo 45.7 19 0.00057 16.0 7.5 98 52-151 11-115 (136) 72 >3fxa_A SIS domain protein; YP 45.1 20 0.00058 15.9 6.4 60 90-158 92-151 (201) 73 >3brq_A HTH-type transcription 45.0 20 0.00059 15.9 10.6 98 53-151 10-115 (133) 74 >3dbi_A Sugar-binding transcri 45.0 20 0.00059 15.9 11.1 99 53-151 10-115 (133) 75 >3ef6_A Toluene 1,2-dioxygenas 44.4 19 0.00056 16.1 2.8 30 39-68 4-33 (177) 76 >2hsg_A Glucose-resistance amy 44.1 21 0.00061 15.8 7.8 98 53-150 10-115 (134) 77 >1f2v_A COBH, precorrin-8X met 43.6 21 0.00062 15.8 5.9 68 36-104 137-206 (219) 78 >2e28_A Pyruvate kinase, PK; a 43.5 21 0.00062 15.8 8.3 83 34-128 32-118 (136) 79 >3fg2_P Putative rubredoxin re 43.0 21 0.00063 15.7 4.9 31 39-69 3-33 (177) 80 >3a1c_A Probable copper-export 42.7 19 0.00057 16.0 2.6 28 101-129 40-67 (165) 81 >1v9c_A Precorrin-8X methyl mu 41.8 22 0.00066 15.6 4.6 53 38-91 128-180 (218) 82 >2af4_C Phosphate acetyltransf 41.4 23 0.00067 15.6 7.7 56 39-101 18-74 (174) 83 >1m3s_A Hypothetical protein Y 40.9 23 0.00068 15.5 7.2 83 48-134 25-121 (186) 84 >3lm7_A Putative 4-hydroxy-2-o 40.7 23 0.00069 15.5 5.0 69 49-122 146-216 (249) 85 >1qpz_A PURA, protein (purine 40.4 23 0.00069 15.5 11.0 98 53-151 9-114 (132) 86 >3gr4_A Pyruvate kinase isozym 39.9 24 0.00071 15.4 6.3 85 35-129 19-111 (127) 87 >1tk9_A Phosphoheptose isomera 39.8 24 0.00071 15.4 7.5 111 35-155 40-166 (188) 88 >2fep_A Catabolite control pro 39.8 24 0.00071 15.4 9.6 100 52-151 8-115 (133) 89 >1uta_A FTSN, MSGA, cell divis 38.7 25 0.00074 15.3 3.4 56 71-128 17-80 (81) 90 >1a3w_A Pyruvate kinase; allos 38.6 25 0.00074 15.3 6.8 85 35-127 33-124 (140) 91 >1lvl_A Dihydrolipoamide dehyd 38.4 25 0.00074 15.3 6.0 56 34-89 16-75 (112) 92 >2iz6_A Molybdenum cofactor ca 38.0 26 0.00076 15.3 4.2 12 100-111 117-128 (176) 93 >1fcd_A Flavocytochrome C sulf 37.9 26 0.00076 15.2 4.3 31 39-69 4-34 (150) 94 >3ics_A Coenzyme A-disulfide r 37.8 26 0.00076 15.2 5.0 36 35-70 34-69 (221) 95 >3fiu_A NH(3)-dependent NAD(+) 37.7 26 0.00076 15.2 5.0 62 34-95 27-89 (249) 96 >3dme_A Conserved exported pro 37.1 26 0.00078 15.2 5.6 51 39-89 6-59 (161) 97 >3dty_A Oxidoreductase, GFO/ID 36.6 27 0.0008 15.1 6.6 68 94-186 112-179 (226) 98 >2aqj_A Tryptophan halogenase, 36.5 27 0.0008 15.1 5.5 55 36-90 4-61 (273) 99 >1yqz_A Coenzyme A disulfide r 36.5 27 0.0008 15.1 5.7 56 35-90 24-83 (115) 100 >2a67_A Isochorismatase family 36.4 27 0.0008 15.1 3.0 101 48-151 31-133 (167) 101 >3huu_A Transcription regulato 36.4 27 0.0008 15.1 6.5 95 53-150 9-110 (129) 102 >1u0t_A Inorganic polyphosphat 36.0 27 0.00081 15.1 3.7 37 33-70 72-108 (149) 103 >1ydw_A AX110P-like protein; s 36.0 28 0.00081 15.1 7.5 79 75-165 83-163 (191) 104 >2iks_A DNA-binding transcript 35.9 28 0.00082 15.1 8.7 96 53-150 9-111 (130) 105 >1tzb_A Glucose-6-phosphate is 35.9 28 0.00082 15.0 5.1 37 93-131 66-102 (144) 106 >3cs3_A Sugar-binding transcri 35.6 28 0.00083 15.0 6.3 94 53-149 9-110 (130) 107 >3jyn_A Quinone oxidoreductase 35.1 28 0.00084 15.0 4.7 106 34-155 2-107 (132) 108 >1jq5_A Glycerol dehydrogenase 35.0 28 0.00084 15.0 7.6 109 40-154 12-120 (163) 109 >2pn1_A Carbamoylphosphate syn 34.5 29 0.00086 14.9 4.1 43 104-149 58-103 (104) 110 >2c31_A Oxalyl-COA decarboxyla 33.9 24 0.0007 15.4 1.9 48 44-91 4-51 (179) 111 >1dbq_A Purine repressor; tran 33.9 30 0.00088 14.8 11.1 98 53-151 9-114 (132) 112 >3fg2_P Putative rubredoxin re 33.0 31 0.00091 14.8 5.7 55 35-89 24-83 (121) 113 >2qe7_A ATP synthase subunit a 32.9 31 0.00091 14.7 8.4 97 46-142 81-184 (275) 114 >1jx6_A LUXP protein; protein- 32.8 31 0.00092 14.7 8.8 97 53-150 8-110 (133) 115 >3e7d_A COBH, precorrin-8X met 32.7 31 0.00092 14.7 5.9 69 36-105 130-200 (212) 116 >2pff_B Fatty acid synthase su 32.7 31 0.00092 14.7 4.0 30 103-132 49-78 (95) 117 >1dxl_A Dihydrolipoamide dehyd 32.7 31 0.00092 14.7 6.2 57 34-90 17-77 (118) 118 >2b9w_A Putative aminooxidase; 31.8 32 0.00095 14.6 4.2 33 35-68 5-37 (191) 119 >2v3a_A Rubredoxin reductase; 31.6 32 0.00096 14.6 3.6 31 39-69 6-37 (172) 120 >3cf4_G Acetyl-COA decarbonyla 31.6 32 0.00096 14.6 2.7 130 45-176 19-166 (170) 121 >2q28_A Oxalyl-COA decarboxyla 31.3 24 0.0007 15.5 1.6 47 45-91 5-51 (177) 122 >3jvd_A Transcriptional regula 30.9 33 0.00098 14.5 8.9 95 53-151 9-110 (128) 123 >2qae_A Lipoamide, dihydrolipo 30.9 33 0.00099 14.5 4.0 57 34-90 17-78 (118) 124 >3c1a_A Putative oxidoreductas 30.8 33 0.00099 14.5 7.9 56 82-142 87-146 (170) 125 >2eih_A Alcohol dehydrogenase; 30.5 34 0.001 14.5 5.3 38 32-69 14-51 (145) 126 >3cty_A Thioredoxin reductase; 30.3 34 0.001 14.5 4.2 51 37-89 21-71 (114) 127 >1nhp_A NADH peroxidase; oxido 30.2 34 0.001 14.5 4.3 30 40-69 3-32 (160) 128 >2rgh_A Alpha-glycerophosphate 30.1 34 0.001 14.5 6.1 52 39-90 34-87 (200) 129 >1wek_A Hypothetical protein T 30.1 34 0.001 14.5 4.8 44 94-137 119-164 (201) 130 >1pea_A Amidase operon; gene r 29.9 35 0.001 14.4 5.2 90 52-142 4-95 (179) 131 >1i5e_A Uracil phosphoribosylt 29.8 35 0.001 14.4 2.8 68 87-155 59-126 (148) 132 >1xa0_A Putative NADPH depende 29.7 35 0.001 14.4 6.1 41 31-71 23-63 (172) 133 >3lad_A Dihydrolipoamide dehyd 29.6 35 0.001 14.4 3.9 33 35-68 2-34 (122) 134 >2oln_A NIKD protein; flavopro 29.5 35 0.001 14.4 6.1 53 37-90 5-58 (168) 135 >2pfu_A Biopolymer transport E 29.1 36 0.0011 14.4 2.8 55 74-128 39-94 (99) 136 >1wd5_A Hypothetical protein T 28.7 5.4 0.00016 19.4 -2.1 65 85-153 114-178 (208) 137 >2qcu_A Aerobic glycerol-3-pho 28.7 36 0.0011 14.3 6.1 53 37-90 4-58 (171) 138 >1xng_A NH(3)-dependent NAD(+) 28.4 37 0.0011 14.3 4.1 61 35-95 24-86 (132) 139 >2atm_A Hyaluronoglucosaminida 28.2 37 0.0011 14.3 5.8 71 47-117 85-165 (178) 140 >3fj1_A Putative phosphosugar 28.2 37 0.0011 14.3 6.4 92 33-134 39-133 (193) 141 >3fbs_A Oxidoreductase; struct 27.1 33 0.00097 14.6 1.7 50 36-89 20-69 (101) 142 >2gqw_A Ferredoxin reductase; 27.1 39 0.0011 14.1 6.1 57 34-90 23-84 (116) 143 >3kg2_A Glutamate receptor 2; 27.0 39 0.0012 14.1 6.0 89 54-142 6-96 (189) 144 >3g68_A Putative phosphosugar 26.7 39 0.0012 14.1 4.4 94 31-134 28-124 (188) 145 >1fx0_A ATP synthase alpha cha 26.7 39 0.0012 14.1 8.1 96 47-142 82-184 (277) 146 >1e0t_A Pyruvate kinase, PK; p 26.5 40 0.0012 14.1 7.9 81 35-126 23-107 (124) 147 >1a9x_A Carbamoyl phosphate sy 26.4 40 0.0012 14.1 2.4 23 38-60 78-100 (127) 148 >1yb5_A Quinone oxidoreductase 26.2 40 0.0012 14.0 4.8 39 31-69 12-50 (165) 149 >1yt5_A Inorganic polyphosphat 26.1 33 0.00097 14.6 1.6 25 32-57 37-61 (78) 150 >1xhc_A NADH oxidase /nitrite 26.1 40 0.0012 14.0 4.3 50 40-89 3-55 (87) 151 >2c0c_A Zinc binding alcohol d 25.9 41 0.0012 14.0 3.0 38 32-69 19-56 (179) 152 >1fl2_A Alkyl hydroperoxide re 25.8 41 0.0012 14.0 3.3 30 40-69 4-33 (170) 153 >2vdc_G Glutamate synthase [NA 25.5 41 0.0012 14.0 4.4 36 34-69 3-38 (157) 154 >1gud_A ALBP, D-allose-binding 25.2 42 0.0012 13.9 9.7 98 52-150 11-113 (135) 155 >2pgn_A Cyclohexane-1,2-dione 25.1 42 0.0012 13.9 2.4 48 44-91 7-54 (190) 156 >1z0s_A Probable inorganic pol 24.8 29 0.00086 14.9 1.1 34 32-67 64-97 (140) 157 >3beg_B Splicing factor, argin 24.7 43 0.0013 13.9 2.1 59 59-117 13-71 (115) 158 >2pan_A Glyoxylate carboligase 24.7 43 0.0013 13.9 2.7 103 44-149 6-119 (220) 159 >3e9m_A Oxidoreductase, GFO/ID 24.7 43 0.0013 13.9 7.7 41 76-120 80-120 (181) 160 >2a4a_A Deoxyribose-phosphate 24.5 43 0.0013 13.8 6.0 101 47-149 71-190 (281) 161 >3gqv_A Enoyl reductase; mediu 24.4 44 0.0013 13.8 3.1 21 40-60 173-193 (215) 162 >8abp_A L-arabinose-binding pr 24.2 44 0.0013 13.8 9.1 98 53-150 13-122 (146) 163 >2a8x_A Dihydrolipoyl dehydrog 24.0 44 0.0013 13.8 3.8 34 36-70 3-36 (194) 164 >3dk9_A Grase, GR, glutathione 24.0 44 0.0013 13.8 5.2 51 39-89 4-58 (62) 165 >2uva_G Fatty acid synthase be 23.8 45 0.0013 13.8 2.7 30 104-133 50-79 (95) 166 >2a87_A TRXR, TR, thioredoxin 23.8 45 0.0013 13.8 3.5 35 33-68 11-45 (190) 167 >2oho_A Glutamate racemase; is 23.7 45 0.0013 13.8 3.9 68 107-178 63-132 (142) 168 >1lvl_A Dihydrolipoamide dehyd 23.5 45 0.0013 13.7 4.2 35 34-69 3-37 (192) 169 >1ozh_A ALS, acetolactate synt 23.5 45 0.0013 13.7 4.5 91 45-137 6-107 (180) 170 >3k7m_X 6-hydroxy-L-nicotine o 23.0 46 0.0014 13.7 3.7 29 40-68 4-32 (219) 171 >1u9y_A RPPK;, ribose-phosphat 22.9 46 0.0014 13.7 5.8 100 40-142 15-115 (128) 172 >1q6z_A BFD, BFDC, benzoylform 22.9 47 0.0014 13.7 3.2 48 45-92 12-59 (168) 173 >3gms_A Putative NADPH:quinone 22.9 47 0.0014 13.6 5.5 41 31-71 13-53 (149) 174 >3l49_A ABC sugar (ribose) tra 22.7 47 0.0014 13.6 5.8 99 53-151 9-118 (141) 175 >1zun_A Sulfate adenylyltransf 22.1 48 0.0014 13.6 7.0 72 50-122 32-107 (325) 176 >1v3u_A Leukotriene B4 12- hyd 22.0 48 0.0014 13.5 3.6 38 32-69 23-60 (182) 177 >1oj7_A Hypothetical oxidoredu 22.0 49 0.0014 13.5 3.2 110 41-155 7-136 (175) 178 >1f2t_B RAD50 ABC-ATPase; DNA 22.0 49 0.0014 13.5 3.0 37 94-130 85-124 (125) 179 >3fbs_A Oxidoreductase; struct 21.8 49 0.0014 13.5 3.8 30 40-69 5-34 (152) 180 >1ps9_A 2,4-dienoyl-COA reduct 21.8 49 0.0015 13.5 2.7 31 39-69 14-44 (159) 181 >3jy6_A Transcriptional regula 21.8 49 0.0015 13.5 8.5 95 55-150 11-110 (117) 182 >1gte_A Dihydropyrimidine dehy 21.7 49 0.0015 13.5 4.4 31 38-68 11-41 (186) 183 >2wvg_A PDC, pyruvate decarbox 21.7 49 0.0015 13.5 3.7 49 45-93 14-62 (177) 184 >1nri_A Hypothetical protein H 21.4 50 0.0015 13.5 6.6 55 92-155 142-196 (233) 185 >3l8k_A Dihydrolipoyl dehydrog 21.3 50 0.0015 13.5 6.9 56 35-90 12-69 (110) 186 >1hyu_A AHPF, alkyl hydroperox 21.3 50 0.0015 13.5 3.8 33 36-69 26-58 (189) 187 >1xdi_A RV3303C-LPDA; reductas 20.7 52 0.0015 13.4 4.3 31 37-68 3-33 (203) 188 >2i0z_A NAD(FAD)-utilizing deh 20.7 52 0.0015 13.4 3.8 36 33-69 23-58 (249) 189 >1ebd_A E3BD, dihydrolipoamide 20.7 52 0.0015 13.4 6.1 56 35-90 17-76 (115) 190 >2iht_A Carboxyethylarginine s 20.6 52 0.0015 13.4 3.6 110 39-154 9-136 (170) 191 >2q8n_A Glucose-6-phosphate is 20.6 52 0.0015 13.4 8.6 113 32-152 16-148 (170) 192 >2hqm_A GR, grase, glutathione 20.6 52 0.0015 13.4 5.4 53 37-89 2-58 (64) 193 >2wjw_A Glutamate receptor 2; 20.4 52 0.0016 13.3 8.0 89 54-142 7-97 (181) 194 >2nxw_A Phenyl-3-pyruvate deca 20.3 53 0.0016 13.3 2.5 80 45-126 9-99 (163) 195 >2i2c_A Probable inorganic pol 20.2 53 0.0016 13.3 2.9 34 33-67 32-66 (93) 196 >2vvm_A Monoamine oxidase N; F 20.1 53 0.0016 13.3 3.7 30 39-68 41-70 (495) 197 >2bpl_A Glucosamine--fructose- 20.0 53 0.0016 13.3 5.2 90 35-134 47-139 (206) 198 >3iwa_A FAD-dependent pyridine 20.0 53 0.0016 13.3 4.1 30 39-68 5-34 (209) No 1 >>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12} (A:32-182) Probab=99.95 E-value=2.2e-27 Score=187.12 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=109.5 Q ss_pred CCCCCCCEEEEECCCH-HHHHHHHHHHHHCCCCCEECCCCC---------------------CCCCHHHHHHHHHHHC-C Q ss_conf 6545687899946985-799999999996899824515876---------------------5467899999876515-8 Q gi|254780579|r 32 PDHPSVSAIVVLTGEP-IRIERAFELLENQIGEKIFISGVH---------------------HSVSKDILLQKIPIRQ-D 88 (207) Q Consensus 32 ~~~~~~DaIVVLgGg~-~Ri~~a~~L~~~g~~~~ii~SG~~---------------------~~~~~~~~~~~~~~~~-~ 88 (207) +.++++|+|||||||. .|.+.|++|+++|+++.++++|+. ...+|++.|++++.+. | T Consensus 1 d~~~~~d~ivVLG~~~~~r~~~a~~l~~~~~a~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sEA~~m~~~l~~~~G 80 (151) T 3ca8_A 1 EVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWH 80 (151) T ss_dssp TCCCCCSEEEEESCCCHHHHHHHHHHHHHHTCCEEEECCSSTTHHHHHHHHHTCTTGGGSCCTTSCHHHHHHHHHHHTTC T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 77889898998189841889999999983598889617987454104444312666666788998899999999999649 Q ss_pred CCHHHEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 86133220466666025699999999864--9981898511442199999999862998799964167 Q gi|254780579|r 89 LAECCIDIGYKALNTEGNAQEASAWAEKN--NFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIIS 154 (207) Q Consensus 89 i~~~~I~~e~~s~~T~ena~~~~~~l~~~--~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~ 154 (207) +|+++|++|++|+||.|||.+++++++++ ++++++||||+|||+||.++|++.++++..++++++. T Consensus 81 vp~~~I~~e~~s~~T~eNa~~~~~~l~~~~~~~~~iilVTs~~H~~Ra~~~~~~~~~~~~~~~~~~~~ 148 (151) T 3ca8_A 81 IPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSY 148 (151) T ss_dssp CCGGGEEEECCCCSHHHHHHHHHHHHHTCSSCCSCEEEECCTTTHHHHHHHHHHHHCCCTTSCSEEEC T ss_pred CCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEECC T ss_conf 98999552788778899999999999963999887999898888999999999975767777402126 No 2 >>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ... (A:103-289) Probab=93.22 E-value=0.44 Score=26.07 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=64.7 Q ss_pred CCCCCCCEEEEECCC-HH---H-HHHHHHHHHHCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH Q ss_conf 654568789994698-57---9-9999999996899824-5158765467899999876515886133220466666025 Q gi|254780579|r 32 PDHPSVSAIVVLTGE-PI---R-IERAFELLENQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG 105 (207) Q Consensus 32 ~~~~~~DaIVVLgGg-~~---R-i~~a~~L~~~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e 105 (207) ....+.|.||++|-| .. | +..|+.=+ ....+++ +++..++. -+...+......+.-+++-.+|-+|.| T Consensus 42 ~~~~~~~~vv~iGiGGS~LG~~~l~~al~~~-~~~~~~i~fldn~Dp~-----~~~~~l~~l~~~~Tl~iviSKSg~T~E 115 (187) T 2cxn_A 42 YTGKSITDIINIGIGGSDLGPLMVTEALKPY-SKGGPRVWFVSNIDGT-----HIAKTLASLSPETSLFIIASKTFTTQE 115 (187) T ss_dssp TTSCBCCEEEEECCGGGTHHHHHHHHHTGGG-GTTSCEEEEECCSSHH-----HHHHHHTTCCTTTEEEEEECSSSCCHH T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHH-----HHHHHHHCCCCCCEEEEEECCCCCCHH T ss_conf 6655443157761575313189999996344-0266169976897507-----789876404866548999468777066 Q ss_pred ---HHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf ---69999999986499------81898511442199999999862998799964 Q gi|254780579|r 106 ---NAQEASAWAEKNNF------HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207) Q Consensus 106 ---na~~~~~~l~~~~~------~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207) |+...++|+++.+. ++++.||++--..+.. ...+.++.+.| T Consensus 116 T~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~-----~~~~~~~f~~~ 165 (187) T 2cxn_A 116 TITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVKEF-----GIDPQNMFEFW 165 (187) T ss_dssp HHHHHHHHHHHHHHHHCCGGGGGGTEEEEESCHHHHHHH-----TCCGGGEEECC T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHH-----CCCCCEEEEEE T ss_conf 889999999999984466354430001135618999983-----15652388752 No 3 >>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis} (A:93-282) Probab=92.43 E-value=0.74 Score=24.68 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=64.2 Q ss_pred CCCCCCCEEEEECCC-HHHHH-HHHHHHH--HCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH- Q ss_conf 654568789994698-57999-9999999--6899824-5158765467899999876515886133220466666025- Q gi|254780579|r 32 PDHPSVSAIVVLTGE-PIRIE-RAFELLE--NQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG- 105 (207) Q Consensus 32 ~~~~~~DaIVVLgGg-~~Ri~-~a~~L~~--~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e- 105 (207) ....+.|.||++|-| ..=-. ...+-++ ....+++ +++..++ ..+...+.+....+..+++-.+|-+|.| T Consensus 46 ~~~~~~~~vv~iGiGGS~LG~~~l~~al~~~~~~~~~i~f~~N~Dp-----~~~~~~l~~l~~~~Tl~iviSKSg~T~ET 120 (190) T 2wu8_A 46 ATGKRISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNVDP-----ADLIATLADLDPATTLFIVASKTFSTLET 120 (190) T ss_dssp SSSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSH-----HHHHHHHTTCCGGGEEEEEECSSSCCHHH T ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCH-----HHHHHHHHCCCCCCEEEEEECCCCCCHHH T ss_conf 6534312278872365654299999996100235401343799987-----99999874147544279994477773467 Q ss_pred --HHHHHHHHHHHCC----C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf --6999999998649----9-81898511442199999999862998799964 Q gi|254780579|r 106 --NAQEASAWAEKNN----F-HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207) Q Consensus 106 --na~~~~~~l~~~~----~-~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207) |++..++|+++++ + ++++.||++-...+... ..+.++.+.| T Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~~vaiT~~~~~~~~~~-----~~~~~if~~~ 168 (190) T 2wu8_A 121 LTNATAARRWLTDALGDAAVSRHFVAVSTNKRLVDDFG-----INTDNMFGFW 168 (190) T ss_dssp HHHHHHHHHHHHHHHCGGGGGGTEEEECSCHHHHHHHT-----CCGGGEECCC T ss_pred HHHHHHHHHHHHHHCCCHHHHHHEECCCCCHHHHHHHC-----CCCCEEEECC T ss_conf 89999999999873465776645001145568898630-----3401175012 No 4 >>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: PG4; 1.50A {Vibrio cholerae} (A:126-311) Probab=92.38 E-value=0.69 Score=24.87 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=65.1 Q ss_pred CCCCCCCCEEEEECCC-HHHHHH-HHH-HHHHCCCCCEEC-CCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH- Q ss_conf 7654568789994698-579999-999-999689982451-58765467899999876515886133220466666025- Q gi|254780579|r 31 IPDHPSVSAIVVLTGE-PIRIER-AFE-LLENQIGEKIFI-SGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG- 105 (207) Q Consensus 31 ~~~~~~~DaIVVLgGg-~~Ri~~-a~~-L~~~g~~~~ii~-SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e- 105 (207) .....+.|.||++|-| ..=-.. ..+ |......+++.+ +..++ +.+...+......+..+++-.+|-+|.| T Consensus 41 ~~~~~~~~~vv~iGiGGS~LG~~a~~~al~~~~~~~~i~f~dn~Dp-----~~~~~~l~~l~~~~tlviviSKSG~T~ET 115 (186) T 3hjb_A 41 GFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDG-----THMAETLKNVDPETTLFLVASKTFTTQET 115 (186) T ss_dssp CTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSCEEEEECCSSH-----HHHHHHHTTCCGGGEEEEEECSSSCCHHH T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCH-----HHHHHHHHCCCCCCEEEEEECCCCCCCCH T ss_conf 5668856638997172768999999998740034750540699998-----99999984489652799997388886334 Q ss_pred --HHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf --69999999986499------81898511442199999999862998799964 Q gi|254780579|r 106 --NAQEASAWAEKNNF------HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207) Q Consensus 106 --na~~~~~~l~~~~~------~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207) |++..++|+++++. ++++.||++--..+.. ...+..+.+.| T Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~vaiT~~~~~~~~~-----~~~~~~~f~~~ 164 (186) T 3hjb_A 116 MTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEF-----GIDTDNMFEFW 164 (186) T ss_dssp HHHHHHHHHHHHHHHCSGGGGGGTEEEESSCHHHHHHH-----TCCGGGEECCC T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHH-----CCCCCCCCCCC T ss_conf 78999999999973487776666600034657889871-----52533541367 No 5 >>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A (A:168-342) Probab=90.29 E-value=0.7 Score=24.80 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=65.8 Q ss_pred HHHHHHCCC--CCCCCCCCCEEEEECCC-HH---H-HHHHHHHHHHCCCCC-EECCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 999972134--67654568789994698-57---9-999999999689982-4515876546789999987651588613 Q gi|254780579|r 21 SFIRYVKQM--HIPDHPSVSAIVVLTGE-PI---R-IERAFELLENQIGEK-IFISGVHHSVSKDILLQKIPIRQDLAEC 92 (207) Q Consensus 21 ~f~~~~~~~--~~~~~~~~DaIVVLgGg-~~---R-i~~a~~L~~~g~~~~-ii~SG~~~~~~~~~~~~~~~~~~~i~~~ 92 (207) -|...+... .....++.|.+|++|-| .+ | +.+|+.=+ ....++ .+++..++. -+...+......+. T Consensus 12 ~~a~~ir~g~~~~~~g~~~~~vv~iGIGGS~LGp~~l~~al~~~-~~~~~~i~f~~n~Dp~-----~~~~~l~~l~~~~T 85 (175) T 2o2c_A 12 SFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPF-SQRDLSLHFVSNVDGT-----HIAEVLKSIDIEAT 85 (175) T ss_dssp HHHHHHHHTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGG-SCTTSEEEEECCSSHH-----HHHHHHHHCCGGGE T ss_pred HHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-CCCCCEEEECCCCCHH-----HHHHHHHHHCCCCC T ss_conf 99999855871376644443057724773348899999987411-4577206864786467-----89999864144320 Q ss_pred HEECCCCCCCHHH---HHHHHHHHHHHCC----------C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 3220466666025---6999999998649----------9-81898511442199999999862998799964 Q gi|254780579|r 93 CIDIGYKALNTEG---NAQEASAWAEKNN----------F-HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207) Q Consensus 93 ~I~~e~~s~~T~e---na~~~~~~l~~~~----------~-~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207) .+++-.+|-+|.| |+...++|+++.+ + ++++.||++---.+. .......+.+.| T Consensus 86 l~iviSKSg~T~ET~~n~~~~~~~l~~~~g~~~~~~~~~~~~~~vavT~~~~~~~~-----~~~~~~~~f~~~ 153 (175) T 2o2c_A 86 LFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKE-----FGIDEENMFQFW 153 (175) T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHEEEEESCHHHHHH-----HTCCGGGEEECC T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCHHHHHH-----HHHCCCCEEEEE T ss_conf 36751123565324789999999999998750565122123226763275389999-----730037577520 No 6 >>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} (A:167-341) Probab=89.35 E-value=0.56 Score=25.42 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=55.2 Q ss_pred CCCCCCCEEEEECCC-HHH-HHHHHHHH-H-HCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH- Q ss_conf 654568789994698-579-99999999-9-6899824-5158765467899999876515886133220466666025- Q gi|254780579|r 32 PDHPSVSAIVVLTGE-PIR-IERAFELL-E-NQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG- 105 (207) Q Consensus 32 ~~~~~~DaIVVLgGg-~~R-i~~a~~L~-~-~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e- 105 (207) ...++.|.+|++|-| ..= .....+-+ . ....+++ +++..++. .+...+......+..+++-.+|-+|.| T Consensus 25 ~~~~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~i~fldn~Dp~-----~~~~~l~~l~~~~Tl~iviSKSg~T~ET 99 (175) T 1t10_A 25 QTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGT-----HMAEVLKQVNLEETIFIIASKTFTTQET 99 (175) T ss_dssp TTSCBCCEEEEECCGGGTHHHHHHHHHTGGGSCSSSEEEEECCSSTH-----HHHHHHTTSCGGGEEEEEECSSSCCHHH T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHH-----HHHHHHHCCCCCCEEEEECCCCCCCCCH T ss_conf 22112110466347734189999999974020045230006886389-----9999863167742035753666766422 Q ss_pred --HHHHHHHHHHHCCC-----------CEEEEECCHHHHH Q ss_conf --69999999986499-----------8189851144219 Q gi|254780579|r 106 --NAQEASAWAEKNNF-----------HHVLIVTHDYHMP 132 (207) Q Consensus 106 --na~~~~~~l~~~~~-----------~~iiLVTs~yHm~ 132 (207) |+...++|+.+.+. ++++.||++--.. T Consensus 100 l~n~~~~~~~l~~~~~~~~~~~~~~~~~~~vavT~~~~~~ 139 (175) T 1t10_A 100 LTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTEKV 139 (175) T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHEEEECSCHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHH T ss_conf 6679999999999866515650566766533202635789 No 7 >>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} (A:) Probab=86.34 E-value=1.9 Score=22.18 Aligned_cols=16 Identities=25% Similarity=0.406 Sum_probs=7.2 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 6660256999999998 Q gi|254780579|r 100 ALNTEGNAQEASAWAE 115 (207) Q Consensus 100 s~~T~ena~~~~~~l~ 115 (207) ..-|.+|+.++..+.+ T Consensus 107 G~GTleEl~e~~~~~~ 122 (191) T 1t35_A 107 GFGTYEELFEVLCWAQ 122 (191) T ss_dssp CHHHHHHHHHHHHTTS T ss_pred CCCHHHHHHHHHHHHH T ss_conf 6204999999999999 No 8 >>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:217-375) Probab=86.28 E-value=2.2 Score=21.72 Aligned_cols=91 Identities=8% Similarity=-0.142 Sum_probs=51.6 Q ss_pred CCCCEEEEECCCHHH--HHH-HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH Q ss_conf 568789994698579--999-99999968998245158765467899999876515886133220466666025699999 Q gi|254780579|r 35 PSVSAIVVLTGEPIR--IER-AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS 111 (207) Q Consensus 35 ~~~DaIVVLgGg~~R--i~~-a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~ 111 (207) .++.-|.|+|.|... ..+ +.+|.+.+..+-...+... .+..... .--+++++++-..+..|.|...... T Consensus 13 ~~a~~i~i~G~G~s~~~A~~~~~kl~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~d~vi~is~~g~t~e~~~~~~ 84 (159) T 2zj3_A 13 YHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGE-------LKHGPLA-LVDKLMPVIMIIMRDHTYAKCQNAL 84 (159) T ss_dssp TTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGG-------GGGTGGG-GCSTTSCEEEEECSSTTHHHHHHHH T ss_pred HHCCCCEEECCCCCHHHHHHHHHHHHHHHCEEEEEECHHH-------HHCCCHH-HCCCCCCEEEEECCCHHHHHHHHHH T ss_conf 5354554756874378999999999886351347722576-------4075266-5079971899975731478899999 Q ss_pred HHHHHCCCCEEEEECCHHHHHHH Q ss_conf 99986499818985114421999 Q gi|254780579|r 112 AWAEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 112 ~~l~~~~~~~iiLVTs~yHm~RA 134 (207) +.++++|.+ +++||+..+.+=+ T Consensus 85 ~~~k~~g~~-vi~it~~~~s~l~ 106 (159) T 2zj3_A 85 QQVVARQGR-PVVICDKEDTETI 106 (159) T ss_dssp HHHHHTTCC-CEEEEETTCHHHH T ss_pred HHHHHCCCC-EEEEECCCCHHHH T ss_conf 999977996-8999878722333 No 9 >>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A (A:83-462) Probab=85.24 E-value=2.5 Score=21.41 Aligned_cols=94 Identities=9% Similarity=-0.021 Sum_probs=48.6 Q ss_pred CCCEEEEECCCH---HHHHHHHHHHHH-CCCCCEECCCCCCCCCHHHHHHHHHHH---------------CCCC------ Q ss_conf 687899946985---799999999996-899824515876546789999987651---------------5886------ Q gi|254780579|r 36 SVSAIVVLTGEP---IRIERAFELLEN-QIGEKIFISGVHHSVSKDILLQKIPIR---------------QDLA------ 90 (207) Q Consensus 36 ~~DaIVVLgGg~---~Ri~~a~~L~~~-g~~~~ii~SG~~~~~~~~~~~~~~~~~---------------~~i~------ 90 (207) ....+||.|+.. .-...|.+|-+. +..-.-+++|++++.-++......... ...+ T Consensus 64 ~~~~vv~~GSar~~~~~Y~~A~elG~~La~~g~~ivTGGGpG~Meaa~~GA~~a~g~s~~~~G~viGi~p~~l~~ee~pN 143 (380) T 3gh1_A 64 TPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAXEGPXKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPN 143 (380) T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCTTCCEEEEECTTTTTTSCCC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 88869982899899899999999999999879969989778999899988998279644777753576787774334688 Q ss_pred ----------------------HHHEECCCCCCCHHHHHHHHHHHHHHCCCC----EEEEECCHH Q ss_conf ----------------------133220466666025699999999864998----189851144 Q gi|254780579|r 91 ----------------------ECCIDIGYKALNTEGNAQEASAWAEKNNFH----HVLIVTHDY 129 (207) Q Consensus 91 ----------------------~~~I~~e~~s~~T~ena~~~~~~l~~~~~~----~iiLVTs~y 129 (207) .+.+++-+-.--|.||+.++..|++....+ -++|+-..+ T Consensus 144 ~~v~~li~~~~~~~Rk~~fv~~sdaiIvlPGG~GTLdElfe~ltl~q~g~~~k~~~PiVL~G~~~ 208 (380) T 3gh1_A 144 PIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYILGIXXHPENADQPXPIVLTGPKQ 208 (380) T ss_dssp TTCSEEEECSSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGG T ss_pred CCCCEEEECCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC T ss_conf 76550487386899999999867889985897650999999999985555788986899967865 No 10 >>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} (A:) Probab=81.81 E-value=3.5 Score=20.55 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=19.0 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCHH Q ss_conf 204666660256999999998649981--89851144 Q gi|254780579|r 95 DIGYKALNTEGNAQEASAWAEKNNFHH--VLIVTHDY 129 (207) Q Consensus 95 ~~e~~s~~T~ena~~~~~~l~~~~~~~--iiLVTs~y 129 (207) +.-.-+--|.+|+.++..+.+-...++ +++..+.| T Consensus 110 I~lpGG~GTl~El~~~lt~~q~g~~~~~~ivl~~~g~ 146 (216) T 1ydh_A 110 IALPGGYGTXEELLEXITWSQLGIHKKTVGLLNVDGY 146 (216) T ss_dssp EECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGT T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC T ss_conf 9927850589999999999984055787289967874 No 11 >>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182) Probab=81.52 E-value=3.6 Score=20.49 Aligned_cols=85 Identities=11% Similarity=-0.067 Sum_probs=50.4 Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH-------------------HHEECCCCCCCHHHHHH Q ss_conf 79999999999689982451587654678999998765158861-------------------33220466666025699 Q gi|254780579|r 48 IRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE-------------------CCIDIGYKALNTEGNAQ 108 (207) Q Consensus 48 ~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~-------------------~~I~~e~~s~~T~ena~ 108 (207) +.++.++++..+..+++|++-|.+....-++.++..+...|... +.++.-..+..| .+.. T Consensus 3 ~~i~~~v~~l~~~~a~~I~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~sg~t-~~~~ 81 (149) T 3knz_A 3 EDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFXQRWCALPVDVCWPFXLDDETLARSGKALVVGISQGGGS-LSTL 81 (149) T ss_dssp HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEEECGGGCCHHHHHHSCSEEEEEEESSSCC-HHHH T ss_pred HHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCEEEEEEECCCCC-HHHH T ss_conf 999999999986799989999950799999999999999839987995577840777789998189999389388-8999 Q ss_pred HHHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 99999986499818985114421999 Q gi|254780579|r 109 EASAWAEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 109 ~~~~~l~~~~~~~iiLVTs~yHm~RA 134 (207) ...+.++++|. .++++|+.-..+=+ T Consensus 82 ~~~~~ak~~g~-~~i~iT~~~~s~l~ 106 (149) T 3knz_A 82 AAXERARNVGH-ITASXAGVAPATID 106 (149) T ss_dssp HHHHHHHHTTC-EEEEEESSSSCGGG T ss_pred HHHHHHHHHHH-HHCCCCCCCCCHHH T ss_conf 99987665202-20257887862766 No 12 >>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223) Probab=81.33 E-value=3.6 Score=20.44 Aligned_cols=94 Identities=13% Similarity=-0.015 Sum_probs=64.5 Q ss_pred HHHHHHHCCCCCEECCCCCCCC--C--HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 9999996899824515876546--7--89999987651588613322046666602569999999986499818985114 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSV--S--KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~--~--~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) +-.|.++|.....+++|..... . ..+..+..+.+.+++.... ...++.+............ .-..++++++ T Consensus 9 ~~~l~~~G~r~i~~i~~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~ai~~~~d 83 (125) T 1byk_A 9 MQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAA----LPGLAMKQGYENVAKVITP-ETTALLCATD 83 (125) T ss_dssp HHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEE----CCCSCHHHHHHHSGGGCCT-TCCEEEESSH T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHHCC-CCCEECCCCH T ss_conf 9999985114432357666765077777677999999739976201----3778789999999997135-6760011324 Q ss_pred HHHHHHHHHHHHHCC-CCEEEEEE Q ss_conf 421999999998629-98799964 Q gi|254780579|r 129 YHMPRTFLELQRINS-TVQFIPYP 151 (207) Q Consensus 129 yHm~RA~~~f~~~~p-~i~i~~~p 151 (207) .....++..++..+| ++.++.+- T Consensus 84 ~~A~~~~~~l~~~gp~di~iv~fd 107 (125) T 1byk_A 84 TLALGASKYLQEQRIDTLQLASVG 107 (125) T ss_dssp HHHHHHHHHHHHTTCCSCEEEEEC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 667568999976086522236759 No 13 >>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} (A:) Probab=81.18 E-value=3.7 Score=20.41 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=19.2 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEE-CCHH Q ss_conf 22046666602569999999986499-818985-1144 Q gi|254780579|r 94 IDIGYKALNTEGNAQEASAWAEKNNF-HHVLIV-THDY 129 (207) Q Consensus 94 I~~e~~s~~T~ena~~~~~~l~~~~~-~~iiLV-Ts~y 129 (207) ++.-+-+.-|.+|+..+..+.+-... +.++++ .+.