Query         gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 207
No_of_seqs    147 out of 1321
Neff          7.2 
Searched_HMMs 33803
Date          Wed Jun  1 18:42:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780579.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ca8_A Protein YDCF; two doma  99.9 2.2E-27 6.4E-32  187.1  12.3  123   32-154     1-148 (151)
  2 >2cxn_A Glucose-6-phosphate is  93.2    0.44 1.3E-05   26.1   7.1  109   32-151    42-165 (187)
  3 >2wu8_A Glucose-6-phosphate is  92.4    0.74 2.2E-05   24.7   7.3  110   32-151    46-168 (190)
  4 >3hjb_A Glucose-6-phosphate is  92.4    0.69   2E-05   24.9   7.1  111   31-151    41-164 (186)
  5 >2o2c_A GPI, glucose-6-phospha  90.3     0.7 2.1E-05   24.8   5.4  120   21-151    12-153 (175)
  6 >1t10_A GPI, glucose-6-phospha  89.3    0.56 1.7E-05   25.4   4.3   96   32-132    25-139 (175)
  7 >1t35_A Hypothetical protein Y  86.3     1.9 5.6E-05   22.2   5.5   16  100-115   107-122 (191)
  8 >2zj3_A Glucosamine--fructose-  86.3     2.2 6.6E-05   21.7   6.6   91   35-134    13-106 (159)
  9 >3gh1_A Predicted nucleotide-b  85.2     2.5 7.4E-05   21.4   6.4   94   36-129    64-208 (380)
 10 >1ydh_A AT5G11950; structural   81.8     3.5  0.0001   20.6   5.4   35   95-129   110-146 (216)
 11 >3knz_A Putative sugar binding  81.5     3.6 0.00011   20.5   5.6   85   48-134     3-106 (149)
 12 >1byk_A Protein (trehalose ope  81.3     3.6 0.00011   20.4   6.4   94   53-151     9-107 (125)
 13 >2a33_A Hypothetical protein;   81.2     3.7 0.00011   20.4   6.1   36   94-129   113-150 (215)
 14 >1zzg_A Glucose-6-phosphate is  80.4     3.9 0.00011   20.3   8.4  111   33-151    20-139 (162)
 15 >3d8u_A PURR transcriptional r  79.1     4.3 0.00013   20.0  10.1   99   52-150     9-114 (121)
 16 >3dmp_A Uracil phosphoribosylt  78.8     4.4 0.00013   19.9   5.5  112   40-155    82-194 (217)
 17 >3i09_A Periplasmic branched-c  78.7     3.2 9.4E-05   20.8   4.2   35  102-136     1-35  (191)
 18 >3gv0_A Transcriptional regula  75.7     5.4 0.00016   19.4   9.1   99   53-151     9-114 (132)
 19 >1tjy_A Sugar transport protei  74.8     5.6 0.00017   19.3   8.5   98   53-150    13-114 (151)
 20 >1rcu_A Conserved hypothetical  73.6     6.1 0.00018   19.1   5.9   76   37-113    57-141 (195)
 21 >3egc_A Putative ribose operon  72.5     6.4 0.00019   18.9   9.5  100   52-151     8-114 (132)
 22 >3hcw_A Maltose operon transcr  72.0     6.6  0.0002   18.8   8.4  100   52-151     8-114 (132)
 23 >3ff1_A Glucose-6-phosphate is  70.7     7.1 0.00021   18.7   9.2  111   35-151    25-150 (173)
 24 >1moq_A Glucosamine 6-phosphat  70.6     7.1 0.00021   18.7   4.7   91   35-135    50-143 (210)
 25 >1moq_A Glucosamine 6-phosphat  69.7     7.4 0.00022   18.5   5.7   89   35-132    12-103 (158)
 26 >2bpl_A Glucosamine--fructose-  69.4     7.5 0.00022   18.5   5.3   91   33-132    11-104 (159)
 27 >1bd3_D Uprtase, uracil phosph  68.7     7.2 0.00021   18.6   4.0  112   42-155   109-221 (243)