| T Consensus 113 ~I~lpGG~GTl~Ei~~~~~~~~~g~~~~p~iil~~~gf 150 (215) T 2a33_A 113 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 150 (215) T ss_dssp EEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGT T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC T ss_conf 66826632468999999999976887888389856884 No 14 >>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus HB8} (A:43-204) Probab=80.45 E-value=3.9 Score=20.26 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=62.3 Q ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHHCCCCCEEC-CCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH---HH Q ss_conf 545687899946-98579999999999689982451-58765467899999876515886133220466666025---69 Q gi|254780579|r 33 DHPSVSAIVVLT-GEPIRIERAFELLENQIGEKIFI-SGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG---NA 107 (207) Q Consensus 33 ~~~~~DaIVVLg-Gg~~Ri~~a~~L~~~g~~~~ii~-SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e---na 107 (207) ...+.|.||++| ||..=-..++..+-++..+.+.+ +..++. .....+......+.-++.-.+|-+|.| |+ T Consensus 20 ~~~~~~~iv~iGiGGS~lg~~~~~~~l~~~~~~~~~~~n~D~~-----~~~~~l~~l~~~~TlviviSkSG~T~ET~~~~ 94 (162) T 1zzg_A 20 ANPWVEDFVLIGIGGSALGPKALEAAFNESGVRFHYLDHVEPE-----PILRLLRTLDPRKTLVNAVSKSGSTAETLAGL 94 (162) T ss_dssp TCTTCSEEEEECCGGGTHHHHHHHHHHCCSCCEEEEECSCCHH-----HHHHHHHHSCGGGEEEEEEESSSCCHHHHHHH T ss_pred HHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCHH-----HHHHHHHHCCCHHEEEEEECCCCCCHHHHHHH T ss_conf 7358996999976477899999999983669738995489989-----99999983681341899846998870378999 Q ss_pred HHHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 99999998649----981898511442199999999862998799964 Q gi|254780579|r 108 QEASAWAEKNN----FHHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207) Q Consensus 108 ~~~~~~l~~~~----~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207) +..++++.+.+ -++++.||++--...-...=++ +..+.+.| T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~iT~~~s~~l~~~~~~~---~~~~~~~~ 139 (162) T 1zzg_A 95 AVFLKWLKAHLGEDWRRHLVVTTDPKEGPLRAFAERE---GLKAFAIP 139 (162) T ss_dssp HHHHHHHHHHHGGGGGGGEEEEECSSSSHHHHHHHHH---TCEEEECC T ss_pred HHHHHHHHHCCCCHHHHCEEEEECCCHHHHHHHHHHH---HHHHEECC T ss_conf 9999998753251666440322033067999987652---24421134 No 15 >>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:103-223) Probab=79.10 E-value=4.3 Score=20.00 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=70.9 Q ss_pred HHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 9999999689982451587654678---9999987651588613322046666602569999999986499818985114 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) .+-.|+++|+....+++|....... ..-+.....+.+.+...+.......+..+.......++...+....++++++ T Consensus 9 a~~~L~~~G~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d 88 (121) T 3d8u_A 9 CTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAXIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHE 88 (121) T ss_dssp HHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEESSH T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHH T ss_conf 99988751462364113576530122100013555542277664000123575222688999987652378607875027 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 42199999999862---9-9879996 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207) ....-++..++..+ | ++.|+.+ T Consensus 89 ~~a~~~l~~l~~~g~~vP~di~iig~ 114 (121) T 3d8u_A 89 EIAIGALFECHRRVLKVPTDIAIICL 114 (121) T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEES T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEC T ss_conf 77766666554213322332101321 No 16 >>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} (A:) Probab=78.81 E-value=4.4 Score=19.94 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=71.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 99946985799999999996899824515876546789999987651588613322046666602569999999986499 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF 119 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~ 119 (207) +..+.||..|...-.+.+. .++..+.+......+... ........+....+++-..--+|-+....+.+.++++|. T Consensus 82 v~~d~~g~~~~~~~~~~l~--~~~~~~~~~~r~~~~~~~--~~~~l~~dv~~k~viIvDdmi~TG~T~i~a~~~Lk~~Ga 157 (217) T 3dmp_A 82 VPVLRAGVGMSDGLLELIP--SARVGHIGVYRADDHRPV--EYLVRLPDLEDRIFILCDPMVATGYSAAHAIDVLKRRGV 157 (217) T ss_dssp EEEETTTHHHHHHHHHHCT--TSEECEEECSCCCSSSCC--CSEEECCCCTTCEEEEECSEESSSHHHHHHHHHHHTTTC T ss_pred EEECCCHHHHHHHHHHHCC--CCEEEEEEEEECCCCCCE--EEEECCCCHHHCEEEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 9861436759999998687--740789998607989815--766628973435799980433670889999999998699 Q ss_pred CE-EEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 81-8985114421999999998629987999641676 Q gi|254780579|r 120 HH-VLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 120 ~~-iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) ++ .+++|+..-...+.-.+.+.+++..++...++.. T Consensus 158 ~~v~i~~th~i~s~~a~~~i~~~~~~~~i~t~ti~~~ 194 (217) T 3dmp_A 158 PGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSH 194 (217) T ss_dssp CGGGEEEECSEECHHHHHHHHHHCTTCEEEESEECCE T ss_pred CCCEEEEEEEEECHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9517999999965899999998797978999854777 No 17 >>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375) Probab=78.74 E-value=3.2 Score=20.80 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=23.1 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH Q ss_conf 60256999999998649981898511442199999 Q gi|254780579|r 102 NTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFL 136 (207) Q Consensus 102 ~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~ 136 (207) ||.+.+..+.+++.++|++++.+|++++.--++.. T Consensus 1 nd~~qa~~~a~~l~~~g~k~Vaii~~D~ayG~~~~ 35 (191) T 3i09_A 1 DTXALAKGTGSAVVKQGGKTWFFLTADYAFGKALE 35 (191) T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH T ss_conf 64999999999987513778999516871878999 No 18 >>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242) Probab=75.70 E-value=5.4 Score=19.40 Aligned_cols=99 Identities=8% Similarity=-0.095 Sum_probs=66.6 Q ss_pred HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 99999968998245158765467---899999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|+++|+.+..+++|...... ..+-..+.+.+.++............++.+.......+++..+-...++++++. T Consensus 9 ~~~l~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~ 88 (132) T 3gv0_A 9 VERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLXQSSDRPDGIVSISGS 88 (132) T ss_dssp HHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEESCHH T ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 77763125340368717743322566678889999986311003330343211135778887654303577400113478 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 2199999999862---9-98799964 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~p 151 (207) .+.+++..+++.. | ++.++.+- T Consensus 89 ~a~~~~~~l~~~g~~ip~di~i~~fd 114 (132) T 3gv0_A 89 STIALVAGFEAAGVKIGEDVDIVSKQ 114 (132) T ss_dssp HHHHHHHHHHTTTCCTTTSCEEEEEE T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEC T ss_conf 88877888763330145422899967 No 19 >>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:108-243,A:302-316) Probab=74.85 E-value=5.6 Score=19.27 Aligned_cols=98 Identities=6% Similarity=0.019 Sum_probs=58.8 Q ss_pred HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 99999968998245158765467---899999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) .+++..+|.....+++|...... ..+-++..+.+.+.............+.........++++.+.--+.+++.++. T Consensus 13 l~~~~~~g~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 92 (151) T 1tjy_A 13 AAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDAN 92 (151) T ss_dssp HHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECSTT T ss_pred HHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCH T ss_conf 99860455542000024676420135666677776503553320123302146788899999987328985199978868 Q ss_pred HHHHHHHHHHHHCC-CCEEEEE Q ss_conf 21999999998629-9879996 Q gi|254780579|r 130 HMPRTFLELQRINS-TVQFIPY 150 (207) Q Consensus 130 Hm~RA~~~f~~~~p-~i~i~~~ 150 (207) ...-+...++..+| ++.++.+ T Consensus 93 ~a~g~~~al~~~g~~~i~ivgf 114 (151) T 1tjy_A 93 ALPAAAQAAENLKRNNLAIVGF 114 (151) T ss_dssp HHHHHHHHHHHTTCCSCEEEEB T ss_pred HHHHHHHHHHHCCCCCCEEEEE T ss_conf 9999999999769998579998 No 20 >>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} (A:) Probab=73.59 E-value=6.1 Score=19.08 Aligned_cols=76 Identities=14% Similarity=-0.013 Sum_probs=32.5 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC---------CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHH Q ss_conf 878999469857999999999968998245158765---------46789999987651588613322046666602569 Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH---------SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNA 107 (207) Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~---------~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena 107 (207) .+..||-||+.+=...+.+=..+.-...|-+...+. ......+...........+..|.++ -..-|.+++ T Consensus 57 ~g~~ivsGg~~Gim~aa~~ga~~~gg~~igi~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sda~Iv~~-gg~GTl~E~ 135 (195) T 1rcu_A 57 KGYLVFNGGRDGVXELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIG-GEIGTAIEI 135 (195) T ss_dssp TTCEEEECCSSHHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTTCSEEEEES-CCHHHHHHH T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEC-CCCCHHHHH T ss_conf 7999994872748899999888629906887326763577567313455446776678753266205504-344358999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780579|r 108 QEASAW 113 (207) Q Consensus 108 ~~~~~~ 113 (207) .++.++ T Consensus 136 ~~a~~~ 141 (195) T 1rcu_A 136 LGAYAL 141 (195) T ss_dssp HHHHHT T ss_pred HHHHHH T ss_conf 999991 No 21 >>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240) Probab=72.46 E-value=6.4 Score=18.91 Aligned_cols=100 Identities=9% Similarity=-0.015 Sum_probs=66.2 Q ss_pred HHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 9999999689982451587654678---9999987651588613322046666602569999999986499818985114 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) .+-.|+++|.....+++|.....+. ..-++..+.+.+++...........+..+-.....+++.+..-...++++++ T Consensus 8 a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d 87 (132) T 3egc_A 8 AVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSH 87 (132) T ss_dssp HHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSH T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCC T ss_conf 89999976995586612772122033555899999998399854301324775267789999999854788630220232 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 42199999999862---9-98799964 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207) .=...++..++... | ++.|+.+- T Consensus 88 ~~a~~~~~~l~~~g~~iP~di~vvg~d 114 (132) T 3egc_A 88 RITEGAMQALNVLGLRYGPDVEIVSFD 114 (132) T ss_dssp HHHHHHHHHHHHHTCCBTTTBEEEEES T ss_pred CCCCCCEEHHHCCCCCCCCCEEEEECC T ss_conf 002451312220598567540145317 No 22 >>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:115-246) Probab=71.96 E-value=6.6 Score=18.84 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=64.5 Q ss_pred HHHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 999999968998245158765467---89999987651588613322046666602569999999986499818985114 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) .+-.|+++|+....++++...... ..+-....+.+.|+............+-........+++........++++++ T Consensus 8 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d 87 (132) T 3hcw_A 8 LTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDA 87 (132) T ss_dssp HHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSH T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 88875201322332245554320145556889999987498511011455403566665555432035777642222220 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 42199999999862---9-98799964 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207) .....+...+++.. | ++.++.+- T Consensus 88 ~~a~~~~~~l~~~g~~iP~di~ii~fd 114 (132) T 3hcw_A 88 MLHLAILSVLYELNIEIPKDVMTATFN 114 (132) T ss_dssp HHHHHHHHHHHHTTCCTTTTEEEEEEC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 133333554420332232210022568 No 23 >>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A* (A:50-222) Probab=70.70 E-value=7.1 Score=18.67 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=60.4 Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHH------HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH-- Q ss_conf 5687899946-98579999999999------68998245158765467899999876515886133220466666025-- Q gi|254780579|r 35 PSVSAIVVLT-GEPIRIERAFELLE------NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG-- 105 (207) Q Consensus 35 ~~~DaIVVLg-Gg~~Ri~~a~~L~~------~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e-- 105 (207) ...|.||++| ||..=-..++.-.- +...++.+.-..+ .. .......+......+..+++-.+|-+|.| T Consensus 25 ~~~~~vv~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~i~~~~n--~D-p~~~~~~l~~l~~~~Tl~iviSKSG~T~ET~ 101 (173) T 3ff1_A 25 ENSDVLVVIGIGGSYLGARAAIEXLTSSFRNSNEYPEIVFVGNH--LS-STYTKELVDYLADKDFSVNVISKSGTTTEPA 101 (173) T ss_dssp HHCSEEEEECCGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSS--CC-HHHHHHHHHHGGGCCEEEEEECSSSCCHHHH T ss_pred HCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--CC-HHHHHHHHHHHCCCCCEEEEEECCCCCHHHH T ss_conf 27998999945175689999999999887611678827985798--74-4689999973176675599998998877699 Q ss_pred -HHHHHHHHHHHCCC-----CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf -69999999986499-----81898511442199999999862998799964 Q gi|254780579|r 106 -NAQEASAWAEKNNF-----HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207) Q Consensus 106 -na~~~~~~l~~~~~-----~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207) |++..++|+++.+. ++++.||++--.......=++ +..+...| T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~vaiT~~~s~~l~~~a~~~---~~~~f~~~ 150 (173) T 3ff1_A 102 VAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNE---GYETFIVP 150 (173) T ss_dssp HHHHHHHHHHHHHHCHHHHHHHEEEEECSSCSHHHHHHHHH---TCEEEECC T ss_pred HHHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHHHHHHHHC---CCCEECCC T ss_conf 99999999999704735554478997367556789874401---31155168 No 24 >>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:1-210) Probab=70.57 E-value=7.1 Score=18.65 Aligned_cols=91 Identities=5% Similarity=-0.181 Sum_probs=52.7 Q ss_pred CCCCEEEEECCCHHH-HHH--HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH Q ss_conf 568789994698579-999--99999968998245158765467899999876515886133220466666025699999 Q gi|254780579|r 35 PSVSAIVVLTGEPIR-IER--AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS 111 (207) Q Consensus 35 ~~~DaIVVLgGg~~R-i~~--a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~ 111 (207) .+++-|.+.|.|..- +.. +..|.+.|.....+.. ........... -++++++.-..|.+|.+ ...+. T Consensus 50 ~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~--------~~~~~~~~~~~-~~~d~vI~iS~sG~t~e-~~~~~ 119 (210) T 1moq_A 50 SKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEI--------ASEFRYRKSAV-RRNSLMITLSQSGETAD-TLAGL 119 (210) T ss_dssp HHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEEEE--------HHHHHTSCCCC-CTTEEEEEEESSSCCHH-HHHHH T ss_pred HCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEE--------CCHHHCCCCCC-CCCCEEEEECCCCCCHH-HHHHH T ss_conf 3088899996418999999999999985484329980--------60653247777-99978999778899679-99999 Q ss_pred HHHHHCCCCEEEEECCHHHHHHHH Q ss_conf 999864998189851144219999 Q gi|254780579|r 112 AWAEKNNFHHVLIVTHDYHMPRTF 135 (207) Q Consensus 112 ~~l~~~~~~~iiLVTs~yHm~RA~ 135 (207) +.++++|...++++|+..+.+-+. T Consensus 120 ~~a~~~g~~~ii~~t~~~~s~l~~ 143 (210) T 1moq_A 120 RLSKELGYLGSLAICNVPGSSLVR 143 (210) T ss_dssp HHHTTTTCSEEEEEESSTTCHHHH T ss_pred HHHHHCCCCCEEEEECCCCCHHHH T ss_conf 999976997189998999998899 No 25 >>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:211-368) Probab=69.75 E-value=7.4 Score=18.54 Aligned_cols=89 Identities=8% Similarity=-0.112 Sum_probs=46.7 Q ss_pred CCCCEEEEECCCHHH--HHH-HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH Q ss_conf 568789994698579--999-99999968998245158765467899999876515886133220466666025699999 Q gi|254780579|r 35 PSVSAIVVLTGEPIR--IER-AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS 111 (207) Q Consensus 35 ~~~DaIVVLgGg~~R--i~~-a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~ 111 (207) ..++.|.++|.|..- ..+ +.+|.+-+.-+....+... .... ....--+++.+++-..+..|.|...... T Consensus 12 ~~a~~i~i~G~G~s~~~A~~~~~kl~~~~g~~~~~~~~~~-------~~~~-~~~~~~~~d~vi~is~~g~t~e~~~~~~ 83 (158) T 1moq_A 12 SDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGE-------LKHG-PLALIDADMPVIVVAPNNELLEKLKSNI 83 (158) T ss_dssp TTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGG-------GGGT-GGGGCSTTSCEEEESCCHHHHHHHHHHH T ss_pred HCCCCCEEECCCCCHHHHHHHHHHHHHHHCCEEEECCHHH-------HCCC-CHHHHCCCCEEEEEECCCHHHHHHHHHH T ss_conf 4375533642666579999999999986440224343888-------4449-7988289973899705866889999999 Q ss_pred HHHHHCCCCEEEEECCHHHHH Q ss_conf 999864998189851144219 Q gi|254780579|r 112 AWAEKNNFHHVLIVTHDYHMP 132 (207) Q Consensus 112 ~~l~~~~~~~iiLVTs~yHm~ 132 (207) +.++++|.+ ++.+|+....+ T Consensus 84 ~~~k~~g~~-~i~it~~~~s~ 103 (158) T 1moq_A 84 EEVRARGGQ-LYVFADQDAGF 103 (158) T ss_dssp HHTGGGTCC-EEEEEEGGGCC T ss_pred HHHHHCCCE-EEEEECCCCCC T ss_conf 999964992-99996687222 No 26 >>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:450-608) Probab=69.44 E-value=7.5 Score=18.50 Aligned_cols=91 Identities=8% Similarity=-0.145 Sum_probs=52.0 Q ss_pred CCCCCCEEEEECCCHHH--HHH-HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH Q ss_conf 54568789994698579--999-999999689982451587654678999998765158861332204666660256999 Q gi|254780579|r 33 DHPSVSAIVVLTGEPIR--IER-AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQE 109 (207) Q Consensus 33 ~~~~~DaIVVLgGg~~R--i~~-a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~ 109 (207) .-..++-|.|+|-|... ..+ +..|.+.+..+....+... .+....... -+++++++-..+..|.|.... T Consensus 11 ~l~~a~~i~i~G~G~s~~~A~~~~~kl~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~d~vi~is~~g~~~e~~~~ 82 (159) T 2bpl_A 11 DFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGE-------LKHGPLALI-DADMPVIVVAPNNELLEKLKS 82 (159) T ss_dssp GGTTCCEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGG-------GGGTGGGGC-CTTCEEEEEECSSTTHHHHHH T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHH-------HHCCCHHHC-CCCCEEEEEECCCHHHHHHHH T ss_conf 874576515872687229999999999876172147643888-------304758660-799709999779736999999 Q ss_pred HHHHHHHCCCCEEEEECCHHHHH Q ss_conf 99999864998189851144219 Q gi|254780579|r 110 ASAWAEKNNFHHVLIVTHDYHMP 132 (207) Q Consensus 110 ~~~~l~~~~~~~iiLVTs~yHm~ 132 (207) ..+.++++|. +++++|+....+ T Consensus 83 ~~~~ak~~g~-~vi~it~~~~s~ 104 (159) T 2bpl_A 83 NIEEVRARGG-QLYVFADQDAGF 104 (159) T ss_dssp HHHHHHHTTC-EEEEEEETTSCC T ss_pred HHHHHHHCCC-EEEEEECCCCCC T ss_conf 9999996699-599997587332 No 27 >>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} (D:) Probab=68.71 E-value=7.2 Score=18.62 Aligned_cols=112 Identities=9% Similarity=-0.030 Sum_probs=70.4 Q ss_pred EECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 94698579999999999689982451587654678999998765158861332204666660256999999998649981 Q gi|254780579|r 42 VLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHH 121 (207) Q Consensus 42 VLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~ 121 (207) .+.||..|...-.+.+.. ++...+....+..+.............+....+++-..--+|-+....+.+.++++|.++ T Consensus 109 pd~gg~~~~~~~~~~l~~--~~~~~~~~~r~~~~~~~~~~~~~~~~dv~gr~vIIvDdii~TG~T~~~a~~~Lk~~Ga~~ 186 (243) T 1bd3_D 109 IVRAGESMESGLRAVCRG--VRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKE 186 (243) T ss_dssp EETTTHHHHHHHHHHSTT--CCEEEEEEEECSSSCCEEEEEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCCG T ss_pred EECCCCCCHHHHHHHCCC--CEEEEEEECCCCCCCCCEEEHHHCCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCC T ss_conf 523666311316663865--212246411256667844208458765345648985746605377999999999739974 Q ss_pred -EEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf -8985114421999999998629987999641676 Q gi|254780579|r 122 -VLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 122 -iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) .+.+|+..=.+.+...+.+.+++..++...++.. T Consensus 187 i~~~~th~i~s~~a~~~i~~~~~~~ii~t~ti~~~ 221 (243) T 1bd3_D 187 ERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDIC 221 (243) T ss_dssp GGEEEEEEEECHHHHHHHHHHCTTSEEEEEEECSE T ss_pred CEEEEEEEEECHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 21799999865899999998797978999986765 No 28 >>1ou0_A Precorrin-8X methylmutase related protein; structural genomics, PSI, protein structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} (A:) Probab=68.51 E-value=7.9 Score=18.38 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=42.5 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH Q ss_conf 687899946985799999999996899824515876546789999987651588613322046666602 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTE 104 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ 104 (207) ..++|+|.|-.+-=+.+-++|.++|...+-++-|..-++-.+.-.++.+.+.++|.. +....+.-|+. T Consensus 127 ~~~~IvvIGNAPTAL~~l~~li~~g~~~PalVIg~PVGFV~AaESKe~L~~~~iP~I-t~~G~kGGS~v 194 (207) T 1ou0_A 127 HRNSVIVIGNAPTALLEAXRXIEENGWYDIPIVGIPVGFINASKAKEGLVSSHIEYI-SVEGHRGGSPI 194 (207) T ss_dssp CSSEEEEESSCHHHHHHHHHHHHHHTCTTCCEEECCCCSHHHHHHHHHHHHSSSCEE-EESSSCCCHHH T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEE-EEECCCCCHHH T ss_conf 699789975880799999999984499997799889876588999999985899989-98259853999 No 29 >>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244) Probab=68.13 E-value=8 Score=18.34 Aligned_cols=99 Identities=8% Similarity=0.007 Sum_probs=64.4 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 999999689982451587654678---99999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|.++|+....+++|....... .+-....+.+.+.....+.......+..+.......++....--..++++++. T Consensus 9 ~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~ 88 (134) T 3g85_A 9 SLLFAKKRYKSAAAILTESLNDAXDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLXKLKNTPKALFCNSDS 88 (134) T ss_dssp HHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHH T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 54331022222222356644217777776541011101223442200102422015677888776504654224420222 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 2199999999862---9-98799964 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~p 151 (207) ....++...++.+ | ++.|+.+. T Consensus 89 ~a~~~~~~l~~~g~~vP~di~ii~f~ 114 (134) T 3g85_A 89 IALGVISVLNKRQISIPDDIEIVAIG 114 (134) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred CCCHHHHHHHHCCCCCCCEEEEEECC T ss_conf 33015677640113588446676326 No 30 >>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} (A:399-520) Probab=67.31 E-value=8.3 Score=18.23 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=56.9 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH Q ss_conf 45687899946985799999999996899824515876546789999987651588613322046666602569999999 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW 113 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~ 113 (207) .-++++|||++-.-. .|..+.+..+..+|+.-- ......+......|+.. .+-+...++.+...++.++ T Consensus 18 ~l~akaIvv~T~sG~---ta~~isk~RP~~pI~a~t-----~~~~~~r~l~l~~GV~p---~~~~~~~~~e~~~~~~~~~ 86 (122) T 3khd_A 18 SIQASLIIALTETGY---TARLIAKYKPSCTILALS-----ASDSTVKCLNVHRGVTC---IKVGSFQGTDIVIRNAIEI 86 (122) T ss_dssp HTTCSEEEEECSSSH---HHHHHHHTCCSSEEEEEE-----SCHHHHHHGGGSTTEEE---EECCSCCCHHHHHHHHHHH T ss_pred HCCCCEEEEECCCCH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHCCCCEEE---EECCCCCCHHHHHHHHHHH T ss_conf 469989999889838---999999549799889986-----98899988655078389---9838879999999999999 Q ss_pred HHHCCC---CEEEEECCHHHH Q ss_conf 986499---818985114421 Q gi|254780579|r 114 AEKNNF---HHVLIVTHDYHM 131 (207) Q Consensus 114 l~~~~~---~~iiLVTs~yHm 131 (207) ++++|+ ...++||+.... T Consensus 87 ~~~~g~~~~GD~vVv~~g~~~ 107 (122) T 3khd_A 87 AKQRNMAKVGDSVIAIHGIKE 107 (122) T ss_dssp HHHTTSSCTTCEEEEEEC-CC T ss_pred HHHCCCCCCCCEEEEEECCCC T ss_conf 998699999898999837679 No 31 >>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:169-300) Probab=66.37 E-value=8.7 Score=18.12 Aligned_cols=99 Identities=9% Similarity=-0.022 Sum_probs=68.1 Q ss_pred HHHHHHHHCCCCCEECCCCCCCCCH----HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9999999689982451587654678----999998765158861332204666660256999999998649981898511 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSVSK----DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH 127 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~~~----~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs 127 (207) .+-.|+++|+....++++..+.... -+-.++.+.+.+++...........+-........+++....--..+++++ T Consensus 8 a~~~L~~~G~r~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~ 87 (132) T 3kjx_A 8 XAQAILKAGYRRIGFXGTKXPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREXTQAXLERSPDLDFLYYSN 87 (132) T ss_dssp HHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEESS T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCC T ss_conf 99999983998641006666556216778888898999729863211000113221233110223202565412453267 Q ss_pred HHHHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 442199999999862---9-9879996 Q gi|254780579|r 128 DYHMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 128 ~yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207) +.....+...+++.. | ++.++.+ T Consensus 88 d~~a~~~l~~l~~~gi~vP~di~iigf 114 (132) T 3kjx_A 88 DXIAAGGLLYLLEQGIDIPGQIGLAGF 114 (132) T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEECS T ss_pred CHHHHHHHHHHHHCCCCCCCCEEEEEE T ss_conf 215678999999869987887599996 No 32 >>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293) Probab=66.06 E-value=8.8 Score=18.08 Aligned_cols=97 Identities=9% Similarity=0.005 Sum_probs=61.6 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 999999689982451587654678---99999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|.++|.....++++....... .+-.++.+.+.+++...+...... .+.+........... ...+.++++++. T Consensus 9 ~~~L~~~G~r~I~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~aii~~~~~ 86 (130) T 2o20_A 9 TKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGN-YSYEQGKALAERLLE-RGATSAVVSHDT 86 (130) T ss_dssp HHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSC-CSHHHHHHHHHHHHH-TTCCEEEESCHH T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECC-CHHHHHHHHHHHHHH-HCCCCEECCCCH T ss_conf 999987188764433478778219999999999999849998855699556-247777999999864-034520013556 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 2199999999862---9-98799964 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~p 151 (207) ++..++..+++.. | |+.++.+- T Consensus 87 ~a~~~~~~l~~~g~~iP~di~ii~fd 112 (130) T 2o20_A 87 VAVGLLSAMMDKGVKVPEDFEIISGA 112 (130) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEESS T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 55554389998289888976999837 No 33 >>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} (A:) Probab=65.52 E-value=9 Score=18.02 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=52.6 Q ss_pred HHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC--------------HHHEECCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999968998245158765467899999876515886--------------1332204666660256999999998 Q gi|254780579|r 50 IERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA--------------ECCIDIGYKALNTEGNAQEASAWAE 115 (207) Q Consensus 50 i~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~--------------~~~I~~e~~s~~T~ena~~~~~~l~ 115 (207) ++..+++.++ +++|++-|.+....-++.+...+...|++ +++++.-..+..|. +.....+.++ T Consensus 37 i~~i~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~-~~~~~~~~ak 113 (200) T 1vim_A 37 VGEMIKLIDS--ARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETT-SVVNISKKAK 113 (200) T ss_dssp HHHHHHHHHH--SSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCH-HHHHHHHHHH T ss_pred HHHHHHHHHC--CCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHEECCCCEEEEECCCCCCH-HHHHHHHHHH T ss_conf 9999999971--995899931642434233101222333222223210330002566156512332202-3799999998 Q ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 6499818985114421999999998629987999641676 Q gi|254780579|r 116 KNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 116 ~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) ++|. +++.+|+..+.+=+ +.+ |+ ++.+|.... T Consensus 114 ~~g~-~vi~IT~~~~s~l~----~~a--d~-~i~~~~~~~ 145 (200) T 1vim_A 114 DIGS-KLVAVTGKRDSSLA----KMA--DV-VMVVKGKMK 145 (200) T ss_dssp HHTC-EEEEEESCTTSHHH----HHC--SE-EEECCSSCT T ss_pred HHCC-CCEEEEECCCCCCC----CCC--CE-EEEECCCCC T ss_conf 6235-64366403554432----336--67-999668864 No 34 >>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293) Probab=64.74 E-value=9.3 Score=17.93 Aligned_cols=98 Identities=8% Similarity=-0.025 Sum_probs=68.3 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHH-HEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 9999996899824515876546789--999987651588613-3220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAEC-CIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~-~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|.++|+.+..++++.....+.. +...+.+.+.+++.. .........+.........+++...+....++++++. T Consensus 9 ~~~L~~~G~r~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~ 88 (132) T 3h5o_A 9 TRHLLSRGKRRIGFLGAQLDERVXKRLDGYRAALDAADCRDAGLEWLDPQPSSXQXGADXLDRALAERPDCDALFCCNDD 88 (132) T ss_dssp HHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHH T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCH T ss_conf 99999759970878640266542200025677776304554310000246236778999999999549998389972645 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 2199999999862---9-9879996 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~ 150 (207) -..-++..++... | ++.++.+ T Consensus 89 ~a~~~~~~l~~~g~~vP~di~ii~f 113 (132) T 3h5o_A 89 LAIGALARSQQLGIAVPERLAIAGF 113 (132) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEECS T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEE T ss_conf 6665434687639988986799998 No 35 >>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A (D:360-499) Probab=63.40 E-value=9.9 Score=17.77 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=54.9 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE--CCCCCCCHHHHHHHHHH Q ss_conf 5687899946985799999999996899824515876546789999987651588613322--04666660256999999 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID--IGYKALNTEGNAQEASA 112 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~--~e~~s~~T~ena~~~~~ 112 (207) -++++|||++-... .|..+.+.-+..+|+.-- ......+......|+....+. ..+...++.+-..++.