 28 >1ou0_A Precorrin-8X methylmut  68.5     7.9 0.00023   18.4   5.5   68   36-104   127-194 (207)
 29 >3g85_A Transcriptional regula  68.1       8 0.00024   18.3   9.6   99   53-151     9-114 (134)
 30 >3khd_A Pyruvate kinase; malar  67.3     8.3 0.00025   18.2   8.4   87   34-131    18-107 (122)
 31 >3kjx_A Transcriptional regula  66.4     8.7 0.00026   18.1  11.5   99   52-150     8-114 (132)
 32 >2o20_A Catabolite control pro  66.1     8.8 0.00026   18.1  10.4   97   53-151     9-112 (130)
 33 >1vim_A Hypothetical protein A  65.5       9 0.00027   18.0   7.1   95   50-155    37-145 (200)
 34 >3h5o_A Transcriptional regula  64.7     9.3 0.00028   17.9  10.2   98   53-150     9-113 (132)
 35 >3hqn_D Pyruvate kinase, PK; T  63.4     9.9 0.00029   17.8   7.4   87   35-129    33-125 (140)
 36 >1vr9_A CBS domain protein/ACT  62.9      10  0.0003   17.7   4.5   84   49-132    11-98  (134)
 37 >2pl5_A Homoserine O-acetyltra  62.9      10  0.0003   17.7   5.7   91   56-153   137-235 (260)
 38 >3k9c_A Transcriptional regula  62.1      10 0.00031   17.6  11.7   98   53-151     9-112 (130)
 39 >3gg8_A Pyruvate kinase; malar  61.4      11 0.00032   17.6   8.2   88   34-132    34-124 (138)
 40 >1o94_A Tmadh, trimethylamine   61.3      11 0.00032   17.5   4.5   97   34-136    13-124 (195)
 41 >1b0z_A Protein (phosphoglucos  61.1      11 0.00032   17.5   7.4  109   35-152    25-152 (174)
 42 >2vxo_A GMP synthase [glutamin  60.8      11 0.00033   17.5   4.9   54   38-91     25-81  (229)
 43 >3ctp_A Periplasmic binding pr  58.8      12 0.00035   17.3   5.4   96   53-150     9-111 (130)
 44 >3i45_A Twin-arginine transloc  58.2      12 0.00036   17.2   4.9   90   52-142     8-99  (200)
 45 >2fqx_A Membrane lipoprotein T  57.9      12 0.00037   17.2  11.5   98   53-151    12-114 (137)
 46 >3k4h_A Putative transcription  57.2      13 0.00038   17.1  10.2   97   53-150     9-113 (132)
 47 >1d5t_A Guanine nucleotide dis  55.6      14  0.0004   16.9   5.9   52   39-90      8-59  (135)
 48 >2r9v_A ATP synthase subunit a  55.2      14 0.00041   16.9   7.9   96   47-142    82-184 (276)
 49 >3g1w_A Sugar ABC transporter;  54.7      14 0.00041   16.9   9.3   99   53-151     9-113 (134)
 50 >3bq9_A Predicted rossmann fol  54.6      14 0.00041   16.9   6.9   93   37-129    58-203 (375)
 51 >1v9s_A Uracil phosphoribosylt  54.5      14 0.00042   16.8   3.8  112   40-155    74-186 (208)
 52 >3gyb_A Transcriptional regula  54.1      14 0.00042   16.8  10.7   98   53-151     9-111 (129)
 53 >2d13_A Hypothetical protein P  53.1      15 0.00044   16.7   8.2  108   36-148     4-120 (124)
 54 >2fn9_A Ribose ABC transporter  52.9      15 0.00044   16.7   6.0   91   59-150    23-117 (140)
 55 >2h0a_A TTHA0807, transcriptio  52.3      15 0.00045   16.6   8.3   98   53-150     8-117 (134)
 56 >2fvy_A D-galactose-binding pe  52.3      15 0.00045   16.6   5.2   94   56-150    23-123 (145)
 57 >2rgy_A Transcriptional regula  51.8      16 0.00046   16.6  11.4   99   53-151    10-115 (133)
 58 >1k0i_A P-hydroxybenzoate hydr  50.7      16 0.00048   16.5   4.9   52   39-90      4-56  (103)
 59 >1jye_A Lactose operon repress  50.2      16 0.00049   16.4   9.6   97   52-150     8-111 (130)
 60 >2poc_A D-fructose-6-, isomera  50.1      17 0.00049   16.4   6.5   89   33-130    12-103 (161)
 61 >3cvj_A Putative phosphoheptos  50.1      17 0.00049   16.4   4.7   43   90-134   108-150 (243)
 62 >3clk_A Transcription regulato  48.7      17 0.00052   16.3  10.8   97   54-151    10-113 (131)
 63 >3hs3_A Ribose operon represso  48.1      18 0.00053   16.2   5.3   95   51-150     6-107 (126)
 64 >2ioy_A Periplasmic sugar-bind  47.7      18 0.00053   16.2  10.0   98   53-151     9-112 (133)
 65 >2yva_A DNAA initiator-associa  47.3      18 0.00054   16.1   6.7   97   35-134    39-151 (196)
 66 >1jeo_A MJ1247, hypothetical p  46.2      19 0.00056   16.0   6.9   97   49-158    29-140 (180)
 67 >2afr_A Cobalamin biosynthesis  46.1      19 0.00057   16.0   5.2   68   37-105   133-206 (231)
 68 >2cun_A Phosphoglycerate kinas  46.0      19 0.00057   16.0   4.1   32   39-70      4-37  (202)
 69 >3eua_A Putative fructose-amin  45.8      19 0.00057   16.0   5.8   59   90-157    74-132 (155)
 70 >2gag_B Heterotetrameric sarco  45.8      19 0.00057   16.0   6.3   52   39-90     23-78  (199)
 71 >3ksm_A ABC-type sugar transpo  45.7      19 0.00057   16.0   7.5   98   52-151    11-115 (136)
 72 >3fxa_A SIS domain protein; YP  45.1      20 0.00058   15.9   6.4   60   90-158    92-151 (201)
 73 >3brq_A HTH-type transcription  45.0      20 0.00059   15.9  10.6   98   53-151    10-115 (133)
 74 >3dbi_A Sugar-binding transcri  45.0      20 0.00059   15.9  11.1   99   53-151    10-115 (133)
 75 >3ef6_A Toluene 1,2-dioxygenas  44.4      19 0.00056   16.1   2.8   30   39-68      4-33  (177)
 76 >2hsg_A Glucose-resistance amy  44.1      21 0.00061   15.8   7.8   98   53-150    10-115 (134)
 77 >1f2v_A COBH, precorrin-8X met  43.6      21 0.00062   15.8   5.9   68   36-104   137-206 (219)
 78 >2e28_A Pyruvate kinase, PK; a  43.5      21 0.00062   15.8   8.3   83   34-128    32-118 (136)
 79 >3fg2_P Putative rubredoxin re  43.0      21 0.00063   15.7   4.9   31   39-69      3-33  (177)
 80 >3a1c_A Probable copper-export  42.7      19 0.00057   16.0   2.6   28  101-129    40-67  (165)
 81 >1v9c_A Precorrin-8X methyl mu  41.8      22 0.00066   15.6   4.6   53   38-91    128-180 (218)
 82 >2af4_C Phosphate acetyltransf  41.4      23 0.00067   15.6   7.7   56   39-101    18-74  (174)
 83 >1m3s_A Hypothetical protein Y  40.9      23 0.00068   15.5   7.2   83   48-134    25-121 (186)
 84 >3lm7_A Putative 4-hydroxy-2-o  40.7      23 0.00069   15.5   5.0   69   49-122   146-216 (249)
 85 >1qpz_A PURA, protein (purine   40.4      23 0.00069   15.5  11.0   98   53-151     9-114 (132)
 86 >3gr4_A Pyruvate kinase isozym  39.9      24 0.00071   15.4   6.3   85   35-129    19-111 (127)