+ T Consensus 33 l~a~aIvv~T~sG~---ta~~iSr~RP~~pI~a~t-----~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~i~~~~~ 104 (140) T 3hqn_D 33 TKAKAMVVLSNTGR---SARLVAKYRPNCPIVCVT-----TRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVE 104 (140) T ss_dssp HTCSEEEEECSSSH---HHHHHHHTCCSSCEEEEE-----SCHHHHHHGGGSTTEEEEECCHHHHCCCTTCHHHHHHHHH T ss_pred CCCCEEEEECCCHH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 79988999889729---999999559699999988-----9889998875125838999666556652169999999999 Q ss_pred HHHHCCC----CEEEEECCHH Q ss_conf 9986499----8189851144 Q gi|254780579|r 113 WAEKNNF----HHVLIVTHDY 129 (207) Q Consensus 113 ~l~~~~~----~~iiLVTs~y 129 (207) +++++|+ ..+++|+.+. T Consensus 105 ~l~~~g~~~~Gd~Vviv~g~~ 125 (140) T 3hqn_D 105 FAKSKGYVQTGDYCVVIHADH 125 (140) T ss_dssp HHHHTTSCCTTCEEEEEEECC T ss_pred HHHHCCCCCCCCEEEEEECCC T ss_conf 999879998979999984899 No 36 >>1vr9_A CBS domain protein/ACT domain protein; TM0892, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Thermotoga maritima} (A:80-213) Probab=62.94 E-value=10 Score=17.72 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=59.9 Q ss_pred HHHHHHHHHHHCCCCCEECCCCCC----CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 999999999968998245158765----4678999998765158861332204666660256999999998649981898 Q gi|254780579|r 49 RIERAFELLENQIGEKIFISGVHH----SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLI 124 (207) Q Consensus 49 Ri~~a~~L~~~g~~~~ii~SG~~~----~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiL 124 (207) -+.+|+++..+.....+.+...+. -.+..++.+..............-+...-+..++...+.+.|.+++.+.+.+ T Consensus 11 tv~~a~~~l~~~~~~~~pVvd~~~~lvGiit~~di~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 90 (134) T 1vr9_A 11 NITHALLLFLEHQEPYLPVVDEEXRLKGAVSLHDFLEALIEALAXDVPGIRFSVLLEDKPGELRKVVDALALSNINILSV 90 (134) T ss_dssp BHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC------------------------------------ T ss_pred CHHHHHHHHHHCCCCEEEEEEECCEEEEEEEHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 89999999997398678999689999895698999999987402455772467752799988999999999859918899 Q ss_pred ECCHHHHH Q ss_conf 51144219 Q gi|254780579|r 125 VTHDYHMP 132 (207) Q Consensus 125 VTs~yHm~ 132 (207) |.+..+.. T Consensus 91 vd~~~~~~ 98 (134) T 1vr9_A 91 ITTRSGDG 98 (134) T ss_dssp -------- T ss_pred EEEECCCC T ss_conf 98845898 No 37 >>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfamily; 2.20A {Leptospira interrogans} (A:1-180,A:287-366) Probab=62.93 E-value=10 Score=17.72 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=37.7 Q ss_pred HHHH-CCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-------C Q ss_conf 9996-8998245158765467899999876515886133220466666025699999999864998189851-------1 Q gi|254780579|r 56 LLEN-QIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVT-------H 127 (207) Q Consensus 56 L~~~-g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVT-------s 127 (207) +.+. +...++.+.|..-+... ............+..|.+..-...-.+..... .+-. ..++++. . T Consensus 137 ~~~~~~~~~~v~l~G~S~Gg~~--a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~----~~i~-~P~li~~g~~D~~vp 209 (260) T 2pl5_A 137 LVESLGIEKLFCVAGGSMGGMQ--ALEWSIAYPNSLSNCIVMASTAGKGKELTAAL----SNAT-CRFLVVSYSSDWLYP 209 (260) T ss_dssp HHHHTTCSSEEEEEEETHHHHH--HHHHHHHSTTSEEEEEEESCCSCSHHHHHHHH----TTCC-SEEEEEEETTCCSSC T ss_pred HHHHHCCCEEEEEEEHHHHHHH--HHHHHHHCCHHHHEEECCCCCCCCCCCHHHHH----HHCC-CCEEEEEECCCCCCC T ss_conf 9997187716776502467899--99999829506540002346543332699999----6389-988999857651769 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 44219999999986299879996416 Q gi|254780579|r 128 DYHMPRTFLELQRINSTVQFIPYPII 153 (207) Q Consensus 128 ~yHm~RA~~~f~~~~p~i~i~~~pv~ 153 (207) ..|..+-...+++.....++..+|-. T Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (260) T 2pl5_A 210 PAQSREIVKSLEAADKRVFYVELQSG 235 (260) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 99999999999747997699995899 No 38 >>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239) Probab=62.14 E-value=10 Score=17.63 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=68.0 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH--HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH Q ss_conf 999999689982451587654678--999998765158861332204666660256999999998649981898511442 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK--DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH 130 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~--~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH 130 (207) +-.|.++|+....++++.....+. -+-.+..+.+.+........ ..+.+..+......+++....-...++++++.. T Consensus 9 ~~~L~~~G~r~i~~i~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~ 87 (130) T 3k9c_A 9 VDHLTELGHRNIAHIDGADAPGGADRRAGFLAAXDRHGLSASATVV-TGGTTETEGAEGXHTLLEXPTPPTAVVAFNDRC 87 (130) T ss_dssp HHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEE-CCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHH T ss_pred HHHEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHH T ss_conf 2210002353112101224653125778898888763255421223-456641367889999875035751332141021 Q ss_pred HHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 199999999862---9-98799964 Q gi|254780579|r 131 MPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 131 m~RA~~~f~~~~---p-~i~i~~~p 151 (207) ...++..+++.. | ++.|+.+- T Consensus 88 a~~~~~~l~~~g~~iP~di~ii~fd 112 (130) T 3k9c_A 88 ATGVLDLLVRSGRDVPADISVVGYD 112 (130) T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred CCCCEEECCCCCCEEEECCCCCCCC T ss_conf 1442000014684455222245656 No 39 >>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:374-511) Probab=61.40 E-value=11 Score=17.55 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=56.5 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH Q ss_conf 45687899946985799999999996899824515876546789999987651588613322046666602569999999 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW 113 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~ 113 (207) .-++++|||++-.-. .|..+.+.-+..+|+.-- ......+......|+.. .+-+...++.+....+.++ T Consensus 34 ~l~akaIvv~T~sG~---ta~~isk~RP~~pI~a~T-----~~~~~~r~l~l~~GV~p---~~~~~~~~~~~~~~~~~~~ 102 (138) T 3gg8_A 34 CVNAAIILALTETGQ---TARLIAKYRPMQPILALS-----ASESTIKHLQVIRGVTT---MQVPSFQGTDHVIRNAIVV 102 (138) T ss_dssp HHTCSEEEEECSSSH---HHHHHHHTCCSSCEEEEE-----SCHHHHHHGGGSTTEEE---EECCC--CHHHHHHHHHHH T ss_pred HHCCCEEEEECCCCH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHECCCEEE---EECCCCCCHHHHHHHHHHH T ss_conf 506688999859848---999999439799989986-----98799987644077699---9808989999999999999 Q ss_pred HHHCCC---CEEEEECCHHHHH Q ss_conf 986499---8189851144219 Q gi|254780579|r 114 AEKNNF---HHVLIVTHDYHMP 132 (207) Q Consensus 114 l~~~~~---~~iiLVTs~yHm~ 132 (207) ++++|+ ...++|++...+. T Consensus 103 ~~~~g~~~~GD~vVvv~G~~~~ 124 (138) T 3gg8_A 103 AKERELVTEGESIVAVHGMKEE 124 (138) T ss_dssp HHHTTSCCTTCEEEEEEEC--- T ss_pred HHHCCCCCCCCEEEEEECCCCC T ss_conf 9986998996989999476699 No 40 >>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} (A:374-487,A:649-729) Probab=61.26 E-value=11 Score=17.54 Aligned_cols=97 Identities=8% Similarity=-0.033 Sum_probs=53.6 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC-----------CCCCHHHHHHHHHH----HCCCCHHHEECCC Q ss_conf 45687899946985799999999996899824515876-----------54678999998765----1588613322046 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH-----------HSVSKDILLQKIPI----RQDLAECCIDIGY 98 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~-----------~~~~~~~~~~~~~~----~~~i~~~~I~~e~ 98 (207) .....-|+|.|||+-=+..|..|.+.|....|+=.+.. +...+......+.. ........+.+ T Consensus 13 ~~~~k~VlVIGaGPAGLeAA~~LarrG~~VtLiE~~~~iGG~v~~~~~~pg~~~~~~~~~~~~~ql~~l~~~~~~v~~-- 90 (195) T 1o94_A 13 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQL-- 90 (195) T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEE-- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEE-- T ss_conf 566866999831678999999997579948999630542100123335775023456799999999998732646443-- Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH Q ss_conf 66660256999999998649981898511442199999 Q gi|254780579|r 99 KALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFL 136 (207) Q Consensus 99 ~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~ 136 (207) .-.++.. +..-+.+.+...+++=|+-||-..++. T Consensus 91 ~l~~~~~----~~~~i~~~~~D~ViiAT~l~~~l~~~~ 124 (195) T 1o94_A 91 ALGQKPM----TADDVLQYGADKVIIATTLWNELKARE 124 (195) T ss_dssp ECSCCCC----CHHHHHTSCCSEEEECCHHHHHHHHTG T ss_pred CCCCCEE----EEEEHHEECCCEEEEECHHHHHHHHHC T ss_conf 0464036----531011014865899207999876534 No 41 >>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Bacillus stearothermophilus} (A:46-219) Probab=61.08 E-value=11 Score=17.52 Aligned_cols=109 Identities=11% Similarity=-0.011 Sum_probs=57.1 Q ss_pred CCCCEEEEECCC-HHHHHHHHHHHHHC--------CCCCEE-CCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH Q ss_conf 568789994698-57999999999968--------998245-15876546789999987651588613322046666602 Q gi|254780579|r 35 PSVSAIVVLTGE-PIRIERAFELLENQ--------IGEKIF-ISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTE 104 (207) Q Consensus 35 ~~~DaIVVLgGg-~~Ri~~a~~L~~~g--------~~~~ii-~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ 104 (207) ...|.||++|-| ..=-..++.-.-.+ ..+++. .+..++ +.+...+......+..+++-.+|-+|. T Consensus 25 ~g~~~vv~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~~~~~dn~Dp-----~~~~~~l~~l~~~~Tl~iviSKSG~T~ 99 (174) T 1b0z_A 25 NHSDALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISS-----TYISHLLDVLEGKDLSINVISKSGTTT 99 (174) T ss_dssp HHCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSTTSCEEEEESSSCCH-----HHHHHHHHHHTTCCEEEEEECSSSCCH T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH-----HHHHHHHHCCCCCCEEEEEECCCCCCH T ss_conf 269889998040676999999999876876422677637983189997-----999999832477760389844999866 Q ss_pred H---HHHHHHHHHHHCCC-----C-EEEEECCHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5---69999999986499-----8-18985114421999999998629987999641 Q gi|254780579|r 105 G---NAQEASAWAEKNNF-----H-HVLIVTHDYHMPRTFLELQRINSTVQFIPYPI 152 (207) Q Consensus 105 e---na~~~~~~l~~~~~-----~-~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv 152 (207) | |++..++|+++.+. + .++++|.+--.-|.... +. +.++.+.|- T Consensus 100 ET~~~~~~~~~~l~~~~~~~~~~~~~~v~tt~~~~~l~~~a~--~~--~~~~f~~~~ 152 (174) T 1b0z_A 100 EPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLAD--QE--GYETFVIPD 152 (174) T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGEEEEECSSCSHHHHHHH--HH--TCEEEECCT T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCEECCCCCHHHHHHHHHH--HH--HHHHHHHHH T ss_conf 788889999999987304266652611023331334443212--67--766665421 No 42 >>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} (A:218-446) Probab=60.78 E-value=11 Score=17.49 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=21.2 Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEE-CC--CCCCCCCHHHHHHHHHHHCCCCH Q ss_conf 78999469857999999999968998245-15--87654678999998765158861 Q gi|254780579|r 38 SAIVVLTGEPIRIERAFELLENQIGEKIF-IS--GVHHSVSKDILLQKIPIRQDLAE 91 (207) Q Consensus 38 DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii-~S--G~~~~~~~~~~~~~~~~~~~i~~ 91 (207) +++|.++||.+=.-.+.-+.+......+. ++ -+.....+.+.++..+...|++- T Consensus 25 ~v~v~~SGG~DSs~ll~l~~~~~~~~~i~~v~~~~g~~~~~~~~~a~~~a~~lgi~~ 81 (229) T 2vxo_A 25 KVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQV 81 (229) T ss_dssp EEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCCSSTTHHHHHHHHHTTCCE T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCE T ss_conf 513663057513889999998504364379995633478655999999999849976 No 43 >>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285) Probab=58.77 E-value=12 Score=17.27 Aligned_cols=96 Identities=15% Similarity=0.028 Sum_probs=63.2 Q ss_pred HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 99999968998245158765467---899999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|+++|+....+++|...... ..+-+++.+.+.+++...+.....+... -.....+++....-...++++++. T Consensus 9 ~~~L~~~G~r~I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~ 86 (130) T 3ctp_A 9 FDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVK--MLEEDINSMKDIVNYDGIFVFNDI 86 (130) T ss_dssp HHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGG--GGGCCCTTGGGGGGSSEEEESSHH T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHCCHH T ss_conf 999998699669996463454168888876201366513562223210024577--899999998505599845524658 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 2199999999862---9-9879996 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~ 150 (207) ...-++..+++.+ | ++.++.+ T Consensus 87 ~A~~~~~~l~~~g~~ip~di~iigf 111 (130) T 3ctp_A 87 AAATVMRALKKRGVSIPQEVQIIGF 111 (130) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEECS T ss_pred HHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 7899999999849998843332124 No 44 >>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387) Probab=58.20 E-value=12 Score=17.21 Aligned_cols=90 Identities=8% Similarity=-0.070 Sum_probs=38.8 Q ss_pred HHHHHHHHCCCCCEECCCCCC--CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 999999968998245158765--467899999876515886133220466666025699999999864998189851144 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHH--SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~--~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) ..+++.++...+++.+-+.+. ..+..+.++..+.+.|..-.......-.. +..+......-++..+-+=++++.+.- T Consensus 8 ala~~l~~~g~kkVaII~~d~~yG~~~~~~f~~~l~~~G~~V~~~~~i~~~~-~~~d~~~~i~kik~a~pdvVi~~~~~~ 86 (200) T 3i45_A 8 MLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPAL-YKLDAGPTVQALQQAEPEGLFNVLFGA 86 (200) T ss_dssp HHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCT-TCCCHHHHHHHHHHTCCSEEEECCCTT T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCHHHHHHHHHHHCCCCEEEEEECCH T ss_conf 9999988628717854478967889999988877752366136887664026-651167898888860983899993337 Q ss_pred HHHHHHHHHHHHC Q ss_conf 2199999999862 Q gi|254780579|r 130 HMPRTFLELQRIN 142 (207) Q Consensus 130 Hm~RA~~~f~~~~ 142 (207) ........+++.. T Consensus 87 ~a~~~ikqa~~~G 99 (200) T 3i45_A 87 DLPKFVREGRVRG 99 (200) T ss_dssp HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHC T ss_conf 8999999999818 No 45 >>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:110-246) Probab=57.90 E-value=12 Score=17.18 Aligned_cols=98 Identities=12% Similarity=-0.037 Sum_probs=68.2 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH Q ss_conf 9999996899824515876546789--99998765158861332204666660256999999998649981898511442 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH 130 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH 130 (207) +-.|.++|+....+++|.....+.. +-....+.+.+.............+..+........+..++. ..++++++.. T Consensus 12 ~~~L~~~G~~~i~~l~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ai~~~~D~~ 90 (137) T 2fqx_A 12 ALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGV-NVIFQVAGGT 90 (137) T ss_dssp HHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTC-CEEEEECGGG T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEECCCCC T ss_conf 974403787469996265662157899999999997399736876415875774589999999862699-7999747886 Q ss_pred HHHHHHHHHHHC--C-CCEEEEEE Q ss_conf 199999999862--9-98799964 Q gi|254780579|r 131 MPRTFLELQRIN--S-TVQFIPYP 151 (207) Q Consensus 131 m~RA~~~f~~~~--p-~i~i~~~p 151 (207) ..-+...+++.+ | |+.++.+- T Consensus 91 A~g~~~al~~~g~~P~di~iig~d 114 (137) T 2fqx_A 91 GNGVIKEARDRRLNGQDVWVIGVD 114 (137) T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEE T ss_pred CCHHHHHHHHHHHCCCCEEEEEEE T ss_conf 616999999875146985899984 No 46 >>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:115-246) Probab=57.21 E-value=13 Score=17.11 Aligned_cols=97 Identities=12% Similarity=-0.008 Sum_probs=62.0 Q ss_pred HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH-HHHHHHHHCCCCEEEEECCH Q ss_conf 99999968998245158765467---899999876515886133220466666025699-99999986499818985114 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQ-EASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~-~~~~~l~~~~~~~iiLVTs~ 128 (207) +-.|.++|+.+..++++...... .-+-.+..+.+.+++.......... .+.+.+. ....++...+-...++++++ T Consensus 9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aii~~~d 87 (132) T 3k4h_A 9 AEYLISLGHKQIAFIGGGSDLLVTRDRLAGXSDALKLADIVLPKEYILHFD-FSRESGQQAVEELXGLQQPPTAIXATDD 87 (132) T ss_dssp HHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC-SSHHHHHHHHHHHHTSSSCCSEEEESSH T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 777765315406999437775066655455411034302466520022333-2224799999999946999978974585 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 42199999999862---9-9879996 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207) .....+...++... | ++.++.+ T Consensus 88 ~~a~~~~~~l~~~g~~iP~di~iigf 113 (132) T 3k4h_A 88 LIGLGVLSALSKKGFVVPKDVSIVSF 113 (132) T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEE T ss_pred CCCCHHHHHHHHCCCCCCCCEEEEEC T ss_conf 21100279999808877751368630 No 47 >>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:1-41,A:233-288,A:396-433) Probab=55.60 E-value=14 Score=16.95 Aligned_cols=52 Identities=6% Similarity=-0.229 Sum_probs=35.8 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 8999469857999999999968998245158765467899999876515886 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA 90 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~ 90 (207) =+||.|||..=+..|..|.+.|+.-.++=-.......-++.+.+.+.+.|+. T Consensus 8 ~vvviG~G~~g~~~a~~l~~~g~~v~~ie~~~~~d~~l~~~l~~~l~~~Gv~ 59 (135) T 1d5t_A 8 DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYLGELPQGFARLSAIYGGT 59 (135) T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSTTHHHHHHHHHHHHHTCC T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCE T ss_conf 8899895989999999999889979998899999689999999999852690 No 48 >>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} (A:107-382) Probab=55.20 E-value=14 Score=16.91 Aligned_cols=96 Identities=6% Similarity=-0.056 Sum_probs=62.7 Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCH-------HHHHHHHHHHHHHCCC Q ss_conf 579999999999689982451587654678999998765158861332204666660-------2569999999986499 Q gi|254780579|r 47 PIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNT-------EGNAQEASAWAEKNNF 119 (207) Q Consensus 47 ~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T-------~ena~~~~~~l~~~~~ 119 (207) ..-+...+-...+.....+++.+.++...|..-+.......+.-+..+.+-..+... -.-|...++++.++|- T Consensus 82 KT~l~~~i~~~~~~~~~~~V~~~iger~~ev~e~~~~~~~~~~~~~t~vv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~ 161 (276) T 2r9v_A 82 KTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFAYSGR 161 (276) T ss_dssp HHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCC T ss_conf 67889987876513577468863152277799999987424875504999977999999999998887412244440699 Q ss_pred CEEEEECCHHHHHHHHHHHHHHC Q ss_conf 81898511442199999999862 Q gi|254780579|r 120 HHVLIVTHDYHMPRTFLELQRIN 142 (207) Q Consensus 120 ~~iiLVTs~yHm~RA~~~f~~~~ 142 (207) +-+++..|-+..-||..+..... T Consensus 162 ~Vlll~Dsltr~a~A~reis~~~ 184 (276) T 2r9v_A 162 DALVVYDDLSKHAVAYRQLSLLX 184 (276) T ss_dssp EEEEEEETHHHHHHHHHHHHHTS T ss_pred CEEEEECCCHHHHHHHHHHHHHC T ss_conf 57999607188899999999873 No 49 >>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242) Probab=54.70 E-value=14 Score=16.86 Aligned_cols=99 Identities=12% Similarity=-0.024 Sum_probs=61.8 Q ss_pred HHHHHHH--CCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 9999996--899824515876546789--999987651588613322046666602569999999986499818985114 Q gi|254780579|r 53 AFELLEN--QIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~--g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) |-.|.++ |+.+..+++|.....+.. +-+.+.+.+.+.+...+.......+..+.......+++.++--..++++++ T Consensus 9 ~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~ 88 (134) T 3g1w_A 9 AYKXAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEA 88 (134) T ss_dssp HHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSH T ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 99999971457619999312431289999999999987577663145751665358899999987403899888997774 Q ss_pred HHHHHHHHHHHHHC-C-CCEEEEEE Q ss_conf 42199999999862-9-98799964 Q gi|254780579|r 129 YHMPRTFLELQRIN-S-TVQFIPYP 151 (207) Q Consensus 129 yHm~RA~~~f~~~~-p-~i~i~~~p 151 (207) -..-.+...++... | ++.++.+- T Consensus 89 ~~a~g~~~al~~~g~~~di~i~g~d 113 (134) T 3g1w_A 89 NGGVGVGDAVRLESRAGEIQIISFD 113 (134) T ss_dssp HHHHHHHHHHHHTTCTTTSEEEEES T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 8999999999976999983999978 No 50 >>3bq9_A Predicted rossmann fold nucleotide-binding domain-containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica OS145} (A:86-460) Probab=54.63 E-value=14 Score=16.85 Aligned_cols=93 Identities=10% Similarity=-0.105 Sum_probs=46.6 Q ss_pred CCEEEEECCCH-----HHHHHHHHHHHH-CCCCCEECCCCCCCCCHHHHHHHHHH----------HCCCC---------- Q ss_conf 87899946985-----799999999996-89982451587654678999998765----------15886---------- Q gi|254780579|r 37 VSAIVVLTGEP-----IRIERAFELLEN-QIGEKIFISGVHHSVSKDILLQKIPI----------RQDLA---------- 90 (207) Q Consensus 37 ~DaIVVLgGg~-----~Ri~~a~~L~~~-g~~~~ii~SG~~~~~~~~~~~~~~~~----------~~~i~---------- 90 (207) ...|.|.||+. .-.+.|.+|-+. +.....+++|++++.-++........ ..|+. T Consensus 58 ~~~V~Vfgsar~~~~~~~y~~A~elG~~La~~g~~ivTGGGpG~Meaa~~GA~~a~~~~~~~gG~siGi~~~~l~~ee~~ 137 (375) T 3bq9_A 58 EEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPP 137 (375) T ss_dssp CCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTTSCC T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHCCC T ss_conf 99887998489989979999999999999987997998986788878999887612556557855666467754221057 Q ss_pred -----------------------HHHEECCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCHH Q ss_conf -----------------------13322046666602569999999986499----8189851144 Q gi|254780579|r 91 -----------------------ECCIDIGYKALNTEGNAQEASAWAEKNNF----HHVLIVTHDY 129 (207) Q Consensus 91 -----------------------~~~I~~e~~s~~T~ena~~~~~~l~~~~~----~~iiLVTs~y 129 (207) ...+++-+-.--|.||+.++..|++.... --++|+-..| T Consensus 138 N~~v~~li~~~~~~~Rk~~fv~~sda~IvlPGG~GTldElfe~Ltl~q~g~~~~~p~PiVL~G~~~ 203 (375) T 3bq9_A 138 NPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPAS 203 (375) T ss_dssp CTTCSEEEECSSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGG T ss_pred CCCCCEEEEECCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 877772799588999999999967989993898763999999999985322788871289978854 No 51 >>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} (A:) Probab=54.53 E-value=14 Score=16.84 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=62.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 99946985799999999996899824515876546789999987651588613322046666602569999999986499 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF 119 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~ 119 (207) +....||..|.....+.+.....-.+... .+..+.............+....+++-..--+|-+.+..+.+.++++|. T Consensus 74 v~~~~gg~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dv~g~~viivDdii~TG~T~~~a~~~Lk~~Ga 151 (208) T 1v9s_A 74 VAILRAGLVXVEGILKLVPHARVGHIGLY--RDPESLNPVQYYIKLPPDIAERRAFLLDPXLATGGSASLALSLLKERGA 151 (208) T ss_dssp EEETTTHHHHHHHHHTTCTTCEEEEEEEC-----------CEEEECCSCGGGSCEEEECSEESSSHHHHHHHHHHHHTTC T ss_pred EEEECCCCHHHHHHHHHHCCCCCCEEEEE--ECCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC T ss_conf 66642552467899998515554347898--2267888688766558653456699978066424779999999986599 Q ss_pred CEEEEECCHHHH-HHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 818985114421-999999998629987999641676 Q gi|254780579|r 120 HHVLIVTHDYHM-PRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 120 ~~iiLVTs~yHm-~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) ++|.++. .|. .-+...+.+.+++..++...++.. T Consensus 152 ~~I~~~~--~h~~~~a~~~i~~~~~~~~i~t~ti~~~ 186 (208) T 1v9s_A 152 TGVKLXA--ILAAPEGLERIAKDHPDTEVVVAAIDER 186 (208) T ss_dssp CSCEEEE--EEECHHHHHHHHHHCTTCEEEEEEECSE T ss_pred CCEEEEE--EEECHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 8469999--9854789999998787988999985687 No 52 >>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230) Probab=54.13 E-value=14 Score=16.80 Aligned_cols=98 Identities=8% Similarity=-0.001 Sum_probs=63.9 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH-HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 999999689982451587654678-9999987651588613322046666602569999999986499818985114421 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK-DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM 131 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~-~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm 131 (207) +-.|+++|+....++++..+...+ .+-.+..+.+.+++...... ....+...-.....+++...+-...++++++... T Consensus 9 ~~~L~~~G~~~i~~i~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a 87 (129) T 3gyb_A 9 TKHLIDLGHTHIAHLRVGSGAGLRRFESFEATXRAHGLEPLSNDY-LGPAVEHAGYTETLALLKEHPEVTAIFSSNDITA 87 (129) T ss_dssp HHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCC-CSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHH T ss_pred CCHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHH T ss_conf 000011022322000123202356677777899997430121123-3334377765566777651368635531253311 Q ss_pred HHHHHHHHHHC---C-CCEEEEEE Q ss_conf 99999999862---9-98799964 Q gi|254780579|r 132 PRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 132 ~RA~~~f~~~~---p-~i~i~~~p 151 (207) .+.+..+++.+ | ++.++..- T Consensus 88 ~~~~~~l~~~g~~ip~di~ivgfd 111 (129) T 3gyb_A 88 IGALGAARELGLRVPEDLSIIGYD 111 (129) T ss_dssp HHHHHHHHHHTCCTTTTCEEEEES T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 357899887633000110245425 No 53 >>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} (A:1-124) Probab=53.12 E-value=15 Score=16.70 Aligned_cols=108 Identities=7% Similarity=-0.011 Sum_probs=71.5 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC--CCCC-----CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH Q ss_conf 687899946985799999999996899824515--8765-----467899999876515886133220466666025699 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFIS--GVHH-----SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQ 108 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S--G~~~-----~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~ 108 (207) +-.++|-++||.|=.-.+.-|.++|+....+.. +... .....+..+.+....+++-..+..+....+.+.... T Consensus 4 ~~kv~v~~SGG~DS~~~l~ll~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~v~~~~~~~~~~~~~~ 83 (124) T 2d13_A 4 LADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGEKEKEVEDLK 83 (124) T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--CTTSHHHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH T ss_conf 24199991686999999999998598279999987288995605477899999999875999336624687228999999 Q ss_pred HHHHHHHHCCCCEEEE--ECCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 9999998649981898--511442199999999862998799 Q gi|254780579|r 109 EASAWAEKNNFHHVLI--VTHDYHMPRTFLELQRINSTVQFI 148 (207) Q Consensus 109 ~~~~~l~~~~~~~iiL--VTs~yHm~RA~~~f~~~~p~i~i~ 148 (207) .. ..+++...+.. +-++.++.......++. |++.+ T Consensus 84 ~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--G~~~l 120 (124) T 2d13_A 84 NV---LEGLKVDGIVAGALASRYQKERIENVAREL--GLKVY 120 (124) T ss_dssp HH---HHTBCCSEEECCCSSCHHHHHHHHHHHHHH--TCEEE T ss_pred HH---HHHHCCCEEEECCCHHHHHHHHHHHHHHHC--CCEEE T ss_conf 99---996188659982001178899999889872--96898 No 54 >>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:107-246) Probab=52.94 E-value=15 Score=16.68 Aligned_cols=91 Identities=2% Similarity=-0.060 Sum_probs=55.7 Q ss_pred HCCCCCEECCCCCCCC---CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH Q ss_conf 6899824515876546---7899999876515886133220466666025699999999864998189851144219999 Q gi|254780579|r 59 NQIGEKIFISGVHHSV---SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTF 135 (207) Q Consensus 59 ~g~~~~ii~SG~~~~~---~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~ 135 (207) +|+.+..+++|..... ...+-.+..+.+.+........ ....+..+-......+++.+.--+.++++++.....+. T Consensus 23 ~g~~~i~~i~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nd~~a~g~~ 101 (140) T 2fn9_A 23 AKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ-SAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAM 101 (140) T ss_dssp CSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEE-ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH T ss_conf 65551465138877505789998999998651455622688-33300278999999998513222236765761003389 Q ss_pred HHHHHHCC-CCEEEEE Q ss_conf 99998629-9879996 Q gi|254780579|r 136 LELQRINS-TVQFIPY 150 (207) Q Consensus 136 ~~f~~~~p-~i~i~~~ 150 (207) ..+++..| ++.++.+ T Consensus 102 ~al~~~g~~di~vig~ 117 (140) T 2fn9_A 102 KACEAAGRTDIYIFGF 117 (140) T ss_dssp HHHHHTTCTTCEEECC T ss_pred HHHHHHCCCCCCCCCC T ss_conf 9999737467531368 No 55 >>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:99-232) Probab=52.33 E-value=15 Score=16.62 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=60.1 Q ss_pred HHHHHHHCCCCCEECCCCCCC----CC----HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 999999689982451587654----67----8999998765158861332204666660256999999998649981898 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHS----VS----KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLI 124 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~----~~----~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiL 124 (207) +-.|+++|.....++++.... .. ..+.++..+.+.+++-..........+-..-.....+++....--..++ T Consensus 8 ~~~L~~~G~~~I~~i~~~~~~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii 87 (134) T 2h0a_A 8 GAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF 87 (134) T ss_dssp HHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 99999852871499944786421000589988876531133210112212100024210134555443231136774341 Q ss_pred ECCHHHHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 511442199999999862---9-9879996 Q gi|254780579|r 125 VTHDYHMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 125 VTs~yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207) ++++......+..++... | ++.|+.+ T Consensus 88 ~~~d~~a~~~~~~l~~~g~~vp~di~ii~~ 117 (134) T 2h0a_A 88 AGADQVALGVLEEAVRLGLTPGRDVRVLGF 117 (134) T ss_dssp CSSHHHHHHHHHHHHTTSCTTTTSEEEEEE T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 210477888888886427642134322122 No 56 >>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:113-257) Probab=52.27 E-value=15 Score=16.62 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=53.2 Q ss_pred HHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHH-HHHHCC--CCEEEEECCHH Q ss_conf 99968998245158765467---8999998765158861332204666660256999999-998649--98189851144 Q gi|254780579|r 56 LLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASA-WAEKNN--FHHVLIVTHDY 129 (207) Q Consensus 56 L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~-~l~~~~--~~~iiLVTs~y 129 (207) |.