 87 >1tk9_A Phosphoheptose isomera  39.8      24 0.00071   15.4   7.5  111   35-155    40-166 (188)
 88 >2fep_A Catabolite control pro  39.8      24 0.00071   15.4   9.6  100   52-151     8-115 (133)
 89 >1uta_A FTSN, MSGA, cell divis  38.7      25 0.00074   15.3   3.4   56   71-128    17-80  (81)
 90 >1a3w_A Pyruvate kinase; allos  38.6      25 0.00074   15.3   6.8   85   35-127    33-124 (140)
 91 >1lvl_A Dihydrolipoamide dehyd  38.4      25 0.00074   15.3   6.0   56   34-89     16-75  (112)
 92 >2iz6_A Molybdenum cofactor ca  38.0      26 0.00076   15.3   4.2   12  100-111   117-128 (176)
 93 >1fcd_A Flavocytochrome C sulf  37.9      26 0.00076   15.2   4.3   31   39-69      4-34  (150)
 94 >3ics_A Coenzyme A-disulfide r  37.8      26 0.00076   15.2   5.0   36   35-70     34-69  (221)
 95 >3fiu_A NH(3)-dependent NAD(+)  37.7      26 0.00076   15.2   5.0   62   34-95     27-89  (249)
 96 >3dme_A Conserved exported pro  37.1      26 0.00078   15.2   5.6   51   39-89      6-59  (161)
 97 >3dty_A Oxidoreductase, GFO/ID  36.6      27  0.0008   15.1   6.6   68   94-186   112-179 (226)
 98 >2aqj_A Tryptophan halogenase,  36.5      27  0.0008   15.1   5.5   55   36-90      4-61  (273)
 99 >1yqz_A Coenzyme A disulfide r  36.5      27  0.0008   15.1   5.7   56   35-90     24-83  (115)
100 >2a67_A Isochorismatase family  36.4      27  0.0008   15.1   3.0  101   48-151    31-133 (167)
101 >3huu_A Transcription regulato  36.4      27  0.0008   15.1   6.5   95   53-150     9-110 (129)
102 >1u0t_A Inorganic polyphosphat  36.0      27 0.00081   15.1   3.7   37   33-70     72-108 (149)
103 >1ydw_A AX110P-like protein; s  36.0      28 0.00081   15.1   7.5   79   75-165    83-163 (191)
104 >2iks_A DNA-binding transcript  35.9      28 0.00082   15.1   8.7   96   53-150     9-111 (130)
105 >1tzb_A Glucose-6-phosphate is  35.9      28 0.00082   15.0   5.1   37   93-131    66-102 (144)
106 >3cs3_A Sugar-binding transcri  35.6      28 0.00083   15.0   6.3   94   53-149     9-110 (130)
107 >3jyn_A Quinone oxidoreductase  35.1      28 0.00084   15.0   4.7  106   34-155     2-107 (132)
108 >1jq5_A Glycerol dehydrogenase  35.0      28 0.00084   15.0   7.6  109   40-154    12-120 (163)
109 >2pn1_A Carbamoylphosphate syn  34.5      29 0.00086   14.9   4.1   43  104-149    58-103 (104)
110 >2c31_A Oxalyl-COA decarboxyla  33.9      24  0.0007   15.4   1.9   48   44-91      4-51  (179)
111 >1dbq_A Purine repressor; tran  33.9      30 0.00088   14.8  11.1   98   53-151     9-114 (132)
112 >3fg2_P Putative rubredoxin re  33.0      31 0.00091   14.8   5.7   55   35-89     24-83  (121)
113 >2qe7_A ATP synthase subunit a  32.9      31 0.00091   14.7   8.4   97   46-142    81-184 (275)
114 >1jx6_A LUXP protein; protein-  32.8      31 0.00092   14.7   8.8   97   53-150     8-110 (133)
115 >3e7d_A COBH, precorrin-8X met  32.7      31 0.00092   14.7   5.9   69   36-105   130-200 (212)
116 >2pff_B Fatty acid synthase su  32.7      31 0.00092   14.7   4.0   30  103-132    49-78  (95)
117 >1dxl_A Dihydrolipoamide dehyd  32.7      31 0.00092   14.7   6.2   57   34-90     17-77  (118)
118 >2b9w_A Putative aminooxidase;  31.8      32 0.00095   14.6   4.2   33   35-68      5-37  (191)
119 >2v3a_A Rubredoxin reductase;   31.6      32 0.00096   14.6   3.6   31   39-69      6-37  (172)
120 >3cf4_G Acetyl-COA decarbonyla  31.6      32 0.00096   14.6   2.7  130   45-176    19-166 (170)
121 >2q28_A Oxalyl-COA decarboxyla  31.3      24  0.0007   15.5   1.6   47   45-91      5-51  (177)
122 >3jvd_A Transcriptional regula  30.9      33 0.00098   14.5   8.9   95   53-151     9-110 (128)
123 >2qae_A Lipoamide, dihydrolipo  30.9      33 0.00099   14.5   4.0   57   34-90     17-78  (118)
124 >3c1a_A Putative oxidoreductas  30.8      33 0.00099   14.5   7.9   56   82-142    87-146 (170)
125 >2eih_A Alcohol dehydrogenase;  30.5      34   0.001   14.5   5.3   38   32-69     14-51  (145)
126 >3cty_A Thioredoxin reductase;  30.3      34   0.001   14.5   4.2   51   37-89     21-71  (114)
127 >1nhp_A NADH peroxidase; oxido  30.2      34   0.001   14.5   4.3   30   40-69      3-32  (160)
128 >2rgh_A Alpha-glycerophosphate  30.1      34   0.001   14.5   6.1   52   39-90     34-87  (200)
129 >1wek_A Hypothetical protein T  30.1      34   0.001   14.5   4.8   44   94-137   119-164 (201)
130 >1pea_A Amidase operon; gene r  29.9      35   0.001   14.4   5.2   90   52-142     4-95  (179)
131 >1i5e_A Uracil phosphoribosylt  29.8      35   0.001   14.4   2.8   68   87-155    59-126 (148)
132 >1xa0_A Putative NADPH depende  29.7      35   0.001   14.4   6.1   41   31-71     23-63  (172)
133 >3lad_A Dihydrolipoamide dehyd  29.6      35   0.001   14.4   3.9   33   35-68      2-34  (122)
134 >2oln_A NIKD protein; flavopro  29.5      35   0.001   14.4   6.1   53   37-90      5-58  (168)
135 >2pfu_A Biopolymer transport E  29.1      36  0.0011   14.4   2.8   55   74-128    39-94  (99)
136 >1wd5_A Hypothetical protein T  28.7     5.4 0.00016   19.4  -2.1   65   85-153   114-178 (208)
137 >2qcu_A Aerobic glycerol-3-pho  28.7      36  0.0011   14.3   6.1   53   37-90      4-58  (171)
138 >1xng_A NH(3)-dependent NAD(+)  28.4      37  0.0011   14.3   4.1   61   35-95     24-86  (132)
139 >2atm_A Hyaluronoglucosaminida  28.2      37  0.0011   14.3   5.8   71   47-117    85-165 (178)
140 >3fj1_A Putative phosphosugar   28.2      37  0.0011   14.3   6.4   92   33-134    39-133 (193)
141 >3fbs_A Oxidoreductase; struct  27.1      33 0.00097   14.6   1.7   50   36-89     20-69  (101)
142 >2gqw_A Ferredoxin reductase;   27.1      39  0.0011   14.1   6.1   57   34-90     23-84  (116)
143 >3kg2_A Glutamate receptor 2;   27.0      39  0.0012   14.1   6.0   89   54-142     6-96  (189)
144 >3g68_A Putative phosphosugar   26.7      39  0.0012   14.1   4.4   94   31-134    28-124 (188)
145 >1fx0_A ATP synthase alpha cha  26.7      39  0.0012   14.1   8.1   96   47-142    82-184 (277)