++|+....++.|...... ...-....+.+.+.+-..+... ...++.+.+....+ ++..++ --..++++++. T Consensus 23 l~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~ 101 (145) T 2fvy_A 23 LNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD-TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 101 (145) T ss_dssp TTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEE-ECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHH T ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE-ECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHH T ss_conf 114798269999478666505777777999998629863232366-2211267888888876655314776310112047 Q ss_pred HHHHHHHHHHHHCC-CCEEEEE Q ss_conf 21999999998629-9879996 Q gi|254780579|r 130 HMPRTFLELQRINS-TVQFIPY 150 (207) Q Consensus 130 Hm~RA~~~f~~~~p-~i~i~~~ 150 (207) ....+...+++..| ++.++.+ T Consensus 102 ~a~~~~~al~~~gp~di~ivg~ 123 (145) T 2fvy_A 102 MAMGAVEALKAHNKSSIPVFGV 123 (145) T ss_dssp HHHHHHHHHHHTTCTTSCEECS T ss_pred HHHHHHHHHHHCCCCCCEEEEC T ss_conf 7789999999809998806745 No 57 >>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243) Probab=51.80 E-value=16 Score=16.57 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=65.4 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 999999689982451587654678---99999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|+++|+....+++|....... .+-..+.+.+.+++...........+-..-.....+++...+....++++++. T Consensus 10 ~~~L~~~G~~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 89 (133) T 2rgy_A 10 AATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDT 89 (133) T ss_dssp HHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCH T ss_conf 45676530011000246755443111121367899872886431212234567888999986530135687534346836 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 2199999999862---9-98799964 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~p 151 (207) ....++...+... | ++.++..- T Consensus 90 ~a~~~~~~l~~~g~~vP~di~ivgfd 115 (133) T 2rgy_A 90 XAVSALARFQQLGISVPGDVSVIGYD 115 (133) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 76655677765045578521022146 No 58 >>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} (A:1-39,A:103-166) Probab=50.69 E-value=16 Score=16.47 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=36.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-CCHHHHHHHHHHHCCCC Q ss_conf 89994698579999999999689982451587654-67899999876515886 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-VSKDILLQKIPIRQDLA 90 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-~~~~~~~~~~~~~~~i~ 90 (207) -++|.|||+.=+..|..|.+.+....++=...... ..-++.....+.+.|+. T Consensus 4 ~~~iiG~g~~g~~~a~~~~~~~~~vt~i~~~~~~~~~~i~~~l~~~l~~~gI~ 56 (103) T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVTEVTRDLMEAREACGAT 56 (103) T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHHHHHHHHTTCE T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99999957999999999997899999994699987689999999977642763 No 59 >>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292) Probab=50.17 E-value=16 Score=16.42 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=65.7 Q ss_pred HHHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 999999968998245158765467---89999987651588613322046666602569999999986499818985114 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) .+-.|+++|+....+++|...... ..+-++..+.+.+++...+.... .+..........++....-...++++++ T Consensus 8 a~~~l~~~G~r~I~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ai~~~~d 85 (130) T 1jye_A 8 GVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGD--WSAMSGFQQTMQMLNEGIVPTAMLVAND 85 (130) T ss_dssp HHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECC--SSHHHHHHHHHHHHHTTCCCSEEEESSH T ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCEEEECCH T ss_conf 99999975996699994774322899999999999997599864343477--5177799999999735999836874888 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 42199999999862---9-9879996 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207) .....++..++... | ++.++.+ T Consensus 86 ~~a~~~l~~l~~~g~~ip~di~ivgf 111 (130) T 1jye_A 86 QMALGAMRAITESGLRVGADISVVGY 111 (130) T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEECS T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 99999999999808978998699983 No 60 >>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:207-367) Probab=50.10 E-value=17 Score=16.41 Aligned_cols=89 Identities=6% Similarity=-0.174 Sum_probs=51.0 Q ss_pred CCCCCCEEEEECCCHHHH--H-HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH Q ss_conf 545687899946985799--9-9999999689982451587654678999998765158861332204666660256999 Q gi|254780579|r 33 DHPSVSAIVVLTGEPIRI--E-RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQE 109 (207) Q Consensus 33 ~~~~~DaIVVLgGg~~Ri--~-~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~ 109 (207) .-.+++-|+++|.|.... . .+..|.+.+..+....+........ .... -+++.+++-..+..|.|.... T Consensus 12 ~l~~a~~I~i~G~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~d~vi~iS~sg~t~e~~~~ 83 (161) T 2poc_A 12 SLNDQKSLLLLGRGYQFATALEGALKIKEISYMHSEGVLAGELKHGI-------LALV-DEDLPIIAFATRDSLFPKVMS 83 (161) T ss_dssp GGGGCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEETTCC-------------------CCEEEECCGGGCCHHHHH T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHCCH-------HHHC-CCCCCEEEEECCCCHHHHHHH T ss_conf 52356527997687885057899999862257314457789986040-------5415-699744788358710344454 Q ss_pred HHHHHHHCCCCEEEEECCHHH Q ss_conf 999998649981898511442 Q gi|254780579|r 110 ASAWAEKNNFHHVLIVTHDYH 130 (207) Q Consensus 110 ~~~~l~~~~~~~iiLVTs~yH 130 (207) ..+.++++|.+ ++++|+... T Consensus 84 ~~~~~k~~g~~-vi~It~~~~ 103 (161) T 2poc_A 84 AIEQVTARDGR-PIVICNEGD 103 (161) T ss_dssp HHHHHHHTTCC-CEEEEETTC T ss_pred HHHHHHHCCCE-EEEEEECCC T ss_conf 79999966981-899993784 No 61 >>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} (A:) Probab=50.06 E-value=17 Score=16.40 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=28.7 Q ss_pred CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 613322046666602569999999986499818985114421999 Q gi|254780579|r 90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA 134 (207) +.+.++.-.++..|.+- ..+.+.++++|. .+|.+|+.-+.+=+ T Consensus 108 ~~dlvI~iS~sG~t~~~-i~a~~~ak~~G~-~vI~iT~~~~S~l~ 150 (243) T 3cvj_A 108 NKDVIXIISNSGRNTVP-VEXAIESRNIGA-KVIAXTSXKHSQKV 150 (243) T ss_dssp TTCEEEEECSSCCSHHH-HHHHHHHHHHTC-EEEEEECHHHHHHS T ss_pred CCCEEEEECCCCCCHHH-HHHHHHHHHCCC-EEEEEECCCCCCCC T ss_conf 89989997789998999-999999998699-79999568887442 No 62 >>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:109-239) Probab=48.66 E-value=17 Score=16.27 Aligned_cols=97 Identities=9% Similarity=-0.072 Sum_probs=64.2 Q ss_pred HHHHHHCCCCCEECCCCCCCCCHH---HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH Q ss_conf 999996899824515876546789---99998765158861332204666660256999999998649981898511442 Q gi|254780579|r 54 FELLENQIGEKIFISGVHHSVSKD---ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH 130 (207) Q Consensus 54 ~~L~~~g~~~~ii~SG~~~~~~~~---~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH 130 (207) =.|.++|+....+++|........ ......+.+.+++....... ....+.+.-.....++........++++++.. T Consensus 10 ~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~ 88 (131) T 3clk_A 10 NLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIK-PGDYSYTSGEQAXKAFGKNTDLTGIIAASDXT 88 (131) T ss_dssp HHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEE-CCCSSHHHHHHHHHHHCTTCCCSEEEESSHHH T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 44222332112234788322201445677777788708653200012-22101221113334566456674675324544 Q ss_pred HHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 199999999862---9-98799964 Q gi|254780579|r 131 MPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 131 m~RA~~~f~~~~---p-~i~i~~~p 151 (207) +..++..+++.. | ++.++.+- T Consensus 89 a~~~~~~l~~~g~~iP~di~ii~fd 113 (131) T 3clk_A 89 AIGILNQASSFGIEVPKDLSIVSID 113 (131) T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 3332201144456687422232467 No 63 >>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:107-232) Probab=48.11 E-value=18 Score=16.22 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=59.7 Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 99999999689982451587654678---999998765158861332204666660256999999998649981898511 Q gi|254780579|r 51 ERAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH 127 (207) Q Consensus 51 ~~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs 127 (207) ..+.+|+++|..+..++++....... .+-.++.+.+.+.+.. . .-.+..+......++++...-...+++++ T Consensus 6 ~~a~~ll~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ai~~~~ 80 (126) T 3hs3_A 6 KESIKLLSKKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYL---L--EETPENNPYISAQSALNKSNQFDAIITVN 80 (126) T ss_dssp HHHHHTSCTTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE---E--EECCSSCHHHHHHHHHHTGGGCSEEECSS T ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE---E--EECCCCCHHHHHHHHHHCCCCCCEEEECC T ss_conf 888777644872699982662100467776789988643475301---3--20355448999999985478998899648 Q ss_pred HHHHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 442199999999862---9-9879996 Q gi|254780579|r 128 DYHMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 128 ~yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207) +...-.....+++.. | ++.++.+ T Consensus 81 d~~a~~v~~~l~~~g~~ip~di~i~~f 107 (126) T 3hs3_A 81 DLYAAEIIKEAKRRNLKIPDDFQLVGY 107 (126) T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEECS T ss_pred CHHHHHHHHHHHHCCCCCCCCCCEEEE T ss_conf 588887989999749877864321430 No 64 >>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237) Probab=47.65 E-value=18 Score=16.17 Aligned_cols=98 Identities=5% Similarity=0.007 Sum_probs=63.8 Q ss_pred HHHHHHH--CCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9999996--8998245158765467---8999998765158861332204666660256999999998649981898511 Q gi|254780579|r 53 AFELLEN--QIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH 127 (207) Q Consensus 53 a~~L~~~--g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs 127 (207) +=.|.++ |+....+++|...... ...-+...+.+.+.+.... ......+..+....+++++..+.--..+++.+ T Consensus 9 ~~~L~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 87 (133) T 2ioy_A 9 AEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA-KQAADFDRSKGLSVMENILQAQPKIDAVFAQN 87 (133) T ss_dssp HHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE-EEECTTCHHHHHHHHHHHHHHCSCCCEEEESS T ss_pred HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEE-EECCCCCHHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 99999866999879999799998699999999999998789980577-75164117999999999985696983999678 Q ss_pred HHHHHHHHHHHHHHCC-CCEEEEEE Q ss_conf 4421999999998629-98799964 Q gi|254780579|r 128 DYHMPRTFLELQRINS-TVQFIPYP 151 (207) Q Consensus 128 ~yHm~RA~~~f~~~~p-~i~i~~~p 151 (207) +.....+...+++..| ++.++.+- T Consensus 88 d~~a~g~~~al~~~gp~di~iig~d 112 (133) T 2ioy_A 88 DEMALGAIKAIEAANRQGIIVVGFD 112 (133) T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEE T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 0888877999998199987799853 No 65 >>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli} (A:) Probab=47.35 E-value=18 Score=16.14 Aligned_cols=97 Identities=8% Similarity=-0.007 Sum_probs=51.3 Q ss_pred CCCCEEEEECCCHHH-HHH--HHHHHHHCCCCCEECCCCC-------------CCCCHHHHHHHHHHHCCCCHHHEECCC Q ss_conf 568789994698579-999--9999996899824515876-------------546789999987651588613322046 Q gi|254780579|r 35 PSVSAIVVLTGEPIR-IER--AFELLENQIGEKIFISGVH-------------HSVSKDILLQKIPIRQDLAECCIDIGY 98 (207) Q Consensus 35 ~~~DaIVVLgGg~~R-i~~--a~~L~~~g~~~~ii~SG~~-------------~~~~~~~~~~~~~~~~~i~~~~I~~e~ 98 (207) .+++-|.+.|-|... +.. +..|.+.|..+..+..+.. ....+........... -+++.++.-. T Consensus 39 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~iS 117 (196) T 2yva_A 39 LNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALG-HAGDVLLAIS 117 (196) T ss_dssp HTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHC-CTTCEEEEEC T ss_pred HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHC-CCCCEEEEEE T ss_conf 879979999788017768778989998874134333210344552001111353027788999999862-7884799984 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 666602569999999986499818985114421999 Q gi|254780579|r 99 KALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 99 ~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA 134 (207) .+..|. +.....+.++++|. +++.+|+..+.+=+ T Consensus 118 ~sG~t~-~~~~~~~~ak~~g~-~~i~IT~~~~s~l~ 151 (196) T 2yva_A 118 TRGNSR-DIVKAVEAAVTRDM-TIVALTGYDGGELA 151 (196) T ss_dssp SSSCCH-HHHHHHHHHHHTTC-EEEEEECTTCHHHH T ss_pred CCCCCH-HHHHHHHHHHHHCC-EEEEEECCCCCHHH T ss_conf 477520-25689999997348-18999825884577 No 66 >>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} (A:) Probab=46.16 E-value=19 Score=16.03 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=46.3 Q ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC--------------HHHEECCCCCCCHHHHHHHHHHHH Q ss_conf 999999999968998245158765467899999876515886--------------133220466666025699999999 Q gi|254780579|r 49 RIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA--------------ECCIDIGYKALNTEGNAQEASAWA 114 (207) Q Consensus 49 Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~--------------~~~I~~e~~s~~T~ena~~~~~~l 114 (207) .+++.+++.++ +.+|++-|.+....-++.+...+...|.+ ++.+++-..+.+| .+.....+.+ T Consensus 29 ~~~~~~~~l~~--a~~i~i~g~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~~-~~~~~~~~~a 105 (180) T 1jeo_A 29 KLDSLIDRIIK--AKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRT-ESVLTVAKKA 105 (180) T ss_dssp HHHHHHHHHHH--CSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCC-HHHHHHHHHH T ss_pred HHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCCCH-HHHHHHHHHH T ss_conf 99999999978--99399997788999999999999977972375212324678988889997699980-8999999999 Q ss_pred HHCCCCEEEEECCHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 864998189851144-21999999998629987999641676667 Q gi|254780579|r 115 EKNNFHHVLIVTHDY-HMPRTFLELQRINSTVQFIPYPIISHDLE 158 (207) Q Consensus 115 ~~~~~~~iiLVTs~y-Hm~RA~~~f~~~~p~i~i~~~pv~~~~~~ 158 (207) +++|.+ ++.+|++- .+.+. + + ...++|....... T Consensus 106 k~~g~~-vI~iT~~~s~l~~~------a--d-~~l~~~~~~~~~~ 140 (180) T 1jeo_A 106 KNINNN-IIAIVXEXGNVVEF------A--D-LTIPLEVKKSKYL 140 (180) T ss_dssp HTTCSC-EEEEESSCCGGGGG------C--S-EEEECCCCCBTTB T ss_pred HHCCCC-EEEEECCCCCCHHH------C--C-EEEECCCCCCCCC T ss_conf 975997-99996999975666------7--7-8886366765567 No 67 >>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A* (A:) Probab=46.06 E-value=19 Score=16.02 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=32.5 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHH------CCCCHHHEECCCCCCCHHH Q ss_conf 87899946985799999999996899824515876546789999987651------5886133220466666025 Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIR------QDLAECCIDIGYKALNTEG 105 (207) Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~------~~i~~~~I~~e~~s~~T~e 105 (207) .++|||.|-.+-=+.+-++|.++|...+-++-|..-++-.+.-.|+.+.+ .++|.. .....+.-|+.- T Consensus 133 ~g~IvvIGNAPTAL~~Lleli~~g~~~PaLVIG~PVGFV~AaESKe~L~~~~~~~~s~iP~I-t~~GrkGGS~vA 206 (231) T 2afr_A 133 NESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYI-LTMGRKGGSTIA 206 (231) T ss_dssp TTCEEEESSCHHHHHHHHHHHHHHCCCCSEEEECCCCSSSHHHHHHHHHHHHHTTSCCCCEE-EECSSCCCHHHH T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEE-EEECCCCCHHHH T ss_conf 98689973782799999999975887534289768775367989999985212357899989-971698749999 No 68 >>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:189-390) Probab=45.97 E-value=19 Score=16.01 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=26.5 Q ss_pred EEEEECCCH--HHHHHHHHHHHHCCCCCEECCCC Q ss_conf 899946985--79999999999689982451587 Q gi|254780579|r 39 AIVVLTGEP--IRIERAFELLENQIGEKIFISGV 70 (207) Q Consensus 39 aIVVLgGg~--~Ri~~a~~L~~~g~~~~ii~SG~ 70 (207) .+.||||.. +.+.---.|++++.+..|++.|+ T Consensus 4 ~vaIlGGaKvsdKi~vl~~Ll~~~kvD~iiigG~ 37 (202) T 2cun_A 4 KIYVLGGAKVEDSLKVVENVLRRERADLVLTGGL 37 (202) T ss_dssp EEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHH T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC T ss_conf 5999745631016899998750024618997244 No 69 >>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:1-155) Probab=45.81 E-value=19 Score=16.00 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=34.0 Q ss_pred CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 61332204666660256999999998649981898511442199999999862998799964167666 Q gi|254780579|r 90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDL 157 (207) Q Consensus 90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~ 157 (207) +++.++.-..+..| .+.....+.++++|. +++.+|+.-+.+=+ +.+ |. .+..|..+... T Consensus 74 ~~dlvi~iS~sG~t-~~~~~~~~~a~~~g~-~~I~iT~~~~s~l~----~~a--d~-~l~~~~~~~~~ 132 (155) T 3eua_A 74 EKSLVILCSHSGNT-PETVKAAAFARGKGA-LTIAXTFKPESPLA----QEA--QY-VAQYDWGDEAL 132 (155) T ss_dssp TTEEEEEEESSSCC-HHHHHHHHHHHHTTC-EEEEEESCTTSHHH----HHS--SE-EEECCCSTTCC T ss_pred CCCEEEEEECCCCC-HHHHHHHHHHHHCCC-EEEEECCCCCCCHH----HCC--CC-CCEECCCCCCC T ss_conf 99689998089998-679999986553022-13321276321112----124--54-40002364322 No 70 >>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405) Probab=45.78 E-value=19 Score=16.00 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=36.2 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCC Q ss_conf 899946985799999999996899824515876546----7899999876515886 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDLA 90 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i~ 90 (207) -|||.|||..=+..|.+|.+.+....+.+-.-.+.. .-.+.+.+.+.+.|+. T Consensus 23 ~vviiG~g~~g~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~GV~ 78 (199) T 2gag_B 23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGHDHVAWAFARKANEMGVD 78 (199) T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCE T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE T ss_conf 99998926999999999996698786999838998865999999999999867989 No 71 >>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:107-242) Probab=45.70 E-value=19 Score=15.99 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=60.2 Q ss_pred HHHH-HHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEC Q ss_conf 9999-999689982451587654678---999998765158861332204666660256999-99999864998189851 Q gi|254780579|r 52 RAFE-LLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQE-ASAWAEKNNFHHVLIVT 126 (207) Q Consensus 52 ~a~~-L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~-~~~~l~~~~~~~iiLVT 126 (207) .+++ |.++|+.+..+++|....... .+-+++.+.+.+..... ......++.+.+.. ..+++.++.--..++++ T Consensus 11 ~~~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 88 (136) T 3ksm_A 11 ALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRII--AAPYAGDDRGAARSEXLRLLKETPTIDGLFTP 88 (136) T ss_dssp HHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEE--ECCBCCSSHHHHHHHHHHHHHHCSCCCEEECC T ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE--EEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEC T ss_conf 9998732279847999537677640778987799999867986420--21101022588999988764148876356625 Q ss_pred CHHHHHHHHHHHHHHC-C-CCEEEEEE Q ss_conf 1442199999999862-9-98799964 Q gi|254780579|r 127 HDYHMPRTFLELQRIN-S-TVQFIPYP 151 (207) Q Consensus 127 s~yHm~RA~~~f~~~~-p-~i~i~~~p 151 (207) ++.....+...+++.. | ++.++.+- T Consensus 89 ~d~~a~g~~~al~~~g~p~di~v~g~d 115 (136) T 3ksm_A 89 NESTTIGALVAIRQSGXSKQFGFIGFD 115 (136) T ss_dssp SHHHHHHHHHHHHHTTCTTSSEEEEES T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 719999999999975999992899878 No 72 >>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} (A:) Probab=45.13 E-value=20 Score=15.93 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=35.7 Q ss_pred CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 613322046666602569999999986499818985114421999999998629987999641676667 Q gi|254780579|r 90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLE 158 (207) Q Consensus 90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~ 158 (207) +++.+++-..+..|.+ .....+.++++|. +++++|+..+.+=+ +.+ +. ++.+|+...... T Consensus 92 ~~d~vI~iS~sG~t~~-~~~~~~~ak~~g~-~vI~IT~~~~s~l~----~~a--d~-~i~~~~~~~~~~ 151 (201) T 3fxa_A 92 KEDILILISKGGNTGE-LLNLIPACKTKGS-TLIGVTENPDSVIA----KEA--DI-FFPVSVSKEPDP 151 (201) T ss_dssp TTCEEEEECSSSCCHH-HHTTHHHHHHHTC-EEEEEESCTTSHHH----HHC--SE-EEECCCSCCCST T ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHHCCC-CEEEEECCCCCCCC----CCC--CE-EEECCCCHHHCC T ss_conf 8888999679998268-9999999998399-18998369999642----357--86-686541022014 No 73 >>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254) Probab=45.01 E-value=20 Score=15.92 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=61.2 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH-HHHHHHHHCCCCEEEEECCH Q ss_conf 999999689982451587654678---99999876515886133220466666025699-99999986499818985114 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQ-EASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~-~~~~~l~~~~~~~iiLVTs~ 128 (207) +-.|+++|+....+++|....... .+.....+.+.+++......... ..+.++.. ....+++...-...++++++ T Consensus 10 ~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ai~~~~d 88 (133) T 3brq_A 10 VAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANG-KWTPASGAEGVEXLLERGAKFSALVASND 88 (133) T ss_dssp HHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC-CSSHHHHHHHHHHHHTC--CCSEEEESSH T ss_pred HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 45543403655999957755653033545999999863987772035326-76521056777999855899872235880 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 42199999999862---9-98799964 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207) .-...+...+++.. | ++.++.+- T Consensus 89 ~~a~~~~~~l~~~g~~vP~di~i~~~d 115 (133) T 3brq_A 89 DXAIGAXKALHERGVAVPEQVSVIGFD 115 (133) T ss_dssp HHHHHHHHHHHHHTCCTTTTCEEEEES T ss_pred HHHHHHEHHHHHCCCCCCCCCCCCCCC T ss_conf 888422443665498788640000556 No 74 >>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296) Probab=45.01 E-value=20 Score=15.92 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=62.4 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 999999689982451587654678---99999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|+++|+....+++|....... .+.....+.+.+++...........+..+-......+++...-...++++++. T Consensus 10 ~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~ 89 (133) T 3dbi_A 10 VAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVASNDD 89 (133) T ss_dssp HHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHH T ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHH T ss_conf 99999849985999978999866999999999999983999883147615764677999999998348886499967899 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 2199999999862---9-98799964 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~p 151 (207) -...+...+++.. | ++.++.+- T Consensus 90 ~a~~~~~~l~~~g~~vP~di~i~~~d 115 (133) T 3dbi_A 90 XAIGAXKALHERGVAVPEQVSVIGFD 115 (133) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEES T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEC T ss_conf 99999999997599989986999989 No 75 >>3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocarbons catabolism; HET: FAD; 1.80A {Pseudomonas putida} (A:1-107,A:243-312) Probab=44.40 E-value=19 Score=16.06 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=24.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 899946985799999999996899824515 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) -|||.|||.-=+..|.+|.+.++...|.+- T Consensus 4 ~VvIIGgG~aG~~~a~~l~r~~~~~~I~vi 33 (177) T 3ef6_A 4 HVAIIGNGVGGFTTAQALRAEGFEGRISLI 33 (177) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEE T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEE T ss_conf 889989889999999999806968838999 No 76 >>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:160-293) Probab=44.09 E-value=21 Score=15.84 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=65.2 Q ss_pred HHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 9999996899824515876546----789999987651588613322046666602569999999986499818985114 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) +-.|+++|+.+..+++|..... ...+-....+.+.++............+..........++...+....+++.++ T Consensus 10 ~~~L~~~G~r~i~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (134) T 2hsg_A 10 VQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTD 89 (134) T ss_dssp HHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEESSH T ss_pred HHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCC T ss_conf 64321368714799953643333102688999999998599988325884688778899999999834999857741785 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 42199999999862---9-9879996 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207) -.....+...++.. | ++.++.+ T Consensus 90 ~~a~~~~~~l~~~~~~iP~di~vigf 115 (134) T 2hsg_A 90 EMALGVIHGAQDRGLNVPNDLEIIGF 115 (134) T ss_dssp HHHHHHHHHHHHTTCCHHHHCEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE T ss_conf 88873238999729988898499997 No 77 >>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} (A:) Probab=43.61 E-value=21 Score=15.79 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=42.9 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHH--CCCCHHHEECCCCCCCHH Q ss_conf 687899946985799999999996899824515876546789999987651--588613322046666602 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIR--QDLAECCIDIGYKALNTE 104 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~--~~i~~~~I~~e~~s~~T~ 104 (207) ..++|+|.|-.+-=+.+-++|.++|...+-++-|..-++-.+...|+.+.+ .++|.. +....+.-|+. T Consensus 137 ~~~~IvvIGNAPTAL~~l~eli~~g~~~PaLVIG~PVGFV~a~ESKe~L~~~~~~vP~I-~~~GrkGGS~v 206 (219) T 1f2v_A 137 LAGSVVAIGNAPTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESKDALAENSYGVPFA-IVRGRLGGSAM 206 (219) T ss_dssp HTTCEEEECSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEE-EECTTCCCHHH T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCEE-EEECCCCCHHH T ss_conf 79978999586899999999998248888779876977557399999998478999979-98259876999 No 78 >>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:340-475) Probab=43.54 E-value=21 Score=15.78 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=51.4 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEC-CCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHH Q ss_conf 4568789994698579999999999689982451-587654678999998765158861332204666660256999999 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFI-SGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASA 112 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~-SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~ 112 (207) .-++++|||++-+.. .|..+.+.-+..+|+. | ......+......|+.. .+-....++.+-..++.+ T Consensus 32 ~l~a~aIiv~T~sG~---ta~~lS~~RP~~pI~a~t------~~~~~~r~l~l~~GV~p---~~~~~~~~~~~~~~~~~~ 99 (136) T 2e28_A 32 NLDVAAIVTPTVSGK---TPQMVAKYRPKAPIIAVT------SNEAVSRRLALVWGVYT---KEAPHVNTTDEMLDVAVD 99 (136) T ss_dssp HTTCSEEEEECSSSH---HHHHHHHTCCSSCEEEEE------SSHHHHHHGGGSTTEEE---EECCCCCSHHHHHHHHHH T ss_pred HCCCCEEEEECCCCC---HHHHHHHHCCCCCEEEEC------CCHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHH T ss_conf 579999999899876---889998549899899986------98899997445368033---336766898999999999 Q ss_pred HHHHCCC---CEEEEECCH Q ss_conf 9986499---818985114 Q gi|254780579|r 113 WAEKNNF---HHVLIVTHD 128 (207) Q Consensus 113 ~l~~~~~---~~iiLVTs~ 128 (207) +++++|+ ...++||+. T Consensus 100 ~l~~~g~~~~gD~vVv~~g 118 (136) T 2e28_A 100 AAVRSGLVKHGDLVVITAG 118 (136) T ss_dssp HHHHHTCCCTTCEEEEEEC T ss_pred HHHHCCCCCCCCEEEEEEC T ss_conf 9998599899398999822 No 79 >>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} (P:1-106,P:243-313) Probab=42.99 E-value=21 Score=15.73 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=26.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 8999469857999999999968998245158 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) -|||+|||.-=+..|.+|.+.+....|+..+ T Consensus 3 ~VvIIGgG~aGl~aA~~l~~~g~~~~i~~~~ 33 (177) T 3fg2_P 3 TVLIAGAGHAGFQVAVSLRQAKYPGRIALIN 33 (177) T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCSCEEEEC T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 9999898799999999998059578199996 No 80 >>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I (A:1-43,A:166-287) Probab=42.71 E-value=19 Score=15.99 Aligned_cols=28 Identities=21% Similarity=0.130 Sum_probs=14.8 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 66025699999999864998189851144 Q gi|254780579|r 101 LNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 101 ~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +.|.+++.++.+.+++.|++ +.++|.+. T Consensus 40 ~~~~~da~e~I~~Lr~~Gi~-v~ilTGD~ 67 (165) T 3a1c_A 40 TGTLESAKPAVQELKRMGIK-VGMITGDN 67 (165) T ss_dssp CCCCTTHHHHHHHHHHTTCE-EEEECSSC T ss_pred CCCCCCHHHHHHHHHHCCCC-EEEECCCC T ss_conf 83131599999999876997-89975897 No 81 >>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} (A:) Probab=41.81 E-value=22 Score=15.62 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=25.1 Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH Q ss_conf 789994698579999999999689982451587654678999998765158861 Q gi|254780579|r 38 SAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE 91 (207) Q Consensus 38 DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~ 91 (207) ++|+|.|-.+-=+.+-++|.++|..|-+++. ..-++-.+.-.++.+.+.++|. T Consensus 128 ~~I~vIGNAPTAL~~l~eli~~g~~PalVIg-~PVGFV~A~ESKe~L~~~~iP~ 180 (218) T 1v9c_A 128 GAIVGVGNAPTFLLALVEAIRQGARPALVLG-MPVGFVNVLEAKRALMEAPVPW 180 (218) T ss_dssp SCEEEESSCTTTTHHHHHHHHTTCCCSEEEE-CCCSSSSHHHHHHHHTTSSSCE T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHCCCCE T ss_conf 8579966716899999999855998608997-2876557599999998589998 No 82 >>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} (C:1-143,C:303-333) Probab=41.41 E-value=23 Score=15.58 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=33.6 Q ss_pred EEEEECCCHHHHHHHHH-HHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCC Q ss_conf 89994698579999999-9996899824515876546789999987651588613322046666 Q gi|254780579|r 39 AIVVLTGEPIRIERAFE-LLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKAL 101 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~-L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~ 101 (207) -||+--|..+|+.+|+. +.++|.+..|++.- .+..+..+...|+....|+-...+. T Consensus 18 rIvf~Eg~D~rvl~AA~~~~~~gia~pILvG~-------~~~I~~~a~~~~l~~~eiid~~~~~ 74 (174) T 2af4_C 18 TIALPETEDIRTLQAAAKILERGIADIVLVGN-------EADIKALAGDLDLSKAKIVDPKTYE 74 (174) T ss_dssp EEEECCTTSHHHHHHHHHHHHHTSCEEEEESC-------HHHHHHHHSSCCCTTSEEECTTSCT T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEEECC-------HHHHHHHHHHCCCCCCEEECCCCCH T ss_conf 89986879979999999999869916999879-------9999999985899867787887541 No 83 >>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:) Probab=40.88 E-value=23 Score=15.53 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=46.6 Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC--------------HHHEECCCCCCCHHHHHHHHHHH Q ss_conf 7999999999968998245158765467899999876515886--------------13322046666602569999999 Q gi|254780579|r 48 IRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA--------------ECCIDIGYKALNTEGNAQEASAW 113 (207) Q Consensus 48 ~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~--------------~~~I~~e~~s~~T~ena~~~~~~ 113 (207) +.++..+++.++ +++|++.|.+....-++.+...+...|.+ +++++.-..+..| .+.....+. T Consensus 25 ~~~~~i~~~i~~--a~~I~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~vI~iS~sG~t-~~~~~~~~~ 101 (186) T 1m3s_A 25 EEADQLADHILS--SHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGET-KSLIHTAAK 101 (186) T ss_dssp HHHHHHHHHHHH--CSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCC-HHHHHHHHH T ss_pred HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEEEECCCCC-HHHHHHHHH T ss_conf 999999999974--99599997878999999999999850998677772113568899889998189986-467899999 Q ss_pred HHHCCCCEEEEECCHHHHHHH Q ss_conf 986499818985114421999 Q gi|254780579|r 114 AEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 114 l~~~~~~~iiLVTs~yHm~RA 134 (207) ++++|. .++.+|+..+.+=+ T Consensus 102 ak~~g~-~ii~IT~~~~s~l~ 121 (186) T 1m3s_A 102 AKSLHG-IVAALTINPESSIG 121 (186) T ss_dssp HHHTTC-EEEEEESCTTSHHH T ss_pred HHHCCC-EEEEEECCCCCHHH T ss_conf 998699-69999899999789 No 84 >>3lm7_A Putative 4-hydroxy-2-oxoglutarate aldolase / 2- dehydro-3-deoxyphosphogluconate aldolase...; structural genomics, PSI-2; 1.90A {Yersinia enterocolitica} (A:) Probab=40.67 E-value=23 Score=15.51 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=35.8 Q ss_pred HHHHHHHHHHH--CCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 99999999996--899824515876546789999987651588613322046666602569999999986499818 Q gi|254780579|r 49 RIERAFELLEN--QIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHV 122 (207) Q Consensus 49 Ri~~a~~L~~~--g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~i 122 (207) .++.|+.|.+. +.+-+.+--|+-....|-..+...+.+.| +.+|+..-=..+|.....+.+.+.|++++ T Consensus 146 ~v~tAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g-----~~lEPTGGIdl~N~~~I~~i~ldaGv~kv 216 (249) T 3lm7_A 146 PVTTAIAXLKDXGGSSVKFFPXNGLDSIDEYRFVAEACAATG-----FWLEPTGGIDLDNFEQIVQIALDAGVTKV 216 (249) T ss_dssp EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTT-----CEEEECSSCCTTTHHHHHHHHHHHTCSCB T ss_pred CHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCC-----CEECCCCCCCHHHHHHHHHHHHHCCCCEE T ss_conf 399999999973987145633675224999999999999669-----35577788467779999999998499844 No 85 >>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292) Probab=40.41 E-value=23 Score=15.49 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=62.1 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCHH---HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCH Q ss_conf 9999996899824515876546789---999987651588613322046666602569999999-986499818985114 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSKD---ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW-AEKNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~~---~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~-l~~~~~~~iiLVTs~ 128 (207) +-.|+++|.....+++|........ .-+...+.+.+..-.... ......+.+++...... ++.......++++++ T Consensus 9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~ 87 (132) T 1qpz_A 9 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCGGD 87 (132) T ss_dssp HHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESSH T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHE-EEECCCCHHHHHHHHHHHHHCCCCCEEEEECCH T ss_conf 9999975998599982885553178999889999998599998221-895434266799999999817999808997770 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 42199999999862---9-98799964 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207) ......+...++.. | ++.++.+- T Consensus 88 ~~a~g~~~~l~~~g~~ip~di~i~~fd 114 (132) T 1qpz_A 88 IMAMGALCAADEMGLRVPQDVSLIGYD 114 (132) T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred HHHHHCCHHHHHCCCCCCCCEEEEEEC T ss_conf 998740226987399789875999878 No 86 >>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A* (A:424-550) Probab=39.90 E-value=24 Score=15.44 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=50.2 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCC-----CCCHHHHHHH Q ss_conf 56878999469857999999999968998245158765467899999876515886133220466-----6660256999 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYK-----ALNTEGNAQE 109 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~-----s~~T~ena~~ 109 (207) -++++|||++-.-. .+..+.+.-+..+|+.-. ......+......|+.. +.++.. ..++.+...+ T Consensus 19 l~akaIvv~T~tG~---ta~~iS~~RP~~pIia~t-----~~~~~~r~l~l~~GV~p--~~~~~~~~~~~~~~~~~~i~~ 88 (127) T 3gr4_A 19 CCSGAIIVLTKSGR---SAHQVARYRPRAPIIAVT-----RNPQTARQAHLYRGIFP--VLCKDPVQEAWAEDVDLRVNF 88 (127) T ss_dssp TTCSCEEEECSSSH---HHHHHHTTCCSSCEEEEE-----SCHHHHHHGGGSTTEEE--EECCSCCCSSHHHHHHHHHHH T ss_pred CCCCEEEEECCCHH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHHHCCCEE--EEECCCCCCCCCCCHHHHHHH T ss_conf 79998999889769---999999659599889986-----98899988772079189--995675421111079999999 Q ss_pred HHHHHHHCCC---CEEEEECCHH Q ss_conf 9999986499---8189851144 Q gi|254780579|r 110 ASAWAEKNNF---HHVLIVTHDY 129 (207) Q Consensus 110 ~~~~l~~~~~---~~iiLVTs~y 129 (207) ..++++++|+ ...++|++.. T Consensus 89 ~~~~l~~~g~~~~GD~vVvv~g~ 111 (127) T 3gr4_A 89 AMNVGKARGFFKKGDVVIVLTGW 111 (127) T ss_dssp HHHHHHHTTSCCTTCEEEEEEES T ss_pred HHHHHHHCCCCCCCCEEEEEECC T ss_conf 99999986999996989998078 No 87 >>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} (A:) Probab=39.82 E-value=24 Score=15.43 Aligned_cols=111 Identities=11% Similarity=-0.084 Sum_probs=52.7 Q ss_pred CCCCEEEEECCCHH-HHHH--HHHHHHHCCCCCEE-----CCCCCCC--------CCHHHHHHHHHHHCCCCHHHEECCC Q ss_conf 56878999469857-9999--99999968998245-----1587654--------6789999987651588613322046 Q gi|254780579|r 35 PSVSAIVVLTGEPI-RIER--AFELLENQIGEKIF-----ISGVHHS--------VSKDILLQKIPIRQDLAECCIDIGY 98 (207) Q Consensus 35 ~~~DaIVVLgGg~~-Ri~~--a~~L~~~g~~~~ii-----~SG~~~~--------~~~~~~~~~~~~~~~i~~~~I~~e~ 98 (207) .+++-|.+.|-|.. .+.. +..|.+-|.....+ .+|.... ............ ..-+++.++.-. T Consensus 40 ~~~~rI~~~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dlvI~~S 118 (188) T 1tk9_A 40 KKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEA-LGNEKDVLIGIS 118 (188) T ss_dssp HTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHH-HCCTTCEEEEEC T ss_pred HCCCEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCEEEEEE T ss_conf 8599899991688743443314340687655544332225678744332122557999999999998-379999899981 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 666602569999999986499818985114421999999998629987999641676 Q gi|254780579|r 99 KALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 99 ~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) .+..| .+...+.++++++|. .++.+|+.-+.+=+ +.+ |+ ++.+|+.++ T Consensus 119 ~sG~t-~~~~~~~~~ak~~g~-~vI~IT~~~~s~l~----~~a--d~-~i~~~~~~e 166 (188) T 1tk9_A 119 TSGKS-PNVLEALKKAKELNX-LCLGLSGKGGGXXN----KLC--DH-NLVVPSDDT 166 (188) T ss_dssp SSSCC-HHHHHHHHHHHHTTC-EEEEEEEGGGTTHH----HHC--SE-EEEESCSCH T ss_pred CCCCC-CCHHHHHHHHHHEEE-EEEEECCCCCHHHH----HHC--CE-EEEECCCCC T ss_conf 89888-315765677774241-48998378852679----859--99-999799995 No 88 >>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:117-249) Probab=39.78 E-value=24 Score=15.42 Aligned_cols=100 Identities=9% Similarity=0.005 Sum_probs=63.8 Q ss_pred HHHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 99999996899824515876546----78999998765158861332204666660256999999998649981898511 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH 127 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs 127 (207) .+-.|+++|+....+++|..... ....-.++.+.+.++............+..........++...+....+++++ T Consensus 8 a~~~L~~~G~r~i~~i~~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (133) T 2fep_A 8 AVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSAT 87 (133) T ss_dssp HHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEESS T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECC T ss_conf 99999862994367860576655310001368899999718998710588446434320667899983699996799778 Q ss_pred HHHHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 442199999999862---9-98799964 Q gi|254780579|r 128 DYHMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 128 ~yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207) +.-...++..+++.. | ++.++.+- T Consensus 88 d~~a~~~~~~l~~~~~~vP~di~iigfd 115 (133) T 2fep_A 88 DEMALGIIHAAQDQGLSIPEDLDIIGFD 115 (133) T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECC T ss_conf 9999999999998499988415897417 No 89 >>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} (A:) Probab=38.73 E-value=25 Score=15.32 Aligned_cols=56 Identities=5% Similarity=0.025 Sum_probs=35.6 Q ss_pred CCCCCHHHHHHHHHHHCCCCHHH--------EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 65467899999876515886133--------22046666602569999999986499818985114 Q gi|254780579|r 71 HHSVSKDILLQKIPIRQDLAECC--------IDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~~~~--------I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) ......++.+..-+...|++... +.+ ..-+|.++|...++-+++.+++..++++++ T Consensus 17 f~~~~~A~~~~~~L~~~g~~~~i~~~~~~yrV~i--Gp~~~~~~A~~~~~~lk~~~~~~~~i~~~~ 80 (81) T 1uta_A 17 FRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVI--GPVKGKENADSTLNRLKMAGHTNCIRLAAG 80 (81) T ss_dssp ESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEE--SSCBTTTHHHHHHHHHHHHCCSCCBCCCCC T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEE--CCCCCHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 6676668999999997799548950795999998--773999999999999998799877996379 No 90 >>1a3w_A Pyruvate kinase; allosteric regulation, tranferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} (A:361-500) Probab=38.65 E-value=25 Score=15.32 Aligned_cols=85 Identities=8% Similarity=-0.009 Sum_probs=51.2 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE---CCCCCCCHHHHHHHHH Q ss_conf 5687899946985799999999996899824515876546789999987651588613322---0466666025699999 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID---IGYKALNTEGNAQEAS 111 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~---~e~~s~~T~ena~~~~ 111 (207) -++++|||++-... .|..+.+.-+..+|+.-- .....++......|+....+. .++...++.+-...+. T Consensus 33 l~a~aIvv~T~sG~---ta~~iSk~RP~~pI~a~t-----~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~ 104 (140) T 1a3w_A 33 QKAKAIIVLSTSGT---TPRLVSKYRPNCPIILVT-----RCPRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGI 104 (140) T ss_dssp HTCSCEEEECSSSH---HHHHHHHTCCSSCEEEEE-----SCTTHHHHGGGSTTEEEEECCSCCCSCTTTHHHHHHHHHH T ss_pred CCCCEEEEECCCHH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHEECCEEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 79988999879719---999999669799999987-----9889997521306749999546677750565999999999 Q ss_pred HHHHHCCC----CEEEEECC Q ss_conf 99986499----81898511 Q gi|254780579|r 112 AWAEKNNF----HHVLIVTH 127 (207) Q Consensus 112 ~~l~~~~~----~~iiLVTs 127 (207) ++++++|+ +.+++++. T Consensus 105 ~~l~~~g~~~~gd~vv~~~g 124 (140) T 1a3w_A 105 EKAKEFGILKKGDTYVSIQG 124 (140) T ss_dssp HHHHHTTCSCTTCEEEEEEC T ss_pred HHHHHCCCCCCCCEEEEEEC T ss_conf 99997699999798999837 No 91 >>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} (A:153-264) Probab=38.44 E-value=25 Score=15.30 Aligned_cols=56 Identities=9% Similarity=0.019 Sum_probs=40.2 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC--C--CCHHHHHHHHHHHCCC Q ss_conf 456878999469857999999999968998245158765--4--6789999987651588 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH--S--VSKDILLQKIPIRQDL 89 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~--~--~~~~~~~~~~~~~~~i 89 (207) .....-++|.|||.--++.|..|.++|..-.|+-.+... . ....+.+...+.+.|+ T Consensus 16 ~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~i~~~~~~~~~~~~~~~l~~~gV 75 (112) T 1lvl_A 16 KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI 75 (112) T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCE T ss_conf 125995999998899999999999759979999837844431005665420010001214 No 92 >>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.6A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A (A:) Probab=37.98 E-value=26 Score=15.25 Aligned_cols=12 Identities=17% Similarity=-0.000 Sum_probs=5.3 Q ss_pred CCCHHHHHHHHH Q ss_conf 666025699999 Q gi|254780579|r 100 ALNTEGNAQEAS 111 (207) Q Consensus 100 s~~T~ena~~~~ 111 (207) .--|.+++.++. T Consensus 117 ~~GTl~e~~~a~ 128 (176) T 2iz6_A 117 GPGTAAEVALAL 128 (176) T ss_dssp CHHHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 767099999999 No 93 >>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} (A:1-104,A:282-327) Probab=37.95 E-value=26 Score=15.25 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=27.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 8999469857999999999968998245158 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) -|||+|||..=+..|.+|.+.|+...|+.-. T Consensus 4 ~VvIIGaG~AGl~aA~~L~~~g~~v~I~e~~ 34 (150) T 1fcd_A 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIE 34 (150) T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEEC T ss_pred CEEEECCHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 8999996199999999997009399689991 No 94 >>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodanese, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* (A:1-148,A:284-356) Probab=37.84 E-value=26 Score=15.24 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=29.0 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC Q ss_conf 568789994698579999999999689982451587 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGV 70 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~ 70 (207) ....-|||+|||.-=+..|..|.+.+....|++-.- T Consensus 34 ~~~k~VVIVGgG~aG~~~A~~l~r~~~~~~I~li~~ 69 (221) T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIXVER 69 (221) T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECS T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 899859998988999999999981798882899938 No 95 >>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} (A:) Probab=37.67 E-value=26 Score=15.22 Aligned_cols=62 Identities=10% Similarity=0.006 Sum_probs=42.6 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-CCHHHHHHHHHHHCCCCHHHEE Q ss_conf 4568789994698579999999999689982451587654-6789999987651588613322 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-VSKDILLQKIPIRQDLAECCID 95 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-~~~~~~~~~~~~~~~i~~~~I~ 95 (207) .+..+++|.|+||.+=...+.-+.+.+.....+..+.+.. ....+.++..+...|++-..|. T Consensus 27 ~~~~kv~V~lSGG~DS~~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~ 89 (249) T 3fiu_A 27 YPAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQDALELIEMLNIEHYTIS 89 (249) T ss_dssp TTCSEEEEECCSSHHHHHHHHHHHHTTSCEEEEECCCTTSCHHHHHHHHHHHHHHTCEEEECC T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 399839997779989999999999829863210025664047789999999862454431145 No 96 >>3dme_A Conserved exported protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} (A:1-42,A:149-222,A:325-369) Probab=37.14 E-value=26 Score=15.17 Aligned_cols=51 Identities=10% Similarity=-0.028 Sum_probs=35.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH---HHHHHHHCCC Q ss_conf 89994698579999999999689982451587654678999---9987651588 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDIL---LQKIPIRQDL 89 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~---~~~~~~~~~i 89 (207) -+||.|||.-=+..|.+|.+.|....++=.+........++ ..+.+.+.|+ T Consensus 6 ~~~viG~g~~g~~~a~~~~~~g~~v~~~e~~~~~~~~D~ei~~~l~~~l~~~GI 59 (161) T 3dme_A 6 DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGSHALMLAYQGDAESDGA 59 (161) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSHHHHHHHHHHHHHHTTC T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEHHHHHHHHHHHHHCHH T ss_conf 599999209999999999978995899978999866230111222100000001 No 97 >>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} (A:1-146,A:319-398) Probab=36.58 E-value=27 Score=15.12 Aligned_cols=68 Identities=13% Similarity=-0.029 Sum_probs=32.6 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH Q ss_conf 22046666602569999999986499818985114421999999998629987999641676667542116989999999 Q gi|254780579|r 94 IDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLL 173 (207) Q Consensus 94 I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~ 173 (207) |++|+--..|.+++.+..+..+++|. .+-|+..|-.-| .|... ++.| .+.|.+++ T Consensus 112 VicEKPla~s~~ea~eL~~~a~~~g~--~~~v~~~~R~~~----------------~p~gH----~eg~---~~af~n~y 166 (226) T 3dty_A 112 VVCEKPLCFTVEQAENLRELSHKHNR--IVGVTYGYADDR----------------IGGGH----PEGL---FEAWANLY 166 (226) T ss_dssp EEECSCSCSCHHHHHHHHHHHHHTTC--CEEECCGGGTCC----------------SCTTS----CCCH---HHHHHHHH T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCC--EEEEEEECCCCC----------------CCCCC----CCCH---HHHHHHHH T ss_conf 67437732557788999998742697--699974210210----------------37888----6406---78899999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999987 Q gi|254780579|r 174 IEYLKILLLSIQL 186 (207) Q Consensus 174 ~Ey~K~l~~~lr~ 186 (207) .+...-+..+.++ T Consensus 167 ~~~~~~i~~~~~~ 179 (226) T 3dty_A 167 YRFALAXDATDRS 179 (226) T ss_dssp HHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCC T ss_conf 9999999844516 No 98 >>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* (A:1-43,A:164-239,A:321-474) Probab=36.51 E-value=27 Score=15.11 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=38.0 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH---CCCCCEECCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 687899946985799999999996---8998245158765467899999876515886 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLEN---QIGEKIFISGVHHSVSKDILLQKIPIRQDLA 90 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~---g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~ 90 (207) +..-|||-|||.-=++.|..|.+. +..-.++-.+......-++.+++.+.+.|+. T Consensus 4 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~le~~GV~ 61 (273) T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPAHLVADFLKRWAVERGVN 61 (273) T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCHHHHHHHHHHHHHHTTCE T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC T ss_conf 8656999898799999999999860899979999689999998756755221003455 No 99 >>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} (A:123-237) Probab=36.50 E-value=27 Score=15.11 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=41.8 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC----CCCHHHHHHHHHHHCCCC Q ss_conf 56878999469857999999999968998245158765----467899999876515886 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH----SVSKDILLQKIPIRQDLA 90 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~----~~~~~~~~~~~~~~~~i~ 90 (207) ....-|+|.|||.-=++.|..|.+.|..-.++..+... ...-.+.+.+.+.+.|+. T Consensus 24 ~~~~~i~IiGgG~~g~e~A~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~l~~~gI~ 83 (115) T 1yqz_A 24 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIP 83 (115) T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCC T ss_pred CCCCEEEEEEEEEECCCCCCCEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCEEE T ss_conf 455505786311000122211000323210011000223320134555554211234069 No 100 >>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} (A:) Probab=36.40 E-value=27 Score=15.10 Aligned_cols=101 Identities=8% Similarity=-0.001 Sum_probs=58.5 Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 79999999999689982451587654678999998765158861332204666660256999999998649981898511 Q gi|254780579|r 48 IRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH 127 (207) Q Consensus 48 ~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs 127 (207) .++..-++.+++...+.+...-..+..........+..........+.+.+...|.+.+... .++++++++++++++=- T Consensus 31 ~~i~~l~~~ar~~~~pv~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~v~~k~~~s~f~~t~L-~~~L~~~~i~~iii~G~ 109 (167) T 2a67_A 31 DKVNQRIAVYRQHHAPIIFVQHEETELPFGSDSWQLFEKLDTQPTDFFIRKTHANAFYQTNL-NDLLTEQAVQTLEIAGV 109 (167) T ss_dssp HHHHHHHHHHHHTTCCEEEEEECBTTBCTTSTTTSBCTTSCCCTTSEEEEESSSSTTTTSSH-HHHHHHTTCCEEEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCH-HHHHHHCCCCEEEEECC T ss_conf 99999999999849973887326666788886543373127999858997053245667748-99998579728999275 Q ss_pred HHHHHH--HHHHHHHHCCCCEEEEEE Q ss_conf 442199--999999862998799964 Q gi|254780579|r 128 DYHMPR--TFLELQRINSTVQFIPYP 151 (207) Q Consensus 128 ~yHm~R--A~~~f~~~~p~i~i~~~p 151 (207) ..|.== .-+..... |.+++... T Consensus 110 ~t~~CV~~Ta~~a~~~--G~~v~vi~ 133 (167) T 2a67_A 110 QTEFCVDTTIRXAHGL--GYTCLXTP 133 (167) T ss_dssp CTTTHHHHHHHHHHHH--TCEEEECT T ss_pred CCCHHHHHHHHHHHHC--CCEEEEEC T ss_conf 2148999999999988--99899953 No 101 >>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} (A:128-256) Probab=36.38 E-value=27 Score=15.10 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=60.4 Q ss_pred HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 99999968998245158765467---899999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|.++|+.+..+++|..+... ....+++.+.+.+++....... .+..+.......++........++++++. T Consensus 9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~aii~~~d~ 85 (129) T 3huu_A 9 TQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIK---SMNDLRDFIKQYCIDASHMPSVIITSDVM 85 (129) T ss_dssp HHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEEC---SHHHHHHHC--------CCCSEEEESSHH T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE---CCCHHHHHHHHHHHHCCCCCCEEECCCHH T ss_conf 999987098765556799766079999999999999859996506751---34215668999999579998633138889 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 2199999999862---9-9879996 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~ 150 (207) =..+.+..+++.. | ++.++.+ T Consensus 86 ~a~~~~~~l~~~~~~ip~di~ivgf 110 (129) T 3huu_A 86 LNMQLLNVLYEYQLRIPEDIQTATF 110 (129) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEE T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 9999999999759987860699833 No 102 >>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:1-139,A:277-286) Probab=36.03 E-value=27 Score=15.06 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=26.0 Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC Q ss_conf 54568789994698579999999999689982451587 Q gi|254780579|r 33 DHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGV 70 (207) Q Consensus 33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~ 70 (207) ....+|.|||+|| -+-+..|+.++.....|.+-+.-| T Consensus 72 ~~~~~Dlvi~lGG-DGT~L~a~~~~~~~~~PilgIn~G 108 (149) T 1u0t_A 72 AADGCELVLVLGG-DGTFLRAAELARNASIPVLGVNLG 108 (149) T ss_dssp ----CCCEEEEEC-HHHHHHHHHHHHHHTCCEEEEECS T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHCCCCCCEEEECCC T ss_conf 4456558999758-778999999750358837985788 No 103 >>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} (A:1-133,A:305-362) Probab=35.96 E-value=28 Score=15.06 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=50.6 Q ss_pred CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--HHHHHCCCCEEEEEEC Q ss_conf 78999998765158861332204666660256999999998649981898511442199999--9998629987999641 Q gi|254780579|r 75 SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFL--ELQRINSTVQFIPYPI 152 (207) Q Consensus 75 ~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~--~f~~~~p~i~i~~~pv 152 (207) ...+++.. +.+.|. .+++|.-...|.+++....+..+++|. .+.+-+...|-.-|+| +|.+...++ T Consensus 83 ~H~~~a~~-al~~Gk---hVl~EKPla~s~~e~~eL~~~a~~~gv-~~~v~~~~r~~~~~~~~~~~~~~~~~~------- 150 (191) T 1ydw_A 83 LHVEWAIK-AAEKGK---HILLEKPVAXNVTEFDKIVDACEANGV-QIXDGTXWVHPQEACXVREFARLVGEI------- 150 (191) T ss_dssp GHHHHHHH-HHTTTC---EEEECSSCSSSHHHHHHHHHHHHTTTC-CEEECCCGGGCHHHHHHHHHTTCC---------- T ss_pred CCCCCCCC-CCCCCH---HEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHH------- T ss_conf 44432222-344330---000033421003677889987631343-321112232017799999999999988------- Q ss_pred CCCCCCCCCCCCC Q ss_conf 6766675421169 Q gi|254780579|r 153 ISHDLEENSSIFK 165 (207) Q Consensus 153 ~~~~~~~~~Ww~~ 165 (207) ....-++++-|.. T Consensus 151 ~~~~~~~~~~~~~ 163 (191) T 1ydw_A 151 KNNGAKPDGYWPS 163 (191) T ss_dssp ---------CHHH T ss_pred HHCCCCCCCCCHH T ss_conf 7279888888999 No 104 >>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:122-251) Probab=35.92 E-value=28 Score=15.05 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=59.8 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 999999689982451587654678---99999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|+++|.....+++|....... ..-.+..+.+.+.....+.. ...+..+.......+.....-...++++++. T Consensus 9 ~~~L~~~G~~~i~~i~~~~~~~~~~~r~~gf~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (130) T 2iks_A 9 AEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYA--NSYEREAAAQLFEKWLETHPXPQALFTTSFA 86 (130) T ss_dssp HHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEE--SSSCHHHHHHHHHHHTTTSCCCSEEEESSHH T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 10122202333222345555443100125555555522343221223--3213677778887777632685044310157 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEE Q ss_conf 2199999999862---9-9879996 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~ 150 (207) .+..+...++... | ++.++.+ T Consensus 87 ~a~~~~~~~~~~~~~vP~di~vigf 111 (130) T 2iks_A 87 LLQGVXDVTLRRDGKLPSDLAIATF 111 (130) T ss_dssp HHHHHHHHHHHHHSSCCSSCEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 7766666654100257751578721 No 105 >>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum str} (A:17-160) Probab=35.86 E-value=28 Score=15.05 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=20.0 Q ss_pred HEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 322046666602569999999986499818985114421 Q gi|254780579|r 93 CIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM 131 (207) Q Consensus 93 ~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm 131 (207) .++.-..+..| .+.....+.++++|.+ ++.+|++.-+ T Consensus 66 vvI~iS~sg~~-~~~~~~~~~ak~~g~~-ii~iT~~s~l 102 (144) T 1tzb_A 66 LLIAVSYSGNT-IETLYTVEYAKRRRIP-AVAITTGGRL 102 (144) T ss_dssp EEEEECSSSCC-HHHHHHHHHHHHTTCC-EEEEESSTTG T ss_pred EEEEECCCCCC-HHHHHHHHHHHHCCCE-EECCCCCCHH T ss_conf 89998489587-8899999999751870-4206899859 No 106 >>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231) Probab=35.57 E-value=28 Score=15.02 Aligned_cols=94 Identities=9% Similarity=0.016 Sum_probs=59.8 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCH Q ss_conf 999999689982451587654678---999998765158861332204666660256999999998-6499818985114 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAE-KNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~-~~~~~~iiLVTs~ 128 (207) +-.|.++|..+..+++|....... ..-.+..+.+.+++...+.. ..++.+........+. .......++++++ T Consensus 9 ~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~aii~~~d 85 (130) T 3cs3_A 9 IEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQG---DFTEPSGYAAAKKILSQPQTEPVDVFAFND 85 (130) T ss_dssp HHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---CSSHHHHHHHHHHHTTSCCCSSEEEEESSH T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHCCCCCCEEEEECHH T ss_conf 32101222345433457866623343226899999984997413412---452677888777764136898627875224 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEE Q ss_conf 42199999999862---9-987999 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIP 149 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~ 149 (207) ...-..+..+++.. | ++.++. T Consensus 86 ~~a~~~l~~l~~~g~~vP~di~vv~ 110 (130) T 3cs3_A 86 EMAIGVYKYVAETNYQMGKDIRIIG 110 (130) T ss_dssp HHHHHHHHHHTTSSCCBTTTEEEEC T ss_pred HHCCCCCCCCCCCCCCCCCCEECCC T ss_conf 5404530024233445784120345 No 107 >>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* (A:137-268) Probab=35.06 E-value=28 Score=14.97 Aligned_cols=106 Identities=8% Similarity=-0.114 Sum_probs=57.2 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH Q ss_conf 45687899946985799999999996899824515876546789999987651588613322046666602569999999 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW 113 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~ 113 (207) .++.|.++|.||+..=-..++++.+..-...+.+++..+ ..+.+.+.|... .+..+.. +.....++. T Consensus 2 v~~G~~Vli~ga~g~vG~~~iqlak~~g~~vi~~~~~~~-------~~~~~~~~ga~~---~i~~~~~---~~~~~i~~~ 68 (132) T 3jyn_A 2 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE-------KAAHAKALGAWE---TIDYSHE---DVAKRVLEL 68 (132) T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH-------HHHHHHHHTCSE---EEETTTS---CHHHHHHHH T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHH-------HHHHHHHCCCCE---EEECCCC---CHHHHHHHH T ss_conf 799899999899509999999999986998999938778-------899999759989---9979998---899999997 Q ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 986499818985114421999999998629987999641676 Q gi|254780579|r 114 AEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 114 l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) ....+.+-++-.+..-++..+....++ +=.++.+...+. T Consensus 69 ~~~~~~d~v~d~~g~~~~~~~~~~l~~---~G~i~~~g~~~~ 107 (132) T 3jyn_A 69 TDGKKCPVVYDGVGQDTWLTSLDSVAP---RGLVVSFGNASG 107 (132) T ss_dssp TTTCCEEEEEESSCGGGHHHHHTTEEE---EEEEEECCCTTC T ss_pred HCCCCCCEEEECCCHHHHHHHHHHHCC---CCEEEEECCCCC T ss_conf 189995389989788999999998738---978999836678 No 108 >>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} (A:1-163) Probab=35.02 E-value=28 Score=14.96 Aligned_cols=109 Identities=10% Similarity=0.040 Sum_probs=68.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 99946985799999999996899824515876546789999987651588613322046666602569999999986499 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF 119 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~ 119 (207) -++.|-|. +.+-.+..++...+.++++|.+-.....+.....+...++. .+..+.....|.+++....+.+++.