146 >1e0t_A Pyruvate kinase, PK; p  26.5      40  0.0012   14.1   7.9   81   35-126    23-107 (124)
147 >1a9x_A Carbamoyl phosphate sy  26.4      40  0.0012   14.1   2.4   23   38-60     78-100 (127)
148 >1yb5_A Quinone oxidoreductase  26.2      40  0.0012   14.0   4.8   39   31-69     12-50  (165)
149 >1yt5_A Inorganic polyphosphat  26.1      33 0.00097   14.6   1.6   25   32-57     37-61  (78)
150 >1xhc_A NADH oxidase /nitrite   26.1      40  0.0012   14.0   4.3   50   40-89      3-55  (87)
151 >2c0c_A Zinc binding alcohol d  25.9      41  0.0012   14.0   3.0   38   32-69     19-56  (179)
152 >1fl2_A Alkyl hydroperoxide re  25.8      41  0.0012   14.0   3.3   30   40-69      4-33  (170)
153 >2vdc_G Glutamate synthase [NA  25.5      41  0.0012   14.0   4.4   36   34-69      3-38  (157)
154 >1gud_A ALBP, D-allose-binding  25.2      42  0.0012   13.9   9.7   98   52-150    11-113 (135)
155 >2pgn_A Cyclohexane-1,2-dione   25.1      42  0.0012   13.9   2.4   48   44-91      7-54  (190)
156 >1z0s_A Probable inorganic pol  24.8      29 0.00086   14.9   1.1   34   32-67     64-97  (140)
157 >3beg_B Splicing factor, argin  24.7      43  0.0013   13.9   2.1   59   59-117    13-71  (115)
158 >2pan_A Glyoxylate carboligase  24.7      43  0.0013   13.9   2.7  103   44-149     6-119 (220)
159 >3e9m_A Oxidoreductase, GFO/ID  24.7      43  0.0013   13.9   7.7   41   76-120    80-120 (181)
160 >2a4a_A Deoxyribose-phosphate   24.5      43  0.0013   13.8   6.0  101   47-149    71-190 (281)
161 >3gqv_A Enoyl reductase; mediu  24.4      44  0.0013   13.8   3.1   21   40-60    173-193 (215)
162 >8abp_A L-arabinose-binding pr  24.2      44  0.0013   13.8   9.1   98   53-150    13-122 (146)
163 >2a8x_A Dihydrolipoyl dehydrog  24.0      44  0.0013   13.8   3.8   34   36-70      3-36  (194)
164 >3dk9_A Grase, GR, glutathione  24.0      44  0.0013   13.8   5.2   51   39-89      4-58  (62)
165 >2uva_G Fatty acid synthase be  23.8      45  0.0013   13.8   2.7   30  104-133    50-79  (95)
166 >2a87_A TRXR, TR, thioredoxin   23.8      45  0.0013   13.8   3.5   35   33-68     11-45  (190)
167 >2oho_A Glutamate racemase; is  23.7      45  0.0013   13.8   3.9   68  107-178    63-132 (142)
168 >1lvl_A Dihydrolipoamide dehyd  23.5      45  0.0013   13.7   4.2   35   34-69      3-37  (192)
169 >1ozh_A ALS, acetolactate synt  23.5      45  0.0013   13.7   4.5   91   45-137     6-107 (180)
170 >3k7m_X 6-hydroxy-L-nicotine o  23.0      46  0.0014   13.7   3.7   29   40-68      4-32  (219)
171 >1u9y_A RPPK;, ribose-phosphat  22.9      46  0.0014   13.7   5.8  100   40-142    15-115 (128)
172 >1q6z_A BFD, BFDC, benzoylform  22.9      47  0.0014   13.7   3.2   48   45-92     12-59  (168)
173 >3gms_A Putative NADPH:quinone  22.9      47  0.0014   13.6   5.5   41   31-71     13-53  (149)
174 >3l49_A ABC sugar (ribose) tra  22.7      47  0.0014   13.6   5.8   99   53-151     9-118 (141)