+. T Consensus 12 ~i~~G~g~--~~~l~~~l~~~g~r~livtd~~~~~~~~~~v~~~l~~~~~~--~~~~~~~~~~t~~~v~~~~~~~~~~~~ 87 (163) T 1jq5_A 12 KYVQGKNV--ITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIA--AEEVVFSGEASRNEVERIANIARKAEA 87 (163) T ss_dssp EEEEETTG--GGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCE--EEEEECCSSCBHHHHHHHHHHHHHTTC T ss_pred EEEECCCH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 08986499--99999999976993899989757899999999999877996--999984999999999999999874299 Q ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 81898511442199999999862998799964167 Q gi|254780579|r 120 HHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIIS 154 (207) Q Consensus 120 ~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~ 154 (207) ..++-|=..-=+=-|+..--.. +..++..|+.. T Consensus 88 d~iiaiGGGs~~D~aK~~~~~~--~~p~i~iPTt~ 120 (163) T 1jq5_A 88 AIVIGVGGGKTLDTAKAVADEL--DAYIVIVPTAA 120 (163) T ss_dssp SEEEEEESHHHHHHHHHHHHHH--TCEEEEEESSC T ss_pred CEEEEECCCCCCCCHHHHHHCC--CCCEEEEECCC T ss_conf 8899846860100201100204--79789970655 No 109 >>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} (A:1-104) Probab=34.53 E-value=29 Score=14.91 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC---HHHHHHHHHHHHHHCCCCEEEE Q ss_conf 256999999998649981898511---4421999999998629987999 Q gi|254780579|r 104 EGNAQEASAWAEKNNFHHVLIVTH---DYHMPRTFLELQRINSTVQFIP 149 (207) Q Consensus 104 ~ena~~~~~~l~~~~~~~iiLVTs---~yHm~RA~~~f~~~~p~i~i~~ 149 (207) .+......++++++++. ++++++ ...+....-.|++. |+.++| T Consensus 58 ~~~~~~l~~i~~~~~iD-~vip~~~~E~~~~a~~~~~~~~~--Gi~v~~ 103 (104) T 2pn1_A 58 VEYIDHLLTLCQDEGVT-ALLTLIDPELGLLAQATERFQAI--GVTVIV 103 (104) T ss_dssp TTHHHHHHHHHHHHTCC-EEEESSHHHHHHHHHTHHHHHTT--TCEECC T ss_pred HHHHHHHHHHHHHHCCC-EEEECCCCHHHHHHHHHHHHHHC--CCEEEC T ss_conf 77999999999985999-89404640026799986678765--980866 No 110 >>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} (A:194-372) Probab=33.90 E-value=24 Score=15.44 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=28.8 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH Q ss_conf 698579999999999689982451587654678999998765158861 Q gi|254780579|r 44 TGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE 91 (207) Q Consensus 44 gGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~ 91 (207) ..+.+.++.++++.++...|.|++.++.......+...++....|+|- T Consensus 4 ~p~~~~i~~~~~~L~~A~rPvIi~G~~~~~~~a~~~l~~lae~~giPv 51 (179) T 2c31_A 4 IPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPF 51 (179) T ss_dssp CCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999986168958999623113447899988787418651 No 111 >>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241) Probab=33.88 E-value=30 Score=14.85 Aligned_cols=98 Identities=11% Similarity=-0.070 Sum_probs=62.0 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCH Q ss_conf 999999689982451587654678---9999987651588613322046666602569999999-986499818985114 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW-AEKNNFHHVLIVTHD 128 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~-l~~~~~~~iiLVTs~ 128 (207) +-.|+++|.....+++|....... ..-+...+.+.+..-.... ......+.+++...... ++.......++++++ T Consensus 9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~ 87 (132) T 1dbq_A 9 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCGGD 87 (132) T ss_dssp HHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCH T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCH T ss_conf 9999865996699963763124789999766789998089977200-235767777789999999845999845885578 Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 42199999999862---9-98799964 Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207) ......+...++.. | ++.++.+- T Consensus 88 ~~a~g~~~~l~~~g~~ip~di~i~~fd 114 (132) T 1dbq_A 88 IMAMGALCAADEMGLRVPQDVSLIGYD 114 (132) T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEC T ss_conf 999999999998699999756999606 No 112 >>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} (P:117-237) Probab=33.01 E-value=31 Score=14.76 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=40.3 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC-----CCCHHHHHHHHHHHCCC Q ss_conf 56878999469857999999999968998245158765-----46789999987651588 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH-----SVSKDILLQKIPIRQDL 89 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~-----~~~~~~~~~~~~~~~~i 89 (207) +...-++|+|||.-=++.|..|.+.|....++..+... .......+.+.+.+.|+ T Consensus 24 ~~~~~v~ViGgG~~G~E~A~~l~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~~gv 83 (121) T 3fg2_P 24 PDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGI 83 (121) T ss_dssp GGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTC T ss_pred HCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 025631898032211115653203220477402367432112014556655555541684 No 113 >>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B (A:94-368) Probab=32.88 E-value=31 Score=14.75 Aligned_cols=97 Identities=8% Similarity=-0.025 Sum_probs=64.7 Q ss_pred CHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCC-------HHHHHHHHHHHHHHCC Q ss_conf 857999999999968998245158765467899999876515886133220466666-------0256999999998649 Q gi|254780579|r 46 EPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALN-------TEGNAQEASAWAEKNN 118 (207) Q Consensus 46 g~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~-------T~ena~~~~~~l~~~~ 118 (207) |..-+...+...++..+..+++.|.++...|.....+.....+..+..+++-..+.. .-.-+...++++.++| T Consensus 81 GKT~Ll~~ia~~~~~~~~~iv~~~iGer~~ev~e~~~~~~~~~~~~~t~iv~~t~d~~~~~r~~~~~~a~~~AEy~~~~G 160 (275) T 2qe7_A 81 GKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKG 160 (275) T ss_dssp CHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 77689999999763256633999625523429999998755287020466301789999999999988643655556459 Q ss_pred CCEEEEECCHHHHHHHHHHHHHHC Q ss_conf 981898511442199999999862 Q gi|254780579|r 119 FHHVLIVTHDYHMPRTFLELQRIN 142 (207) Q Consensus 119 ~~~iiLVTs~yHm~RA~~~f~~~~ 142 (207) -+-+++..|-...-||..+..... T Consensus 161 ~~Vlll~Ds~Tr~a~A~rei~~~~ 184 (275) T 2qe7_A 161 KHALVVYDDLSKQAAAYRELSLLL 184 (275) T ss_dssp CEEEEEEECHHHHHHHHHHHHTTT T ss_pred CCEEEEECCCHHHHHHHHHHHHHC T ss_conf 948999527078888999999873 No 114 >>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:157-289) Probab=32.77 E-value=31 Score=14.74 Aligned_cols=97 Identities=8% Similarity=-0.095 Sum_probs=56.8 Q ss_pred HHH-HHHH--CCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 999-9996--899824515876546789--99998765158861332204666660256999999998649981898511 Q gi|254780579|r 53 AFE-LLEN--QIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH 127 (207) Q Consensus 53 a~~-L~~~--g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs 127 (207) +.+ |.++ |.....+++|.....+.. +-.+..+.+.+.... +.......+..+......+++.++..-..+++.+ T Consensus 8 a~~~L~~~~~g~~~i~~i~g~~~~~~~~R~~Gf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 86 (133) T 1jx6_A 8 LATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFEL-QSAYYTKATKQSGYDAAKASLAKHPDVDFIYACS 86 (133) T ss_dssp HHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEE-EEEECCCSSHHHHHHHHHHHHHHCCCCSEEEESS T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 999999846997479981599985699999999999986327885-1598379999999999999754256662357437 Q ss_pred HHHHHHHHHHHHHHCC-CCEEEEE Q ss_conf 4421999999998629-9879996 Q gi|254780579|r 128 DYHMPRTFLELQRINS-TVQFIPY 150 (207) Q Consensus 128 ~yHm~RA~~~f~~~~p-~i~i~~~ 150 (207) +....-+...++...| ++.++.+ T Consensus 87 d~~a~g~~~al~~~g~~~i~ivg~ 110 (133) T 1jx6_A 87 TDVALGAVDALAELGREDIMINGW 110 (133) T ss_dssp HHHHHHHHHHHHHHTCTTSEEBCS T ss_pred CHHHHHHHHHHHHHCCCCCEEECC T ss_conf 599999999998748988289816 No 115 >>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle structural genomics center for infectious disease; 1.80A {Brucella abortus} (A:) Probab=32.68 E-value=31 Score=14.73 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=42.6 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHH--HCCCCHHHEECCCCCCCHHH Q ss_conf 68789994698579999999999689982451587654678999998765--15886133220466666025 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPI--RQDLAECCIDIGYKALNTEG 105 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~--~~~i~~~~I~~e~~s~~T~e 105 (207) ..++|+|.|-.+-=+.+-++|.++|...+-++-|..-++-.+.-.|+.+. +.++|.. .....+.-|+.- T Consensus 130 ~~~~IvvIGNAPTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESK~~L~~~~~~iP~I-t~~G~kGGS~vA 200 (212) T 3e7d_A 130 IEGSIVAIGNAPTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYV-IVRGRRGGSAMT 200 (212) T ss_dssp CTTCEEEESSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEE-EECSSCCCHHHH T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCEE-EEECCCCCHHHH T ss_conf 79988996787599999999874379987179975876547499999998376999989-983598639999 No 116 >>2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:334-428) Probab=32.67 E-value=31 Score=14.73 Aligned_cols=30 Identities=7% Similarity=-0.233 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCHHHHH Q ss_conf 025699999999864998189851144219 Q gi|254780579|r 103 TEGNAQEASAWAEKNNFHHVLIVTHDYHMP 132 (207) Q Consensus 103 T~ena~~~~~~l~~~~~~~iiLVTs~yHm~ 132 (207) +-+......+.+++++...-+-|+.+||.+ T Consensus 49 ~~~~l~~~~~~l~~~~~~~~L~v~~afHs~ 78 (95) T 2pff_B 49 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 78 (95) T ss_dssp SHHHHHHHHHHHHTTSCCSCCCTTSCCTTT T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 989999999998604799998966598865 No 117 >>1dxl_A Dihydrolipoamide dehydrogenase; multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex, flavoprotein; HET: FAD; 3.15A {Pisum sativum} (A:158-275) Probab=32.66 E-value=31 Score=14.73 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=41.9 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC--C--CCHHHHHHHHHHHCCCC Q ss_conf 456878999469857999999999968998245158765--4--67899999876515886 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH--S--VSKDILLQKIPIRQDLA 90 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~--~--~~~~~~~~~~~~~~~i~ 90 (207) .....-++|+|||.-=++.|..|.+.|..-.++..+... . ..-.+.+...+.+.|+. T Consensus 17 ~~~~~~v~IiGgG~ig~e~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gI~ 77 (118) T 1dxl_A 17 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK 77 (118) T ss_dssp SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 1079839999968999999999997099799998468568655989999999999971972 No 118 >>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* (A:1-82,A:184-260,A:393-424) Probab=31.79 E-value=32 Score=14.64 Aligned_cols=33 Identities=9% Similarity=0.203 Sum_probs=25.7 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 5687899946985799999999996899824515 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) ...| |+|.|||..=+..|..|.++|....+++- T Consensus 5 ~k~D-VIIIGAGiAGLSAA~~LAk~G~ksVlILE 37 (191) T 2b9w_A 5 KDSR-IAIIGAGPAGLAAGMYLEQAGFHDYTILE 37 (191) T ss_dssp TTCC-EEEECCSHHHHHHHHHHHHTTCCCEEEEC T ss_pred CCCC-EEEECCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 9998-99989848999999999856999889995 No 119 >>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, FAD, NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* (A:1-109,A:245-307) Probab=31.64 E-value=32 Score=14.62 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=25.1 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCE-ECCC Q ss_conf 899946985799999999996899824-5158 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKI-FISG 69 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~i-i~SG 69 (207) -+||+|||.-=+..|.+|.+.+....| +++- T Consensus 6 ~VVIIGgG~aG~~~A~~l~r~g~~~~I~vi~~ 37 (172) T 2v3a_A 6 PLVIIGTGLAGYNLAREWRKLDGETPLLMITA 37 (172) T ss_dssp CEEEECCSHHHHHHHHHHHTTCSSSCEEEECS T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 99999788999999999981697986899959 No 120 >>3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} (G:) Probab=31.63 E-value=32 Score=14.62 Aligned_cols=130 Identities=5% Similarity=-0.043 Sum_probs=65.9 Q ss_pred CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHH------EECCCCCCC--HHH-HHHHHH---- Q ss_conf 9857999999999968998245158765467899999876515886133------220466666--025-699999---- Q gi|254780579|r 45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC------IDIGYKALN--TEG-NAQEAS---- 111 (207) Q Consensus 45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~------I~~e~~s~~--T~e-na~~~~---- 111 (207) ...+.+++++++.++.+.|.|++.++.......+...++.+..|+|--. +.-++.+.. ++- .+-... T Consensus 19 ~~~~~i~~~~~~L~~AkrPvii~G~~~~~~~~~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~g~~~g~~g~~G~~~~ 98 (170) T 3cf4_G 19 SKAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPK 98 (170) T ss_dssp CEECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTT T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCCCCHHCCCCCCCCCCCCCHHH T ss_conf 45369999999999669988996888643268999999999849788987222676776682111645222465221027 Q ss_pred ----HHHHHCCCCEEEEE-CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf ----99986499818985-114421999999998629987999641676667542116989999999999 Q gi|254780579|r 112 ----AWAEKNNFHHVLIV-THDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEY 176 (207) Q Consensus 112 ----~~l~~~~~~~iiLV-Ts~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey 176 (207) +.++ +..=++++ +.-.-+.-....+...-.-+.|...|.....+..+--..........+.+. T Consensus 99 ~~~~~~~~--~aDlii~iG~~~~~~~t~~~~~~~~~~~i~Id~d~~~~~~~~~~~~~~~da~~~~~L~~L 166 (170) T 3cf4_G 99 WPGLDGNG--NYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIERGYIQNATMSFGNLSKADHYAALDEL 166 (170) T ss_dssp CCCSSSSC--CCSEEEEESCCHHHHHHHHHHHHHHCCCCEEECSSSCCTTSSEECCCCCHHHHHHHHHHH T ss_pred HHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 88885334--678899957700421412023346677079982801314765255855589999999999 No 121 >>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiamine diphosphate; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* (A:192-368) Probab=31.33 E-value=24 Score=15.46 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=31.0 Q ss_pred CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH Q ss_conf 98579999999999689982451587654678999998765158861 Q gi|254780579|r 45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE 91 (207) Q Consensus 45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~ 91 (207) ...+.++.++++.++...|.|++.++.......+..+.+....|+|- T Consensus 5 p~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv 51 (177) T 2q28_A 5 PCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPF 51 (177) T ss_dssp ECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC T ss_conf 99999999998765336987999535333257999999975325875 No 122 >>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:158-285) Probab=30.92 E-value=33 Score=14.55 Aligned_cols=95 Identities=13% Similarity=0.001 Sum_probs=65.0 Q ss_pred HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 999999689982451587654678---99999876515886133220466666025699999999864998189851144 Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) +-.|+++|+....+++|....... ..-.+..+.+.+++.. .....+..+......+++.+.+....+++.++. T Consensus 9 ~~~L~~~G~~~ia~i~~~~~~~~~~~R~~g~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~ 84 (128) T 3jvd_A 9 TESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVT----FHFGHYSVESGEEMAQVVFNNGLPDALIVASPR 84 (128) T ss_dssp HHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE----EEECCSSHHHHHHHHHHHHHTCCCSEEEECCHH T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----CEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 0012345531687504653211245544667778986086422----200254224577888988750431155543466 Q ss_pred HHHHHHHHHHHHC---C-CCEEEEEE Q ss_conf 2199999999862---9-98799964 Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPYP 151 (207) Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~p 151 (207) ..-.++..++... | ++.++.+- T Consensus 85 ~a~~~~~~l~~~g~~vP~di~iv~~d 110 (128) T 3jvd_A 85 LMAGVMRAFTRLNVRVPHDVVIGGYD 110 (128) T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEES T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 66553578888750578977999989 No 123 >>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} (A:155-272) Probab=30.89 E-value=33 Score=14.54 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=41.2 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-----CCHHHHHHHHHHHCCCC Q ss_conf 4568789994698579999999999689982451587654-----67899999876515886 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-----VSKDILLQKIPIRQDLA 90 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-----~~~~~~~~~~~~~~~i~ 90 (207) ....+-++|.|||.-=++.|..|.+.|..-.++..+.... ...+.+++....+.|+. T Consensus 17 ~~~~k~v~ViGgG~ig~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~gV~ 78 (118) T 2qae_A 17 PRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMK 78 (118) T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCE T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC T ss_conf 22598799989888999999999960987999983230100000100101343210112221 No 124 >>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} (A:1-130,A:276-315) Probab=30.81 E-value=33 Score=14.54 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=40.6 Q ss_pred HHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC----HHHHHHHHHHHHHHC Q ss_conf 8765158861332204666660256999999998649981898511----442199999999862 Q gi|254780579|r 82 KIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH----DYHMPRTFLELQRIN 142 (207) Q Consensus 82 ~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs----~yHm~RA~~~f~~~~ 142 (207) ..+.+.|. .|.+|+-...|.+++.+..+..+++|.. +.|.. ..-+.||...|..+. T Consensus 87 ~~al~aGk---hVl~EKPla~~~ee~~eL~~~a~~~g~~--v~V~~~~R~~~~~~~~~~~~~~~~ 146 (170) T 3c1a_A 87 LAAIASGK---AVLVEKPLTLDLAEAEAVAAAAKATGVX--VWVEHTQLDEXPLTRAVRLFAGAV 146 (170) T ss_dssp HHHHHTTC---EEEEESSSCSCHHHHHHHHHHHHHHCCC--EEEECGGGCCCHHHHHHHHHHHHT T ss_pred CCCCCCCC---HHHCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 00002331---1012545321112233201233203433--322332236569999999999999 No 125 >>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA; 2.30A {Thermus thermophilus HB8} (A:149-293) Probab=30.47 E-value=34 Score=14.50 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=26.6 Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 65456878999469857999999999968998245158 Q gi|254780579|r 32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) .+.++.|.++|.|||..=...++.|.+.+-...+.+.. T Consensus 14 ~~~~~g~~vlV~Gag~~~g~~~~~la~~~g~~vi~~~~ 51 (145) T 2eih_A 14 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG 51 (145) T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 29899699999899649999999999987998999979 No 126 >>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} (A:135-248) Probab=30.33 E-value=34 Score=14.49 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=35.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 87899946985799999999996899824515876546789999987651588 Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDL 89 (207) Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i 89 (207) ..-++|+|||..-++.|..|.+.+..-.++.-+.....++.. .....+.++ T Consensus 21 gk~v~ViGgg~~a~e~A~~l~~~~~~Vtiv~~~~~~~~~~~~--~~~~~~~~i 71 (114) T 3cty_A 21 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAY--VQEIKKRNI 71 (114) T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHH--HHHHHHTTC T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH--HHHHHHCCC T ss_conf 976899855001134444553046268640345400000113--345430320 No 127 >>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} (A:1-111,A:270-318) Probab=30.17 E-value=34 Score=14.47 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=25.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 999469857999999999968998245158 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) |||+|||.-=+..|.+|.+.+....|++-. T Consensus 3 vvIIGgG~aGl~~A~~L~~~~~~~~I~li~ 32 (160) T 1nhp_A 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYE 32 (160) T ss_dssp EEEECSSHHHHHHHHHHHHHCTTSEEEEEE T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 999997899999999998069688389991 No 128 >>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* (A:1-69,A:187-260,A:371-427) Probab=30.11 E-value=34 Score=14.46 Aligned_cols=52 Identities=10% Similarity=-0.047 Sum_probs=37.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC--CHHHHHHHHHHHCCCC Q ss_conf 899946985799999999996899824515876546--7899999876515886 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV--SKDILLQKIPIRQDLA 90 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~--~~~~~~~~~~~~~~i~ 90 (207) -++|.|||.-=+..|..|.+.|....++-....... .....+.+.+.+.|+. T Consensus 34 ~v~iiG~G~~g~~~a~~~~~~g~~v~~~~~~~~~~~p~~l~~~l~~~~~~~Gv~ 87 (200) T 2rgh_A 34 DLLIIGGGITGAGVAVQAAASGIKTGLIEXQDFAEGDARLVIDNIKKAAEDGAY 87 (200) T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCE T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHCHHHHHHHHHHHHHHHHC T ss_conf 499989619999999999977998999969978540378888887777765420 No 129 >>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} (A:17-217) Probab=30.06 E-value=34 Score=14.46 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=27.3 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHH Q ss_conf 220466666025699999999864--99818985114421999999 Q gi|254780579|r 94 IDIGYKALNTEGNAQEASAWAEKN--NFHHVLIVTHDYHMPRTFLE 137 (207) Q Consensus 94 I~~e~~s~~T~ena~~~~~~l~~~--~~~~iiLVTs~yHm~RA~~~ 137 (207) ++.-..+.-|.|+...+..+.+-. .-+-++++...|+....... T Consensus 119 ~i~l~gg~gtl~E~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 164 (201) T 1wek_A 119 FVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDRGYWEGLVRWL 164 (201) T ss_dssp EEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEECHHHHHHHHHHH T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHH T ss_conf 5880676305789999999875056543301214786118899999 No 130 >>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} (A:127-259,A:340-385) Probab=29.86 E-value=35 Score=14.44 Aligned_cols=90 Identities=9% Similarity=-0.003 Sum_probs=42.6 Q ss_pred HHHHHHHHCCCCCEECCCC--CCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 9999999689982451587--65467899999876515886133220466666025699999999864998189851144 Q gi|254780579|r 52 RAFELLENQIGEKIFISGV--HHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~--~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207) ..+++..+...+++.+-.. ..+......++..+.+.|+.-....... ...+..+......-++..+-+-++++.+.- T Consensus 4 al~~~l~~~g~kkVaiI~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~-~~~~~~D~~~~i~~i~~~~pd~Vi~~~~~~ 82 (179) T 1pea_A 4 PLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIP-LYPSDDDLQRAVERIYQARADVVFSTVVGT 82 (179) T ss_dssp HHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC-SSCCHHHHHHHHHHHHHHTCSEEEEECCTH T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCHHHHHHHHHHHCCCCEEEEEEECH T ss_conf 9999998717847998226776235565546666664168357899616-764420168999998751899899996347 Q ss_pred HHHHHHHHHHHHC Q ss_conf 2199999999862 Q gi|254780579|r 130 HMPRTFLELQRIN 142 (207) Q Consensus 130 Hm~RA~~~f~~~~ 142 (207) .+...+..+++.. T Consensus 83 ~~~~~l~qa~~~G 95 (179) T 1pea_A 83 GTAELYRAIARRY 95 (179) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHC T ss_conf 7999999999847 No 131 >>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} (A:1-8,A:70-209) Probab=29.81 E-value=35 Score=14.43 Aligned_cols=68 Identities=15% Similarity=0.008 Sum_probs=45.1 Q ss_pred CCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 588613322046666602569999999986499818985114421999999998629987999641676 Q gi|254780579|r 87 QDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 87 ~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) ..+....+++-..-.+|=.....+.+.++++|.+++.++|.--=..+... ..+..++..++.....++ T Consensus 59 ~~v~gk~ViivDDii~TG~Tl~~~~~~L~~~Ga~~I~~~~l~~~~~~~~~-~~~~~~~~~i~t~~~~~~ 126 (148) T 1i5e_A 59 SDVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKA-VETAHPDVDIYIAALDER 126 (148) T ss_dssp TTTTTSEEEEECSEESSSHHHHHHHHHHHHTTCCCEEEECSEECHHHHHH-HHHHCTTCEEEESEECCE T ss_pred CCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHH-HHHHCCCCEEEEEEECCC T ss_conf 76666508987366523266999999999679970899998633889999-999796968999997687 No 132 >>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG, PSI; HET: DTY; 2.80A {Geobacillus stearothermophilus} (A:122-293) Probab=29.68 E-value=35 Score=14.42 Aligned_cols=41 Identities=12% Similarity=-0.098 Sum_probs=29.3 Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC Q ss_conf 76545687899946985799999999996899824515876 Q gi|254780579|r 31 IPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH 71 (207) Q Consensus 31 ~~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~ 71 (207) ....++.|.++|.|||..=-..++.+.+.+-...|.++... T Consensus 23 ~~~~~~g~~Vli~gag~~vG~~a~~~ak~~g~~vi~~~~~~ 63 (172) T 1xa0_A 23 HGLTPERGPVLVTGATGGVGSLAVSXLAKRGYTVEASTGKA 63 (172) T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC T ss_conf 24578876499935757665444323124785035530551 No 133 >>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} (A:1-34,A:114-150,A:297-347) Probab=29.62 E-value=35 Score=14.41 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=26.1 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 5687899946985799999999996899824515 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) ++.|.| |.|||+.=+..|+.+.+.|....++=. T Consensus 2 ~~~d~~-iig~gp~g~~aa~~~~~~~~~~~~~e~ 34 (122) T 3lad_A 2 QKFDVI-VIGAGPGGYVAAIKSAQLGLKTALIEK 34 (122) T ss_dssp CCCSEE-EECCSHHHHHHHHHHHHHTCCEEEEEC T ss_pred CCCCEE-EECCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 717699-988888999999999978893999950 No 134 >>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 2q6u_A* (A:1-41,A:153-211,A:330-397) Probab=29.49 E-value=35 Score=14.40 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=38.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC-CHHHHHHHHHHHCCCC Q ss_conf 87899946985799999999996899824515876546-7899999876515886 Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV-SKDILLQKIPIRQDLA 90 (207) Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~-~~~~~~~~~~~~~~i~ 90 (207) .| ++|.|||.-=+..|..|.+.|..-.++--+..... .-.+.+.+.+.+.|+. T Consensus 5 ~~-~~vig~g~~g~~~a~~~~~~g~~v~~~~~~~~~~~~~l~~~l~~~~~~~Gv~ 58 (168) T 2oln_A 5 YD-VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNERGTLAALFTLAQAAGAT 58 (168) T ss_dssp EE-EEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSHHHHHHHHHHHHHTTCE T ss_pred CC-EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCC T ss_conf 87-8998968999999999998899689990899887643322100110134321 No 135 >>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain, transport protein; NMR {Escherichia coli K12} (A:) Probab=29.06 E-value=36 Score=14.35 Aligned_cols=55 Identities=5% Similarity=0.068 Sum_probs=39.1 Q ss_pred CCHHHHHHHHHH-HCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 678999998765-1588613322046666602569999999986499818985114 Q gi|254780579|r 74 VSKDILLQKIPI-RQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 74 ~~~~~~~~~~~~-~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) .+..++...... ...-++..|.+-......|+......+.+++.|++++-|+|.. T Consensus 39 v~~~~l~~~l~~~~~~~~~~~V~i~aD~~~~y~~vv~vmd~l~~aG~~~v~l~t~~ 94 (99) T 2pfu_A 39 VTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEE 94 (99) T ss_dssp ECSSSHHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTTCC T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 13066899999998358997599980799878899999999998699769999678 No 136 >>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} (A:) Probab=28.69 E-value=5.4 Score=19.38 Aligned_cols=65 Identities=8% Similarity=0.041 Sum_probs=42.1 Q ss_pred HHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 515886133220466666025699999999864998189851144219999999986299879996416 Q gi|254780579|r 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPII 153 (207) Q Consensus 85 ~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~ 153 (207) ....+....+++-..--+|=.....+.+.+++.|.++|.++ +..=.+++...+... .+++..-++ T Consensus 114 ~~~~v~gk~viIvDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~-~~i~~~~a~~~l~~~---~d~v~~~~~ 178 (208) T 1wd5_A 114 PKAARKGRDVVLVDDGVATGASXEAALSVVFQEGPRRVVVA-VPVASPEAVERLKAR---AEVVALSVP 178 (208) T ss_dssp CCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEE-EEEBCHHHHHHHHTT---SEEEEEECC T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHCCCC---CCEEEECCC T ss_conf 96244898899994221434669999999983699889998-224886788650457---998998788 No 137 >>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* (A:1-40,A:148-221,A:327-383) Probab=28.67 E-value=36 Score=14.31 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=35.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC--CHHHHHHHHHHHCCCC Q ss_conf 87899946985799999999996899824515876546--7899999876515886 Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV--SKDILLQKIPIRQDLA 90 (207) Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~--~~~~~~~~~~~~~~i~ 90 (207) .| ++|.|+|.-=+..|.+|.+.|....++=.+..... .-.+.+.+.+.+.|+. T Consensus 4 ~~-v~iiG~G~~g~~~a~~la~~g~~v~v~e~~~~~~~d~~l~~~~~~~a~~~Gv~ 58 (171) T 2qcu_A 4 KD-LIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACADARLVLANAQMVVRKGGE 58 (171) T ss_dssp BS-EEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCE T ss_pred CC-EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 79-89999679999999999978997999969977460078799999866651434 No 138 >>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} (A:1-132) Probab=28.39 E-value=37 Score=14.28 Aligned_cols=61 Identities=3% Similarity=-0.209 Sum_probs=38.7 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC--CCCCCCCHHHHHHHHHHHCCCCHHHEE Q ss_conf 5687899946985799999999996899824515--876546789999987651588613322 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS--GVHHSVSKDILLQKIPIRQDLAECCID 95 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S--G~~~~~~~~~~~~~~~~~~~i~~~~I~ 95 (207) ...+++|.++||.+=...+.-+.+.+......+. .+.....+.+.++..+...|++-..+. T Consensus 24 ~~~~v~v~~SGG~DS~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~i~~~~i~ 86 (132) T 1xng_A 24 GFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYS 86 (132) T ss_dssp TCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 998299978788899999999998624330787225301561133679999998531340000 No 139 >>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris} (A:1-30,A:184-331) Probab=28.23 E-value=37 Score=14.26 Aligned_cols=71 Identities=7% Similarity=-0.011 Sum_probs=49.7 Q ss_pred HHHHHHHHHHHHHCCCCC-EEC------CC-CCCCCCHHHHHHHHHHH--CCCCHHHEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 579999999999689982-451------58-76546789999987651--588613322046666602569999999986 Q gi|254780579|r 47 PIRIERAFELLENQIGEK-IFI------SG-VHHSVSKDILLQKIPIR--QDLAECCIDIGYKALNTEGNAQEASAWAEK 116 (207) Q Consensus 47 ~~Ri~~a~~L~~~g~~~~-ii~------SG-~~~~~~~~~~~~~~~~~--~~i~~~~I~~e~~s~~T~ena~~~~~~l~~ 116 (207) +.|+.+|+++.+....+. ++. +. .....+++++.....+. +|...-.|+-+..-.+|.++.+..++++.. T Consensus 85 r~RV~EA~RVa~~~~~~lPVf~Y~r~~y~d~t~~fLs~~DL~~TigesaalGaaGvViWGss~~~~Sk~~C~~l~~Yl~~ 164 (178) T 2atm_A 85 QGRVKEAVRISNNLKHSPKVLSYWWYVYQDETNTFLTETDVKKTFQEIVINGGDGIIIWGSSSDVNSLSKCKRLQDYLLT 164 (178) T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEEESEETTEEEEECCHHHHHHHHHHHHHTTCCEEEEECCGGGGSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHC T ss_conf 99999999998606899853545535761651355788999999999998499889995464001688988989999861 Q ss_pred C Q ss_conf 4 Q gi|254780579|r 117 N 117 (207) Q Consensus 117 ~ 117 (207) . T Consensus 165 ~ 165 (178) T 2atm_A 165 V 165 (178) T ss_dssp T T ss_pred C T ss_conf 6 No 140 >>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} (A:1-193) Probab=28.23 E-value=37 Score=14.26 Aligned_cols=92 Identities=7% Similarity=-0.110 Sum_probs=50.5 Q ss_pred CCCCCCEEEEECCCHHH-HH--HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH Q ss_conf 54568789994698579-99--9999999689982451587654678999998765158861332204666660256999 Q gi|254780579|r 33 DHPSVSAIVVLTGEPIR-IE--RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQE 109 (207) Q Consensus 33 ~~~~~DaIVVLgGg~~R-i~--~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~ 109 (207) ...+++-|.+.|-|..- +. .+..|.+.++.+....++ .+....... ..-+++++++-..+..|-+ ... T Consensus 39 ~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l~~~~~~~~~~-------~~~~~~~~~-~~~~~d~vI~iS~sG~t~~-~~~ 109 (193) T 3fj1_A 39 RLRDPSFVATVARGSSDHVCTYLSYAAELLLGLPVASLGP-------SVASVYDAR-LRLDRALCLAVSQSGKSPD-IVA 109 (193) T ss_dssp HHHCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEECCT-------HHHHTTCCC-CCCTTEEEEEEESSSCCHH-HHH T ss_pred HHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECH-------HHHHHCCCC-CCCCCEEEEEEECCCCCHH-HHH T ss_conf 3069878999951289999999999999984998599515-------255441366-7889849999977899748-999 Q ss_pred HHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 9999986499818985114421999 Q gi|254780579|r 110 ASAWAEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 110 ~~~~l~~~~~~~iiLVTs~yHm~RA 134 (207) +.+.++++|. .++.+|+....+-+ T Consensus 110 ~~~~ak~~g~-~vi~iT~~~~s~l~ 133 (193) T 3fj1_A 110 XTRNAGRDGA-LCVALTNDAASPLA 133 (193) T ss_dssp HHHHHHHTTC-EEEEEESCTTSHHH T ss_pred HHHHHHHCCC-EEEEEECCCCCCCC T ss_conf 9999877599-49998447998701 No 141 >>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} (A:121-221) Probab=27.14 E-value=33 Score=14.58 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=29.3 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 687899946985799999999996899824515876546789999987651588 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDL 89 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i 89 (207) ...-++|+|||..=++.|..|.+-+..-.++..|...... ++..+...++ T Consensus 20 ~gk~v~ViG~g~~a~~~A~~l~~~~~~Vti~~~~~~~~~~----~~~~l~~~~i 69 (101) T 3fbs_A 20 DQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDAD----QHALLAARGV 69 (101) T ss_dssp TTCEEEEECCSTTHHHHHHHGGGTSEEEEECTTTCCCCHH----HHHHHHHTTC T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHCHH----HHHHHHHCHH T ss_conf 7987999658746999999997389889998276110757----8998742200 No 142 >>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:120-235) Probab=27.10 E-value=39 Score=14.14 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=41.8 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-----CCHHHHHHHHHHHCCCC Q ss_conf 4568789994698579999999999689982451587654-----67899999876515886 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-----VSKDILLQKIPIRQDLA 90 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-----~~~~~~~~~~~~~~~i~ 90 (207) .....-++|.|||.-=++.|..|.+.|....++..+.... ....+.....+.+.|+. T Consensus 23 ~~~~~~v~IiGgG~~GiE~A~~l~~~g~~v~li~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 84 (116) T 2gqw_A 23 LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVD 84 (116) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCE T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE T ss_conf 25676308972411111112221221035776425550012246577899999986521103 No 143 >>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} (A:108-263,A:347-379) Probab=27.05 E-value=39 Score=14.13 Aligned_cols=89 Identities=9% Similarity=0.055 Sum_probs=61.2 Q ss_pred HHHHH-HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 99999-68998245158765467899999876515886133220-46666602569999999986499818985114421 Q gi|254780579|r 54 FELLE-NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDI-GYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM 131 (207) Q Consensus 54 ~~L~~-~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~-e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm 131 (207) ++|.+ -++....+++..+.+....+.+...+...++.-..... .....++.++.....+-+++.+.+-+++.++..+. T Consensus 6 ~dll~~f~W~~V~iIyddd~g~~~l~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~l~~i~~~~arVIIl~~~~~~~ 85 (189) T 3kg2_A 6 LSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKV 85 (189) T ss_dssp HHHHHHTTCSEEEEEECGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHH T ss_pred HHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHH T ss_conf 99999879989999997955388999999999976998999998715888744779999998762599889999352787 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999862 Q gi|254780579|r 132 PRTFLELQRIN 142 (207) Q Consensus 132 ~RA~~~f~~~~ 142 (207) ++-+....+.. T Consensus 86 ~~ll~~a~~~~ 96 (189) T 3kg2_A 86 NDIVDQVITIG 96 (189) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHC T ss_conf 89999999737 No 144 >>3g68_A Putative phosphosugar isomerase; YP_001089791.1, SIS domain, double-SIS domain protein, structural genomics; HET: MSE CIT; 1.80A {Clostridium difficile 630} (A:1-188) Probab=26.73 E-value=39 Score=14.10 Aligned_cols=94 Identities=6% Similarity=-0.113 Sum_probs=53.5 Q ss_pred CCCCCCCCEEEEECCCHHHHH---HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHH Q ss_conf 765456878999469857999---99999996899824515876546789999987651588613322046666602569 Q gi|254780579|r 31 IPDHPSVSAIVVLTGEPIRIE---RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNA 107 (207) Q Consensus 31 ~~~~~~~DaIVVLgGg~~Ri~---~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena 107 (207) .....+++-|.+.|-|..-.. .+..|.+.+..+..+..+... ... .....-++++++.-..+..|.+ . T Consensus 28 ~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~d~vI~iS~sG~t~e-~ 98 (188) T 3g68_A 28 EVKRTNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKXYPFXI-------TED-TFKFDNENTLVVGVSQGGSSYS-T 98 (188) T ss_dssp TGGGSCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEEECGGGC-------CGG-GGSSCCTTEEEEEEESSSCCHH-H T ss_pred HHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH-------EEC-CCCCCCCCCEEEEEECCCCCHH-H T ss_conf 998679997999997108999999999999985999899412453-------003-3212468863887607868589-9 Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 999999986499818985114421999 Q gi|254780579|r 108 QEASAWAEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 108 ~~~~~~l~~~~~~~iiLVTs~yHm~RA 134 (207) ....+.++++|. .++.+|+..+.+=+ T Consensus 99 ~~~~~~ak~~g~-~vi~iT~~~~s~l~ 124 (188) T 3g68_A 99 YNAXKLAEDKGC-KIASXAGCKNALID 124 (188) T ss_dssp HHHHHHHHHTTC-EEEEEESSTTCGGG T ss_pred HHHHHHHHHCCC-CCCCCCCCCCCCCH T ss_conf 999987765386-42235566666201 No 145 >>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (A:95-371) Probab=26.70 E-value=39 Score=14.10 Aligned_cols=96 Identities=7% Similarity=-0.018 Sum_probs=61.2 Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCC-------HHHHHHHHHHHHHHCCC Q ss_conf 57999999999968998245158765467899999876515886133220466666-------02569999999986499 Q gi|254780579|r 47 PIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALN-------TEGNAQEASAWAEKNNF 119 (207) Q Consensus 47 ~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~-------T~ena~~~~~~l~~~~~ 119 (207) ..-+...+..........+++.+.+....|.....+...+.+..+..+.+-..+.. +-.-+...++++.++|- T Consensus 82 KT~Ll~~i~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~t~vv~~ts~~~~~~r~~~~~~a~~~AE~~r~~G~ 161 (277) T 1fx0_A 82 KTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRER 161 (277) T ss_dssp HHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 77899998876527885899997211389999999964027863233100246667788888888889899999996467 Q ss_pred CEEEEECCHHHHHHHHHHHHHHC Q ss_conf 81898511442199999999862 Q gi|254780579|r 120 HHVLIVTHDYHMPRTFLELQRIN 142 (207) Q Consensus 120 ~~iiLVTs~yHm~RA~~~f~~~~ 142 (207) +-+++..|=...-||..+..... T Consensus 162 ~Vll~~Dsltr~a~A~reis~~~ 184 (277) T 1fx0_A 162 HTLIIYDDLSKQAQAYRQMSLLL 184 (277) T ss_dssp EEEEEEECHHHHHHHHHHHHHHT T ss_pred CEEEEECCHHHHHHHHHHHHHHC T ss_conf 72699618589999999999862 No 146 >>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} (A:347-470) Probab=26.50 E-value=40 Score=14.07 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=50.8 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHH Q ss_conf 56878999469857999999999968998245158765467899999876515886133220466666025699999999 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWA 114 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l 114 (207) -++++|||++-+.. .|..+.+..+..+|+.-- ......+.+....|+.. .+-+...++.+-..++.+++ T Consensus 23 l~a~aIv~~T~sG~---ta~~iSk~Rp~~pI~a~t-----~~~~~~r~L~l~~GV~p---~~~~~~~~~~~~~~~a~~~l 91 (124) T 1e0t_A 23 LDAPLIVVATQGGK---SARAVRKYFPDATILALT-----TNEKTAHQLVLSKGVVP---QLVKEITSTDDFYRLGKELA 91 (124) T ss_dssp TTCSBEEEECSSSH---HHHHHHTTCCSSBEEEEE-----SCHHHHHHGGGSTTEEE---EECSCCCSHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHCCCCEEE---EECCCCCCHHHHHHHHHHHH T ss_conf 59988999889828---999999559899989988-----98899988654177599---98289899999999999999 Q ss_pred HHCCC----CEEEEEC Q ss_conf 86499----8189851 Q gi|254780579|r 115 EKNNF----HHVLIVT 126 (207) Q Consensus 115 ~~~~~----~~iiLVT 126 (207) +++|+ ..++++. T Consensus 92 ~~~g~~~~Gd~vvi~~ 107 (124) T 1e0t_A 92 LQSGLAHKGDVVVMVS 107 (124) T ss_dssp HHTSSSCTTCEEEEEE T ss_pred HHCCCCCCCCEEEEEE T ss_conf 9779989979899993 No 147 >>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:7-118,A:1059-1073) Probab=26.43 E-value=40 Score=14.06 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=8.6 Q ss_pred CEEEEECCCHHHHHHHHHHHHHC Q ss_conf 78999469857999999999968 Q gi|254780579|r 38 SAIVVLTGEPIRIERAFELLENQ 60 (207) Q Consensus 38 DaIVVLgGg~~Ri~~a~~L~~~g 60 (207) |+|++--||+-.++.|++|.+.| T Consensus 78 dgVLlt~GGQtaLN~~i~L~~~G 100 (127) T 1a9x_A 78 DAVLPTMGGQTALNCALELERQG 100 (127) T ss_dssp SEEECSSSHHHHHHHHHHHHHTT T ss_pred CEEEECCCCHHHHHHHHHHHHCC T ss_conf 99996887725789899999759 No 148 >>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinone reduction, structural genomics, structural genomics consortium, SGC; HET: NAP; 1.85A {Homo sapiens} (A:154-318) Probab=26.16 E-value=40 Score=14.04 Aligned_cols=39 Identities=8% Similarity=-0.168 Sum_probs=27.7 Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 765456878999469857999999999968998245158 Q gi|254780579|r 31 IPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 31 ~~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) ..+.++.|-|+|.|++..=-..++.+.+..-...+.++. T Consensus 12 ~~~i~~g~~VlI~Ga~g~vG~~a~~~a~~~g~~vi~~~~ 50 (165) T 1yb5_A 12 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG 50 (165) T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES T ss_pred HCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 138999399999889669999999999984995999603 No 149 >>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78) Probab=26.14 E-value=33 Score=14.57 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=16.4 Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHH Q ss_conf 65456878999469857999999999 Q gi|254780579|r 32 PDHPSVSAIVVLTGEPIRIERAFELL 57 (207) Q Consensus 32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~ 57 (207) .....+|.+|++||+ +-+..|++++ T Consensus 37 ~~~~~~Dlvi~iGGD-GT~L~a~~~~ 61 (78) T 1yt5_A 37 PGRVTADLIVVVGGD-GTVLKAAKKA 61 (78) T ss_dssp CSCBCCSEEEEEECH-HHHHHHHTTB T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHH T ss_conf 556787899998985-9999999971 No 150 >>1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} (A:144-230) Probab=26.08 E-value=40 Score=14.03 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=35.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC---CCCHHHHHHHHHHHCCC Q ss_conf 999469857999999999968998245158765---46789999987651588 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHH---SVSKDILLQKIPIRQDL 89 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~---~~~~~~~~~~~~~~~~i 89 (207) ++|.|||.-=++.|..|.+.|..-.++-.+... .....+...+.+.+.++ T Consensus 3 v~VvGgG~~G~E~A~~l~~~g~~Vtii~~~~~~~~~~~~~~~~~~~~l~~~gI 55 (87) T 1xhc_A 3 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGV 55 (87) T ss_dssp EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTE T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC T ss_conf 21346765431126668655872156431024435764899999999986597 No 151 >>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} (A:141-319) Probab=25.93 E-value=41 Score=14.01 Aligned_cols=38 Identities=11% Similarity=-0.066 Sum_probs=29.2 Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 65456878999469857999999999968998245158 Q gi|254780579|r 32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) .+.++.|-|+|.|+|..=-..++++.+..-...+.++. T Consensus 19 ~~l~~g~~VlI~Ga~~~vG~~a~qla~~~g~~vi~~~~ 56 (179) T 2c0c_A 19 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS 56 (179) T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES T ss_pred CCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEEC T ss_conf 11225786169767876554220100357988999989 No 152 >>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-111,A:252-310) Probab=25.80 E-value=41 Score=13.99 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=25.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 999469857999999999968998245158 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) |||.|||+-=+..|.+|.+.|....++-.+ T Consensus 4 VvVIGgGpaGl~aA~~la~~G~~V~iiE~~ 33 (170) T 1fl2_A 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (170) T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEECSS T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 999998799999999999789988999807 No 153 >>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, FMN, FAD, iron, 3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} (G:117-216,G:400-456) Probab=25.53 E-value=41 Score=13.96 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=29.8 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 456878999469857999999999968998245158 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) ++...-|.|.|+|+-=+..|..|.++|+...|+=.. T Consensus 3 ~~~gkkVaVIGaGpaGl~~A~~La~~G~~Vti~E~~ 38 (157) T 2vdc_G 3 RELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRY 38 (157) T ss_dssp SSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSS T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 456866999777658999999998469978999447 No 154 >>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:114-248) Probab=25.20 E-value=42 Score=13.93 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=62.3 Q ss_pred HHHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 999999968998245158765467---89999987651588613322046666602569999999986499818985114 Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207) Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207) +-++....|.....+++|...... ..+-.++.+.+.+....... .....+..+......+++..++--..++++++ T Consensus 11 ~l~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d 89 (135) T 1gud_A 11 FIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVAS-QPADWDRIKALDVATNVLQRNPNIKAIYCAND 89 (135) T ss_dssp HHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEE-EECTTCHHHHHHHHHHHHHHCTTCCEEEESSH T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCEEEE-ECCCHHHHHHHHHHHHHHHHCCCCCEEECCCH T ss_conf 99986277862474036874017888875010345530577640356-41530158999999987652257412322676 Q ss_pred HHHHHHHHHHHHHC-C-CCEEEEE Q ss_conf 42199999999862-9-9879996 Q gi|254780579|r 129 YHMPRTFLELQRIN-S-TVQFIPY 150 (207) Q Consensus 129 yHm~RA~~~f~~~~-p-~i~i~~~ 150 (207) .+...+...++... | ++.++.+ T Consensus 90 ~~a~g~~~al~~~g~p~~i~v~g~ 113 (135) T 1gud_A 90 TMAMGVAQAVANAGKTGKVLVVGT 113 (135) T ss_dssp HHHHHHHHHHHHTTCTTTSEEEEE T ss_pred HHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 999999999997799988389973 No 155 >>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* (A:183-372) Probab=25.11 E-value=42 Score=13.92 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=27.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH Q ss_conf 698579999999999689982451587654678999998765158861 Q gi|254780579|r 44 TGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE 91 (207) Q Consensus 44 gGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~ 91 (207) .++.+-++.++++.++...|.|++.++.......+....+....++|- T Consensus 7 ~~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~~iPv 54 (190) T 2pgn_A 7 HAPNEDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPV 54 (190) T ss_dssp CCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE T ss_conf 575899999876530234333345653123443899999999829747 No 156 >>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} (A:1-130,A:256-265) Probab=24.80 E-value=29 Score=14.92 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=20.9 Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEC Q ss_conf 654568789994698579999999999689982451 Q gi|254780579|r 32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFI 67 (207) Q Consensus 32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~ 67 (207) .....+|.||++||+ +-+..|+++++.+ .|.+=+ T Consensus 64 ~~~~~~D~vI~lGGD-GT~L~a~~~~~~~-~PvlGI 97 (140) T 1z0s_A 64 EELENFDFIVSVGGD-GTILRILQKLKRC-PPIFGI 97 (140) T ss_dssp GGGGGSSEEEEEECH-HHHHHHHTTCSSC-CCEEEE T ss_pred HHCCCCCEEEEECCC-HHHHHHHHHHCCC-CCEEEE T ss_conf 121279999998783-9999999981899-868998 No 157 >>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, alternative splicing, ATP-binding; HET: SEP ANP; 2.90A {Homo sapiens} (B:) Probab=24.72 E-value=43 Score=13.87 Aligned_cols=59 Identities=12% Similarity=0.011 Sum_probs=44.1 Q ss_pred HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHC Q ss_conf 68998245158765467899999876515886133220466666025699999999864 Q gi|254780579|r 59 NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKN 117 (207) Q Consensus 59 ~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~ 117 (207) ......|++++.....++.++...+..--.|..+.|..+..+--++++...+.+-++.. T Consensus 13 ~~~~~~i~V~nLp~~~t~~~L~~~F~~~G~V~~~~i~~~~~~fv~f~~~~~A~~Ai~~~ 71 (115) T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKL 71 (115) T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHH T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHH T ss_conf 99885899996436898999976532121011210134514899989999999999987 No 158 >>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} (A:205-389,A:582-616) Probab=24.72 E-value=43 Score=13.87 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=54.9 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHE------ECCCCCC-----CHHHHHHHHHH Q ss_conf 698579999999999689982451587654678999998765158861332------2046666-----60256999999 Q gi|254780579|r 44 TGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCI------DIGYKAL-----NTEGNAQEASA 112 (207) Q Consensus 44 gGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I------~~e~~s~-----~T~ena~~~~~ 112 (207) ..+.+-++.++++.++...|.|++.++.......+..+.+....|+|-... +-+.... .-...-....+ T Consensus 6 ~~~~~~i~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~Lae~lgiPV~~t~~~kg~~~~~hP~~~G~~~g~~~~~~~~~ 85 (220) T 2pan_A 6 AASRXQIEKAVEXLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLXGWGCIPDDHELXAGXVGLQTAHRYGNA 85 (220) T ss_dssp CCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTBCCCCSSSSCCHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 00006899999999738982899777501130899999999720787323435567532333232322345444223443 Q ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9986499818985114421999999998629987999 Q gi|254780579|r 113 WAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIP 149 (207) Q Consensus 113 ~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~ 149 (207) ++++-+ -|++|=..+-.......-. ..++.+++- T Consensus 86 ~l~~aD--lIL~iG~~l~~~~t~~~~~-~~~~~~iI~ 119 (220) T 2pan_A 86 TLLASD--XVFGIGNRFANRHTGSVEK-YTEGRKIVH 119 (220) T ss_dssp HHHHCS--EEEEESCCCCHHHHSSHHH-HHTTCEEEE T ss_pred HCCCCC--EEEEECCCCCCCCCCCCCC-CCCCCEEEE T ss_conf 034331--1344144555434322123-588981899 No 159 >>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} (A:1-127,A:277-330) Probab=24.66 E-value=43 Score=13.86 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 899999876515886133220466666025699999999864998 Q gi|254780579|r 76 KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH 120 (207) Q Consensus 76 ~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~ 120 (207) ..+.... +.+.|. .|+.|.-...|.+++....+..+++|.. T Consensus 80 H~~~a~~-aL~~GK---hVl~EKP~a~t~eea~eL~~~A~~~gv~ 120 (181) T 3e9m_A 80 HYSAAKL-ALSQGK---PVLLEKPFTLNAAEAEELFAIAQEQGVF 120 (181) T ss_dssp HHHHHHH-HHHTTC---CEEECSSCCSSHHHHHHHHHHHHHTTCC T ss_pred HHHHHHH-HCCCCH---HHHCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 1021133-224331---2220345432211012221122223433 No 160 >>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structural genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} (A:) Probab=24.52 E-value=43 Score=13.85 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=42.2 Q ss_pred HHHHHHHHHHHHH---CCCCCEEC-CCCC--CCCCHHHH-HHHHHHHCCCCHHHEECCCCC------CCHHHHHHHHHHH Q ss_conf 5799999999996---89982451-5876--54678999-998765158861332204666------6602569999999 Q gi|254780579|r 47 PIRIERAFELLEN---QIGEKIFI-SGVH--HSVSKDIL-LQKIPIRQDLAECCIDIGYKA------LNTEGNAQEASAW 113 (207) Q Consensus 47 ~~Ri~~a~~L~~~---g~~~~ii~-SG~~--~~~~~~~~-~~~~~~~~~i~~~~I~~e~~s------~~T~ena~~~~~~ 113 (207) +..+..+.+.++. |...++-. .|-. ....+... -...+.+.|..+-.+.+.... .--+++.....+. T Consensus 71 p~~v~~a~~~L~~~~~gs~v~v~tVigFP~G~~~~~~K~~E~~~A~~~GAdEID~V~n~~~l~~g~~~~v~~ei~~i~~~ 150 (281) T 2a4a_A 71 PKFVKFINEKIKQEINPFKPKIACVINFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSV 150 (281) T ss_dssp GGGHHHHHHHHHHHSSSCCSEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHH T ss_conf 78899999998742478885277307899776626589999999998299757872458998436569999899999999 Q ss_pred HHHCC-C-CEEEEECC---HHH-HHHHHHHHHHHCCCCEEEE Q ss_conf 98649-9-81898511---442-1999999998629987999 Q gi|254780579|r 114 AEKNN-F-HHVLIVTH---DYH-MPRTFLELQRINSTVQFIP 149 (207) Q Consensus 114 l~~~~-~-~~iiLVTs---~yH-m~RA~~~f~~~~p~i~i~~ 149 (207) .+..+ . -++||=|. +-. .++|..+...+ |.+++- T Consensus 151 ~~~~~~~~lKvIlEt~~L~~~e~I~~a~~ia~~a--GadfIK 190 (281) T 2a4a_A 151 KKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNG--NADFIK 190 (281) T ss_dssp HTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTT--TCSEEE T ss_pred HHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHC--CCCHHE T ss_conf 8753797279874000047789999999999841--531420 No 161 >>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NADP-binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* (A:1-127,A:284-371) Probab=24.41 E-value=44 Score=13.83 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=8.9 Q ss_pred EEEECCCHHHHHHHHHHHHHC Q ss_conf 999469857999999999968 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQ 60 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g 60 (207) +-|+.||-+.+.+|++++|+| T Consensus 173 ~~v~~gGl~~v~~gl~~lr~g 193 (215) T 3gqv_A 173 LRVVQGGFDHIKQGMELVRKG 193 (215) T ss_dssp EEEEEECHHHHHHHHHHHHTT T ss_pred EEEEECCHHHHHHHHHHHHCC T ss_conf 589507999999999999879 No 162 >>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:110-255) Probab=24.19 E-value=44 Score=13.81 Aligned_cols=98 Identities=8% Similarity=-0.062 Sum_probs=63.3 Q ss_pred HHHHHHHCCC-C-CEECCCCCCCCC----HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH-HHHHHCCC-C-EEE Q ss_conf 9999996899-8-245158765467----899999876515886133220466666025699999-99986499-8-189 Q gi|254780579|r 53 AFELLENQIG-E-KIFISGVHHSVS----KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS-AWAEKNNF-H-HVL 123 (207) Q Consensus 53 a~~L~~~g~~-~-~ii~SG~~~~~~----~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~-~~l~~~~~-~-~ii 123 (207) +-.|.++|+. . ..+++|..+..+ ...-+++.+.+.+++...+.......++.+++.... +++..++- + ..+ T Consensus 13 ~~~li~~G~~h~~i~~i~~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai 92 (146) T 8abp_A 13 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLI 92 (146) T ss_dssp HHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEE T ss_pred HHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 99836335767606999728987708999999999999974997543333211101367888999974311687640465 Q ss_pred EECCHHHHHHHHHHHHHHC--C-CCEEEEE Q ss_conf 8511442199999999862--9-9879996 Q gi|254780579|r 124 IVTHDYHMPRTFLELQRIN--S-TVQFIPY 150 (207) Q Consensus 124 LVTs~yHm~RA~~~f~~~~--p-~i~i~~~ 150 (207) ++++++-...++...++.+ | ++.++.+ T Consensus 93 ~~~nd~~a~g~~~~l~~~g~~p~di~iigf 122 (146) T 8abp_A 93 VGMNDSTVLGGVRATEGQGFKAADIIGIGI 122 (146) T ss_dssp ECSSHHHHHHHHHHHHHTTCCGGGEEEEEE T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 322348899878899986435786069984 No 163 >>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} (A:1-142,A:288-339) Probab=24.03 E-value=44 Score=13.79 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=26.4 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC Q ss_conf 68789994698579999999999689982451587 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGV 70 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~ 70 (207) +.|+ ||.|||+.=+..|..|.++|....++-.+. T Consensus 3 ~yDV-IVIGaGpAGl~aA~~la~~G~kV~iIE~~~ 36 (194) T 2a8x_A 3 HYDV-VVLGAGPGGYVAAIRAAQLGLSTAIVEPKY 36 (194) T ss_dssp EEEE-EEECCSHHHHHHHHHHHHTTCCEEEECSSC T ss_pred CCCE-EEECCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 3488-998988899999999996879099996899 No 164 >>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... (A:186-247) Probab=23.98 E-value=44 Score=13.78 Aligned_cols=51 Identities=12% Similarity=-0.095 Sum_probs=37.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCC Q ss_conf 899946985799999999996899824515876546----789999987651588 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDL 89 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i 89 (207) -++|.|||.-=++.|..|.+.|....++-.+..... .-.+...+.+.+.|+ T Consensus 4 ~vvIiG~G~iG~E~A~~l~~~g~~Vtive~~~~il~~~d~~~~~~~~~~l~~~GI 58 (62) T 3dk9_A 4 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGV 58 (62) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC T ss_pred EEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCC T ss_conf 6999899633302200012012344310102211235421110245665412321 No 165 >>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* (G:328-422) Probab=23.81 E-value=45 Score=13.76 Aligned_cols=30 Identities=10% Similarity=-0.221 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHH Q ss_conf 256999999998649981898511442199 Q gi|254780579|r 104 EGNAQEASAWAEKNNFHHVLIVTHDYHMPR 133 (207) Q Consensus 104 ~ena~~~~~~l~~~~~~~iiLVTs~yHm~R 133 (207) .+........++++|..+.+-|+.+||.+. T Consensus 50 ~~~l~~~~~~l~~~g~~~~L~v~~afHs~~ 79 (95) T 2uva_G 50 PISLYGLNLRLRKVKAPTGLDQNRIPFTQR 79 (95) T ss_dssp HHHHHHHHHHHHTTSCCSSCCCTTSCGGGS T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHCCCCCC T ss_conf 899999999999740576322220766667 No 166 >>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} (A:1-122,A:268-335) Probab=23.77 E-value=45 Score=13.76 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=26.7 Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 545687899946985799999999996899824515 Q gi|254780579|r 33 DHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) .....|+ +|.|||+.=+..|..|.+.|..-.|+=. T Consensus 11 ~~~~~DV-iVIGaGpAGl~aA~~la~~G~~V~viE~ 45 (190) T 2a87_A 11 HHPVRDV-IVIGSGPAGYTAALYAARAQLAPLVFEG 45 (190) T ss_dssp CCCCEEE-EEECCHHHHHHHHHHHHHTTCCCEEECC T ss_pred CCCCCCE-EEECCCHHHHHHHHHHHHCCCCEEEECC T ss_conf 7988879-9989879999999999988996899867 No 167 >>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273) Probab=23.71 E-value=45 Score=13.75 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=31.8 Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9999999986499818985114421999999998629--98799964167666754211698999999999999 Q gi|254780579|r 107 AQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINS--TVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLK 178 (207) Q Consensus 107 a~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p--~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K 178 (207) +.+..+.++++|.+-+++-.+--| .=+.-.+++.++ =+.+++.-.+...+-.. -+...++.+.+-|+| T Consensus 63 ~~~~~~~L~~~g~~~IVIACNTAs-a~~ld~Lr~~~~iPiI~iV~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 132 (142) T 2oho_A 63 TWELVNFLLTQNVKMIVFACNTAT-AVAWEEVKAALDIPVLGVVHQKAVEHRFFTT---ANPEIFQEIASIWLK 132 (142) T ss_dssp HHHHHHHHHTTTCSEEEECCHHHH-HHHHHHHHHHCSSCEEESHTCCCCCCEEEES---SCHHHHHHHHHHHTT T ss_pred HHHHHHHHHHCCCCEEEEECCHHH-HHHHHHHHHHCCCCEEEEECCCCCCEEEEEC---CCHHHHHHHHHHHCC T ss_conf 999999998557875999615788-7637877640467646423589866299989---998999999999759 No 168 >>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} (A:1-142,A:285-334) Probab=23.51 E-value=45 Score=13.73 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=26.8 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 456878999469857999999999968998245158 Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) ....|+| |.|||+.=+..|..|.+.|..-.++=.+ T Consensus 3 ~~~yDvi-VIGaGpAGl~aA~~la~~G~kV~iIE~~ 37 (192) T 1lvl_A 3 TIQTTLL-IIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (192) T ss_dssp CEECSEE-EECCSHHHHHHHHHHHHHTCCEEEECSS T ss_pred CCCCCEE-EECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 6528999-9967989999999999788979999489 No 169 >>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} (A:187-366) Probab=23.50 E-value=45 Score=13.73 Aligned_cols=91 Identities=9% Similarity=0.020 Sum_probs=51.2 Q ss_pred CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH-----------HHHHHHHHH Q ss_conf 985799999999996899824515876546789999987651588613322046666602-----------569999999 Q gi|254780579|r 45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTE-----------GNAQEASAW 113 (207) Q Consensus 45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~-----------ena~~~~~~ 113 (207) ...