175 >1zun_A Sulfate adenylyltransf  22.1      48  0.0014   13.6   7.0   72   50-122    32-107 (325)
176 >1v3u_A Leukotriene B4 12- hyd  22.0      48  0.0014   13.5   3.6   38   32-69     23-60  (182)
177 >1oj7_A Hypothetical oxidoredu  22.0      49  0.0014   13.5   3.2  110   41-155     7-136 (175)
178 >1f2t_B RAD50 ABC-ATPase; DNA   22.0      49  0.0014   13.5   3.0   37   94-130    85-124 (125)
179 >3fbs_A Oxidoreductase; struct  21.8      49  0.0014   13.5   3.8   30   40-69      5-34  (152)
180 >1ps9_A 2,4-dienoyl-COA reduct  21.8      49  0.0015   13.5   2.7   31   39-69     14-44  (159)
181 >3jy6_A Transcriptional regula  21.8      49  0.0015   13.5   8.5   95   55-150    11-110 (117)
182 >1gte_A Dihydropyrimidine dehy  21.7      49  0.0015   13.5   4.4   31   38-68     11-41  (186)
183 >2wvg_A PDC, pyruvate decarbox  21.7      49  0.0015   13.5   3.7   49   45-93     14-62  (177)
184 >1nri_A Hypothetical protein H  21.4      50  0.0015   13.5   6.6   55   92-155   142-196 (233)
185 >3l8k_A Dihydrolipoyl dehydrog  21.3      50  0.0015   13.5   6.9   56   35-90     12-69  (110)
186 >1hyu_A AHPF, alkyl hydroperox  21.3      50  0.0015   13.5   3.8   33   36-69     26-58  (189)
187 >1xdi_A RV3303C-LPDA; reductas  20.7      52  0.0015   13.4   4.3   31   37-68      3-33  (203)
188 >2i0z_A NAD(FAD)-utilizing deh  20.7      52  0.0015   13.4   3.8   36   33-69     23-58  (249)
189 >1ebd_A E3BD, dihydrolipoamide  20.7      52  0.0015   13.4   6.1   56   35-90     17-76  (115)
190 >2iht_A Carboxyethylarginine s  20.6      52  0.0015   13.4   3.6  110   39-154     9-136 (170)
191 >2q8n_A Glucose-6-phosphate is  20.6      52  0.0015   13.4   8.6  113   32-152    16-148 (170)
192 >2hqm_A GR, grase, glutathione  20.6      52  0.0015   13.4   5.4   53   37-89      2-58  (64)
193 >2wjw_A Glutamate receptor 2;   20.4      52  0.0016   13.3   8.0   89   54-142     7-97  (181)
194 >2nxw_A Phenyl-3-pyruvate deca  20.3      53  0.0016   13.3   2.5   80   45-126     9-99  (163)
195 >2i2c_A Probable inorganic pol  20.2      53  0.0016   13.3   2.9   34   33-67     32-66  (93)
196 >2vvm_A Monoamine oxidase N; F  20.1      53  0.0016   13.3   3.7   30   39-68     41-70  (495)
197 >2bpl_A Glucosamine--fructose-  20.0      53  0.0016   13.3   5.2   90   35-134    47-139 (206)
198 >3iwa_A FAD-dependent pyridine  20.0      53  0.0016   13.3   4.1   30   39-68      5-34  (209)

No 1  
>>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12} (A:32-182)
Probab=99.95  E-value=2.2e-27  Score=187.12  Aligned_cols=123  Identities=15%  Similarity=0.131  Sum_probs=109.5

Q ss_pred             CCCCCCCEEEEECCCH-HHHHHHHHHHHHCCCCCEECCCCC---------------------CCCCHHHHHHHHHHHC-C
Q ss_conf             6545687899946985-799999999996899824515876---------------------5467899999876515-8
Q gi|254780579|r   32 PDHPSVSAIVVLTGEP-IRIERAFELLENQIGEKIFISGVH---------------------HSVSKDILLQKIPIRQ-D   88 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg~-~Ri~~a~~L~~~g~~~~ii~SG~~---------------------~~~~~~~~~~~~~~~~-~   88 (207)