+.+++.+++.++...|.|++.++.......+....+....|+|-..-.......+.. -.-....+. T Consensus 6 ~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv~~t~~~kg~~~~~hp~~~~g~~g~~~~~~~~~~ 85 (180) T 1ozh_A 6 APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRL 85 (180) T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC T ss_conf 99899999999997543986457876545166899999998608971102323676433455434445676564233124 Q ss_pred HHHCCCCEEEEECCHHHHHHHHHH Q ss_conf 986499818985114421999999 Q gi|254780579|r 114 AEKNNFHHVLIVTHDYHMPRTFLE 137 (207) Q Consensus 114 l~~~~~~~iiLVTs~yHm~RA~~~ 137 (207) +++-+ -++.+=..+.-...... T Consensus 86 i~~aD--~il~iG~~~~~~~~~~~ 107 (180) T 1ozh_A 86 LQLAD--LVICIGYSPVEYEPAMW 107 (180) T ss_dssp HHHCS--EEEEESCCGGGSCGGGT T ss_pred CCCCC--EEEECCCCCCCCCCCCC T ss_conf 65020--46663765566676546 No 170 >>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3k7t_A* (X:1-84,X:194-275,X:379-431) Probab=22.96 E-value=46 Score=13.66 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=24.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 99946985799999999996899824515 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) |+|.|||.-=+..|..|.++|....++=. T Consensus 4 ViIIGaG~aGl~aA~~La~~g~~V~iiE~ 32 (219) T 3k7m_X 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEG 32 (219) T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEECS T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99989788999999999878998999978 No 171 >>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} (A:143-270) Probab=22.94 E-value=46 Score=13.66 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=61.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 99946985799999999996899824515876546789999987651588613322046666602569999999986499 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF 119 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~ 119 (207) -+|+|=..+-+..|..+.++-..|.++.--..+...+. ........+....+++-..--+|-+++..+.+.+++.|. T Consensus 15 d~ivg~~~gg~~~a~~la~~l~~p~~~~~k~~~~~~~~---~~~~~~~~~~gk~vlIvDDii~tG~Tl~~~~~~l~~~ga 91 (128) T 1u9y_A 15 PIVLAPDKGALEFAKTASKILNAEYDYLEKTRLSPTEI---QIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGA 91 (128) T ss_dssp CEEEESSGGGHHHHHHHHHHHTCCEEEBC-------------CCBSSCCCTTCCEEEEEEECSSSHHHHHHHHHHHHTTC T ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEE---EEEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCC T ss_conf 68995687603677877761388546774034444202---453112456686699984154133407999999986699 Q ss_pred CEEE-EECCHHHHHHHHHHHHHHC Q ss_conf 8189-8511442199999999862 Q gi|254780579|r 120 HHVL-IVTHDYHMPRTFLELQRIN 142 (207) Q Consensus 120 ~~ii-LVTs~yHm~RA~~~f~~~~ 142 (207) +.+. .|+...+...+...++... T Consensus 92 ~~v~~~v~~~~~~~~~~~~l~~~~ 115 (128) T 1u9y_A 92 KKIIAACVHPVLIGDALNKLYSAG 115 (128) T ss_dssp CSEEEEEEECCCCTTHHHHHHHHT T ss_pred CEEEEEEECCCCCHHHHHHHHHCC T ss_conf 869999989718857999997389 No 172 >>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, thiamin thiazolone diphosphate, inhibitor; HET: TZD; 1.00A {Pseudomonas putida} (A:174-341) Probab=22.89 E-value=47 Score=13.65 Aligned_cols=48 Identities=6% Similarity=-0.032 Sum_probs=33.9 Q ss_pred CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 985799999999996899824515876546789999987651588613 Q gi|254780579|r 45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAEC 92 (207) Q Consensus 45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~ 92 (207) ...+.+++++++.++.+.|.|++.++.......+...++....|++-. T Consensus 12 p~~~~i~~~~~~L~~AkrPvii~G~~~~~~~a~~~l~~la~~~~~pv~ 59 (168) T 1q6z_A 12 LNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVW 59 (168) T ss_dssp CCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEE T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCE T ss_conf 899999999999973758736614543012667678999997358702 No 173 >>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} (A:127-275) Probab=22.85 E-value=47 Score=13.65 Aligned_cols=41 Identities=7% Similarity=-0.160 Sum_probs=28.7 Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC Q ss_conf 76545687899946985799999999996899824515876 Q gi|254780579|r 31 IPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH 71 (207) Q Consensus 31 ~~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~ 71 (207) ..+.++.|.++|.|++..=-..++++.+..-...+.++... T Consensus 13 ~~~~~~g~~Vli~Ga~g~vG~~~~~la~~~g~~vi~~~~~~ 53 (149) T 3gms_A 13 TLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN 53 (149) T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS T ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCC T ss_conf 22245532689840576410011000123543211112332 No 174 >>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:107-247) Probab=22.70 E-value=47 Score=13.63 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=57.3 Q ss_pred HHHHHHH--CCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHH-HEECCCCCCCHHHHHHHHHHHHHH----CCCCEE Q ss_conf 9999996--89982451587654678---9999987651588613-322046666602569999999986----499818 Q gi|254780579|r 53 AFELLEN--QIGEKIFISGVHHSVSK---DILLQKIPIRQDLAEC-CIDIGYKALNTEGNAQEASAWAEK----NNFHHV 122 (207) Q Consensus 53 a~~L~~~--g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~-~I~~e~~s~~T~ena~~~~~~l~~----~~~~~i 122 (207) +-.|.++ |+....+++|....... ..-....+.+.+.... ..........+.+.+....+.+.. ...-.. T Consensus 9 ~~~l~~~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 88 (141) T 3l49_A 9 ALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGA 88 (141) T ss_dssp HHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCE T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE T ss_conf 99999974999779999267555225699999999998789982453352034787689999999999986124676756 Q ss_pred EEECCHHHHHHHHHHHHHHCC-CCEEEEEE Q ss_conf 985114421999999998629-98799964 Q gi|254780579|r 123 LIVTHDYHMPRTFLELQRINS-TVQFIPYP 151 (207) Q Consensus 123 iLVTs~yHm~RA~~~f~~~~p-~i~i~~~p 151 (207) ++++++....-+...+++..| ++.++.+- T Consensus 89 i~~~~d~~a~g~~~al~~~g~~di~ivg~d 118 (141) T 3l49_A 89 IWACWDVPMIGATQALQAAGRTDIRTYGVD 118 (141) T ss_dssp EEESSHHHHHHHHHHHHHTTCCSCEEEEEE T ss_pred EEECCCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 996786789999999998299985799984 No 175 >>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} (A:) Probab=22.11 E-value=48 Score=13.56 Aligned_cols=72 Identities=8% Similarity=-0.044 Sum_probs=36.4 Q ss_pred HHHHHHH----HHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 9999999----996899824515876546789999987651588613322046666602569999999986499818 Q gi|254780579|r 50 IERAFEL----LENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHV 122 (207) Q Consensus 50 i~~a~~L----~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~i 122 (207) +..+++. ++.+....+-+|||.+...-..+...+....+++-..+.++. .....+...+..++.++.|+... T Consensus 32 ~~~~~~~i~~~~~~~~~v~va~SGGkDS~~lL~ll~~l~~~~~~~i~~~~~d~-g~~~~~~~~~~~~~~~~~~i~~~ 107 (325) T 1zun_A 32 EAESIHIIREVAAEFDNPVXLYSIGKDSAVXLHLARKAFFPGKLPFPVXHVDT-RWKFQEXYRFRDQXVEEXGLDLI 107 (325) T ss_dssp HHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECC-SCCCHHHHHHHHHHHHTTTCCEE T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999996698799966768999999999998764089856999668-88508999999999999535650 No 176 >>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} (A:119-300) Probab=22.04 E-value=48 Score=13.55 Aligned_cols=38 Identities=5% Similarity=-0.132 Sum_probs=30.1 Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 65456878999469857999999999968998245158 Q gi|254780579|r 32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) .+.++.|.|+|.|||..=-..++++.+.+.+..+.+.. T Consensus 23 ~~i~~g~~VlI~Ga~~~~G~~aiqla~~~g~~V~~~~~ 60 (182) T 1v3u_A 23 CGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG 60 (182) T ss_dssp SCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECC T ss_conf 35431104750475554103334467634988866258 No 177 >>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} (A:27-201) Probab=22.02 E-value=49 Score=13.55 Aligned_cols=110 Identities=10% Similarity=-0.049 Sum_probs=66.2 Q ss_pred EEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-CCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 994698579999999999689982451587654-6789999987651588613322046666602569999999986499 Q gi|254780579|r 41 VVLTGEPIRIERAFELLENQIGEKIFISGVHHS-VSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF 119 (207) Q Consensus 41 VVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~ 119 (207) ++.|-|. +.+-.+++++...+.++++|..-. ....+..+..+...++ .+..+-....|.++.....+.+++.+. T Consensus 7 i~~G~g~--~~~l~~~l~~~g~~~livt~~~~~~~~~~~~v~~~l~~~~~---~v~~~~~~~~~~~~v~~~~~~~~~~~~ 81 (175) T 1oj7_A 7 ILFGKGA--IAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDV---LEFGGIEPNPAYETLMNAVKLVREQKV 81 (175) T ss_dssp EEESTTG--GGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEE---EEECCCCSSCBHHHHHHHHHHHHHHTC T ss_pred EEECCCH--HHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHCCCCE---EEEECCCCCCCHHHHHHHHHHHHHCCC T ss_conf 7988599--99999998679968999895168775499999998189947---999181379899999999999975499 Q ss_pred CEEEEECCHHHHHHHHHHHHHH-------------------CCCCEEEEEECCCC Q ss_conf 8189851144219999999986-------------------29987999641676 Q gi|254780579|r 120 HHVLIVTHDYHMPRTFLELQRI-------------------NSTVQFIPYPIISH 155 (207) Q Consensus 120 ~~iiLVTs~yHm~RA~~~f~~~-------------------~p~i~i~~~pv~~~ 155 (207) ..|+=|=..-=|=-|+...-.. .+++-++..|+... T Consensus 82 d~iiaiGGGsv~D~aK~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~~ 136 (175) T 1oj7_A 82 TFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA 136 (175) T ss_dssp CEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS T ss_pred CEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 7899717877730788999875087420045654305654467788455656576 No 178 >>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} (B:1-125) Probab=21.97 E-value=49 Score=13.54 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=23.8 Q ss_pred EEC-CCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHH Q ss_conf 220-466666025699999999864--9981898511442 Q gi|254780579|r 94 IDI-GYKALNTEGNAQEASAWAEKN--NFHHVLIVTHDYH 130 (207) Q Consensus 94 I~~-e~~s~~T~ena~~~~~~l~~~--~~~~iiLVTs~yH 130 (207) +++ |+.+.=-.++.....+++++. +.+.+++||++-+ T Consensus 85 lilDEPT~~LD~~~~~~l~~~l~~~~~~~~tviiitHd~e 124 (125) T 1f2t_B 85 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (125) T ss_dssp EEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH T ss_conf 9971886658999999999999999966999999952089 No 179 >>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} (A:1-108,A:254-297) Probab=21.81 E-value=49 Score=13.52 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=25.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 999469857999999999968998245158 Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) ++|.|||..=+..|..|.+.|....++=.+ T Consensus 5 ViIVGaG~aGl~aA~~La~~G~~V~iiEk~ 34 (152) T 3fbs_A 5 VIIIGGSYAGLSAALQLGRARKNILLVDAG 34 (152) T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEECC T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 899998799999999999889978999079 No 180 >>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} (A:362-473,A:625-671) Probab=21.78 E-value=49 Score=13.52 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=26.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 8999469857999999999968998245158 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) -++|.|||+-=+..|..|.+.|....+|=.. T Consensus 14 ~VaVIGaGpAGL~aA~~la~~G~~V~vlEk~ 44 (159) T 1ps9_A 14 NLAVVGAGPAGLAFAINAAARGHQVTLFDAH 44 (159) T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEEESS T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 5999897477899999998721764799421 No 181 >>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:107-223) Probab=21.77 E-value=49 Score=13.51 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=52.1 Q ss_pred HHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH Q ss_conf 999968998245158765467899999876515886133220-4666660256999999998649981898511442199 Q gi|254780579|r 55 ELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDI-GYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPR 133 (207) Q Consensus 55 ~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~-e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~R 133 (207) .|.++|+....+++|..+..+...- +.........+..+.. .....+.-+.......+.....-...+++.++..... T Consensus 11 ~L~~~G~~~i~~i~~~~~~~~~~~~-r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~ 89 (117) T 3jy6_A 11 AFRQQGYQHVVVLTSELELSRTRQE-RYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLE 89 (117) T ss_dssp HHHTTTCCEEEEEEECSTTCHHHHH-HHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHH T ss_pred HHHHCCCCCCEEEECCCCHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHH T ss_conf 2332024300277047100047888-758999998646975323455317899999998764211000011222013443 Q ss_pred HHHHHHHHC---C-CCEEEEE Q ss_conf 999999862---9-9879996 Q gi|254780579|r 134 TFLELQRIN---S-TVQFIPY 150 (207) Q Consensus 134 A~~~f~~~~---p-~i~i~~~ 150 (207) ++..++..+ | ++.++.+ T Consensus 90 ~l~~~~~~g~~iP~di~ivgf 110 (117) T 3jy6_A 90 FFPNLIISGLIDNQTVTATGF 110 (117) T ss_dssp HSHHHHHSSSCCSSSEEEEEB T ss_pred HHHHHHHHHCCCCCCCCCCCC T ss_conf 345666652257763112466 No 182 >>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:178-284,A:444-522) Probab=21.75 E-value=49 Score=13.51 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=27.3 Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 7899946985799999999996899824515 Q gi|254780579|r 38 SAIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 38 DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) --|+|.|||.-=+..|..|.++|+...++.. T Consensus 11 ~~VaIiGaGpaGl~aA~~L~~~G~~~v~~~e 41 (186) T 1gte_A 11 AKIALLGAGPASISCASFLARLGYSDITIFE 41 (186) T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEE T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 9699989219999999999848997499994 No 183 >>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 1zpd_A* (A:181-357) Probab=21.74 E-value=49 Score=13.51 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=35.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHH Q ss_conf 9857999999999968998245158765467899999876515886133 Q gi|254780579|r 45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC 93 (207) Q Consensus 45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~ 93 (207) ...+.+.+++++.++...|.|++.++.......+....+....|+|-.+ T Consensus 14 ~~~~~i~~~~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~g~Pv~~ 62 (177) T 2wvg_A 14 SLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVAT 62 (177) T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEE T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 6799999999998617687685167634202699999999875888014 No 184 >>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} (A:1-233) Probab=21.45 E-value=50 Score=13.47 Aligned_cols=55 Identities=5% Similarity=-0.121 Sum_probs=34.0 Q ss_pred HHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 3322046666602569999999986499818985114421999999998629987999641676 Q gi|254780579|r 92 CCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207) Q Consensus 92 ~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207) +.+++-..+..| .+.....++++++|. .++.+|+..+.+=+ +.+ |+ .+.+|+... T Consensus 142 dlvI~iS~sG~t-~~~~~~~~~ak~~g~-~vI~IT~~~~s~l~----~~a--d~-~l~~~~~~e 196 (233) T 1nri_A 142 DVLVGIAASGRT-PYVIAGLQYAKSLGA-LTISIASNPKSEXA----EIA--DI-AIETIVGPE 196 (233) T ss_dssp SEEEEECTTSCC-HHHHHHHHHHHHHTC-EEEEEESSTTCHHH----HHS--SE-EEECCCCSC T ss_pred CEEEEEECCCCC-HHHHHHHHHHHHCCC-CEEEEECCCCCHHH----HHC--CE-EEECCCCCC T ss_conf 848998689997-778989999875166-25666348874356----858--98-886898877 No 185 >>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} (A:159-268) Probab=21.32 E-value=50 Score=13.46 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=40.9 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC--CCCCHHHHHHHHHHHCCCC Q ss_conf 5687899946985799999999996899824515876--5467899999876515886 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH--HSVSKDILLQKIPIRQDLA 90 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~--~~~~~~~~~~~~~~~~~i~ 90 (207) ....-++|.|||.-=++.|..|.+.|..-.++..+.. +.....++.+......++. T Consensus 12 ~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~i~~~~~~~~~~~~~~~~~~v~ 69 (110) T 3l8k_A 12 KLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN 69 (110) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCC T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHEE T ss_conf 0798899999889999999998618978998641012244433113455554443100 No 186 >>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} (A:187-322,A:469-521) Probab=21.28 E-value=50 Score=13.45 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=26.0 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 6878999469857999999999968998245158 Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) ..| +||.|||+.=+..|..|.+.|....++=.+ T Consensus 26 ~yD-ViVIGaGpAGl~aA~~lar~G~kV~viE~~ 58 (189) T 1hyu_A 26 AYD-VLIVGSGPAGAAAAVYSARKGIRTGLMGER 58 (189) T ss_dssp CEE-EEEECCSHHHHHHHHHHHHTTCCEEEECSS T ss_pred CCC-EEEECCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 885-899967899999999999789988999816 No 187 >>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} (A:1-152,A:296-346) Probab=20.74 E-value=52 Score=13.38 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=24.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 87899946985799999999996899824515 Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) .|+ +|.|||+.=+..|..+.++|....++=- T Consensus 3 yDv-iIIG~GpaGl~aA~~aa~~G~kV~iiE~ 33 (203) T 1xdi_A 3 TRI-VILGGGPAGYEAALVAATSHPETTQVTV 33 (203) T ss_dssp EEE-EEECCSHHHHHHHHHHHHHCTTTEEEEE T ss_pred CCE-EEECCCHHHHHHHHHHHHCCCCCCEEEE T ss_conf 888-9987888999999999856868898999 No 188 >>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} (A:1-193,A:392-447) Probab=20.71 E-value=52 Score=13.38 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=26.7 Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC Q ss_conf 5456878999469857999999999968998245158 Q gi|254780579|r 33 DHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207) Q Consensus 33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207) ...+.|+ +|.|||.-=+..|+.|.++|....|+=.+ T Consensus 23 ~~~~~DV-iIIGaG~aGL~aA~~La~~G~~V~ilE~~ 58 (249) T 2i0z_A 23 NAMHYDV-IVIGGGPSGLMAAIGAAEEGANVLLLDKG 58 (249) T ss_dssp --CCCSE-EEECCSHHHHHHHHHHHHTTCCEEEECSS T ss_pred CCCCCCE-EEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 7773396-99896799999999999789988999689 No 189 >>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} (A:152-266) Probab=20.67 E-value=52 Score=13.37 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=40.0 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC--C--CCHHHHHHHHHHHCCCC Q ss_conf 56878999469857999999999968998245158765--4--67899999876515886 Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH--S--VSKDILLQKIPIRQDLA 90 (207) Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~--~--~~~~~~~~~~~~~~~i~ 90 (207) ....-++|+|||.-=++.|..|.+.|....++..+..- . ..-.+.....+.+.|+. T Consensus 17 ~~~k~vvIiGgG~ig~E~a~~l~~~g~~vtlv~~~~~i~~~~d~~~~~~~~~~l~~~gV~ 76 (115) T 1ebd_A 17 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVE 76 (115) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCE T ss_pred HCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEE T ss_conf 669978999997148889999963595550000366334455789999999998626849 No 190 >>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} (A:187-356) Probab=20.59 E-value=52 Score=13.36 Aligned_cols=110 Identities=12% Similarity=0.010 Sum_probs=61.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE-----C-CCCCC--CHH------ Q ss_conf 899946985799999999996899824515876546789999987651588613322-----0-46666--602------ Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID-----I-GYKAL--NTE------ 104 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~-----~-e~~s~--~T~------ 104 (207) ......+..+.+++++++.++...|.|++.++.......+..+++....+++-.... + +.... .++ T Consensus 9 ~~~~~~~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~~~pv~~t~~~kg~~~~~~p~~~G~~~~~~~G 88 (170) T 2iht_A 9 VGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYXDG 88 (170) T ss_dssp BEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCC T ss_conf 34421000567899999998564652013212234323799999999979898973146654357852455443330113 Q ss_pred -HHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf -5699999999864998189851---1442199999999862998799964167 Q gi|254780579|r 105 -GNAQEASAWAEKNNFHHVLIVT---HDYHMPRTFLELQRINSTVQFIPYPIIS 154 (207) Q Consensus 105 -ena~~~~~~l~~~~~~~iiLVT---s~yHm~RA~~~f~~~~p~i~i~~~pv~~ 154 (207) -....+.+.+++-+ -++.+= +.+++... ....++.+++...... T Consensus 89 ~~~~~~~~~~l~~aD--lil~iG~~~~~~~~~~~----~~~~~~~~~i~i~~d~ 136 (170) T 2iht_A 89 ILNFPALQTXFAPVD--LVLTVGYDYAEDLRPSX----WQKGIEKKTVRISPTV 136 (170) T ss_dssp HHTSCHHHHHHTTCC--EEEEETCCGGGCCCHHH----HCCSSCCEEEEEESSC T ss_pred CCCCHHHHHHHCCCC--CEEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCC T ss_conf 322478998734434--30000245312466542----2245532100012223 No 191 >>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8} (A:58-227) Probab=20.59 E-value=52 Score=13.36 Aligned_cols=113 Identities=16% Similarity=0.051 Sum_probs=56.5 Q ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHHCCC------------CCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECC Q ss_conf 654568789994698-5799999999996899------------824-51587654678999998765158861332204 Q gi|254780579|r 32 PDHPSVSAIVVLTGE-PIRIERAFELLENQIG------------EKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIG 97 (207) Q Consensus 32 ~~~~~~DaIVVLgGg-~~Ri~~a~~L~~~g~~------------~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e 97 (207) ...++.|.||++|=| ..=-..++.-.-++.. +++ +.+..+ .......+......+.-++.- T Consensus 16 ~~i~~~~~vv~iG~GgS~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~d-----~~~~~~~l~~l~~~~tl~i~i 90 (170) T 2q8n_A 16 DWIINFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVD-----PDLMSSVLDRIDPKTTLFNVI 90 (170) T ss_dssp HHHTTCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSCTTTTTTCCEEEEECSCC-----HHHHHHHHTTCCGGGEEEEEE T ss_pred HHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCC-----HHHHHHHHHCCCCCCEEEEEE T ss_conf 997289989998314188999999999633210112245405885599980889-----899999970037534189996 Q ss_pred CCCCCHHH---HHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 66666025---69999999986499---818985114421999999998629987999641 Q gi|254780579|r 98 YKALNTEG---NAQEASAWAEKNNF---HHVLIVTHDYHMPRTFLELQRINSTVQFIPYPI 152 (207) Q Consensus 98 ~~s~~T~e---na~~~~~~l~~~~~---~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv 152 (207) .+|-+|.| |++..++++++.+. ++++.||++--..-+... ++. +......|. T Consensus 91 SkSG~T~Etl~~~~~~~~~~~~~~~~~~~~~v~iT~~~~~~~~~~~-~~~--~~~~~~~~~ 148 (170) T 2q8n_A 91 SKSGSTAEVMATYSIARGILEAYGLDPREHMLITTDPEKGFLRKLV-KEE--GFRSLEVPP 148 (170) T ss_dssp CSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEECSSSSHHHHHH-HHH--TCEEEECCT T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH-HHH--HHHHHHCCC T ss_conf 5888736799889999999997386477778871353157777677-887--577763355 No 192 >>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} (A:184-247) Probab=20.56 E-value=52 Score=13.36 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=37.0 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC----CCCHHHHHHHHHHHCCC Q ss_conf 878999469857999999999968998245158765----46789999987651588 Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH----SVSKDILLQKIPIRQDL 89 (207) Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~----~~~~~~~~~~~~~~~~i 89 (207) +.-++|.|||.-=++.|-.|.+.|..-.++-.+... .....+...+.+.+.|+ T Consensus 2 pk~v~ViG~G~iGlE~A~~l~~~g~~Vtiie~~~~il~~~d~~~~~~~~~~l~~~gv 58 (64) T 2hqm_A 2 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGI 58 (64) T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 767999898878999999999649842553001244433303443345554442010 No 193 >>2wjw_A Glutamate receptor 2; transport protein, postsynaptic cell membrane, GLUR2, synapse, membrane, palmitate, synaptic plasticity, alternative splicing; HET: NAG; 1.80A {Homo sapiens} PDB: 2wjx_A 3h5v_A* 3h5w_A (A:107-241,A:343-388) Probab=20.38 E-value=52 Score=13.34 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=62.2 Q ss_pred HHHHH-HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 99999-68998245158765467899999876515886133220-46666602569999999986499818985114421 Q gi|254780579|r 54 FELLE-NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDI-GYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM 131 (207) Q Consensus 54 ~~L~~-~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~-e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm 131 (207) ++|.+ -++....++...+.+....+.+...+...++.-..... .....++.++.....+-+++.+.+.+++.++...+ T Consensus 7 ~~LL~~f~W~~v~vIyd~d~g~~~l~~l~~~~~~~~i~V~~~~~~~~~~~~~~~~~~~~L~~i~~s~~rvIIl~~~~~~~ 86 (181) T 2wjw_A 7 LSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKV 86 (181) T ss_dssp HHHHHHTTCCEEEEEECTTSCSHHHHHHHHHHHHHTCEEEEEECCCCCSSTHHHHTHHHHHHHHHTTCCEEEEESCHHHH T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHH T ss_conf 99999849967999981452222477899999970884999997435787417789999998660588589998056898 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999862 Q gi|254780579|r 132 PRTFLELQRIN 142 (207) Q Consensus 132 ~RA~~~f~~~~ 142 (207) ++-+....... T Consensus 87 ~~iL~~a~~~g 97 (181) T 2wjw_A 87 NDIVDQVITIG 97 (181) T ss_dssp HHHHHHHHHTT T ss_pred HHHHHHHHHHC T ss_conf 88899999847 No 194 >>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open active site loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* (A:199-361) Probab=20.32 E-value=53 Score=13.33 Aligned_cols=80 Identities=8% Similarity=0.116 Sum_probs=45.9 Q ss_pred CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE-----CCCCC---CCHH-H--HHHHHHHH Q ss_conf 985799999999996899824515876546789999987651588613322-----04666---6602-5--69999999 Q gi|254780579|r 45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID-----IGYKA---LNTE-G--NAQEASAW 113 (207) Q Consensus 45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~-----~e~~s---~~T~-e--na~~~~~~ 113 (207) +..+.++.++++.++...|.|++.++.......+..+.+....+++-..-. +++.. ..++ . .-...++. T Consensus 9 ~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~g~pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~ 88 (163) T 2nxw_A 9 ALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRL 88 (163) T ss_dssp HHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC T ss_conf 36899999999987501122210011344333431000023334322334210011235530000112565431111012 Q ss_pred HHHCCCCEEEEEC Q ss_conf 9864998189851 Q gi|254780579|r 114 AEKNNFHHVLIVT 126 (207) Q Consensus 114 l~~~~~~~iiLVT 126 (207) +++-+ =++.+= T Consensus 89 ~~~aD--lvl~iG 99 (163) T 2nxw_A 89 VEESD--GLFLLG 99 (163) T ss_dssp HHTCS--EEEEES T ss_pred CCCCC--CCEEEC T ss_conf 45565--213653 No 195 >>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:1-93) Probab=20.21 E-value=53 Score=13.31 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=22.1 Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCCEEC Q ss_conf 545687899946985799999999996-89982451 Q gi|254780579|r 33 DHPSVSAIVVLTGEPIRIERAFELLEN-QIGEKIFI 67 (207) Q Consensus 33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~-g~~~~ii~ 67 (207) ....+|.|||+||+ +-+..|++.+.. ...++++- T Consensus 32 ~~~~~D~vi~iGGD-GT~L~a~~~~~~~~~~~pv~g 66 (93) T 2i2c_A 32 DDVEPEIVISIGGD-GTFLSAFHQYEERLDEIAFIG 66 (93) T ss_dssp CSSSCSEEEEEESH-HHHHHHHHHTGGGTTTCEEEE T ss_pred CCCCCCEEEEECCH-HHHHHHHHHHHHCCCCCEEEE T ss_conf 78899899998972-999999998655158974998 No 196 >>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* (A:) Probab=20.07 E-value=53 Score=13.30 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=25.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 899946985799999999996899824515 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) =++|.|||..=+..|..|.++|....++=. T Consensus 41 ~VvVIGaG~aGL~AA~~L~~~G~~V~vlE~ 70 (495) T 2vvm_A 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEA 70 (495) T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECS T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 489989589999999999868998899925 No 197 >>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:244-449) Probab=20.03 E-value=53 Score=13.29 Aligned_cols=90 Identities=6% Similarity=-0.173 Sum_probs=49.7 Q ss_pred CCCCEEEEECCCHHH--HH-HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH Q ss_conf 568789994698579--99-999999968998245158765467899999876515886133220466666025699999 Q gi|254780579|r 35 PSVSAIVVLTGEPIR--IE-RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS 111 (207) Q Consensus 35 ~~~DaIVVLgGg~~R--i~-~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~ 111 (207) .+++-|.+.|-|..- .. .+..|.+.|.....+..+ ..+..... .--+++.++.-..|..|. +...+. T Consensus 47 ~~a~~I~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~--------~~~~~~~~-~~~~~dlvI~iS~sG~t~-~~~~~~ 116 (206) T 2bpl_A 47 SKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIA--------SEFRYRKS-AVRRNSLMITLSQSGETA-DTLAGL 116 (206) T ss_dssp HHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEEEEH--------HHHTTSCC-CCCTTEEEEEEESSSCCH-HHHHHH T ss_pred HHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC--------CCCCCCCC-CCCCCCEEEEECCCCCHH-HHHHHH T ss_conf 32113589985654778999999999970987499974--------01311245-568985899973788738-899999 Q ss_pred HHHHHCCCCEEEEECCHHHHHHH Q ss_conf 99986499818985114421999 Q gi|254780579|r 112 AWAEKNNFHHVLIVTHDYHMPRT 134 (207) Q Consensus 112 ~~l~~~~~~~iiLVTs~yHm~RA 134 (207) +.+++.|...++++|+..+.+=+ T Consensus 117 ~~ak~~g~~~vi~iT~~~~s~l~ 139 (206) T 2bpl_A 117 RLSKELGYLGSLAICNVPGSSLV 139 (206) T ss_dssp HHHHHTTCSEEEEEESSTTCHHH T ss_pred HHHHHCCCCEEEEEECCCCCHHH T ss_conf 98875387559999746997787 No 198 >>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} (A:1-131,A:255-332) Probab=20.03 E-value=53 Score=13.29 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=24.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECC Q ss_conf 899946985799999999996899824515 Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207) Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207) -|||+|||.-=+..|.+|-+.++.-.|.+- T Consensus 5 kIvIIGaG~aG~~aA~~lr~~~~~~~Itvi 34 (209) T 3iwa_A 5 HVVVIGAVALGPKAACRFKRLDPEAHVTMI 34 (209) T ss_dssp EEEEECCSSHHHHHHHHHHHHCTTSEEEEE T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEE T ss_conf 999989889999999999807989838999 Done!