                      +.++++|+|||||||. .|.+.|++|+++|+++.++++|+.                     ...+|++.|++++.+. |
T Consensus         1 d~~~~~d~ivVLG~~~~~r~~~a~~l~~~~~a~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sEA~~m~~~l~~~~G   80 (151)
T 3ca8_A            1 EVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWH   80 (151)
T ss_dssp             TCCCCCSEEEEESCCCHHHHHHHHHHHHHHTCCEEEECCSSTTHHHHHHHHHTCTTGGGSCCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             77889898998189841889999999983598889617987454104444312666666788998899999999999649


Q ss_pred             CCHHHEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             86133220466666025699999999864--9981898511442199999999862998799964167
Q gi|254780579|r   89 LAECCIDIGYKALNTEGNAQEASAWAEKN--NFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIIS  154 (207)
Q Consensus        89 i~~~~I~~e~~s~~T~ena~~~~~~l~~~--~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~  154 (207)
                      +|+++|++|++|+||.|||.+++++++++  ++++++||||+|||+||.++|++.++++..++++++.
T Consensus        81 vp~~~I~~e~~s~~T~eNa~~~~~~l~~~~~~~~~iilVTs~~H~~Ra~~~~~~~~~~~~~~~~~~~~  148 (151)
T 3ca8_A           81 IPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSY  148 (151)
T ss_dssp             CCGGGEEEECCCCSHHHHHHHHHHHHHTCSSCCSCEEEECCTTTHHHHHHHHHHHHCCCTTSCSEEEC
T ss_pred             CCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEECC
T ss_conf             98999552788778899999999999963999887999898888999999999975767777402126


No 2  
>>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ... (A:103-289)
Probab=93.22  E-value=0.44  Score=26.07  Aligned_cols=109  Identities=15%  Similarity=0.193  Sum_probs=64.7

Q ss_pred             CCCCCCCEEEEECCC-HH---H-HHHHHHHHHHCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH
Q ss_conf             654568789994698-57---9-9999999996899824-5158765467899999876515886133220466666025
Q gi|254780579|r   32 PDHPSVSAIVVLTGE-PI---R-IERAFELLENQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG  105 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg-~~---R-i~~a~~L~~~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e  105 (207)
                      ....+.|.||++|-| ..   | +..|+.=+ ....+++ +++..++.     -+...+......+.-+++-.+|-+|.|
T Consensus        42 ~~~~~~~~vv~iGiGGS~LG~~~l~~al~~~-~~~~~~i~fldn~Dp~-----~~~~~l~~l~~~~Tl~iviSKSg~T~E  115 (187)
T 2cxn_A           42 YTGKSITDIINIGIGGSDLGPLMVTEALKPY-SKGGPRVWFVSNIDGT-----HIAKTLASLSPETSLFIIASKTFTTQE  115 (187)
T ss_dssp             TTSCBCCEEEEECCGGGTHHHHHHHHHTGGG-GTTSCEEEEECCSSHH-----HHHHHHTTCCTTTEEEEEECSSSCCHH
T ss_pred             CCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHH-----HHHHHHHCCCCCCEEEEEECCCCCCHH
T ss_conf             6655443157761575313189999996344-0266169976897507-----789876404866548999468777066


Q ss_pred             ---HHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             ---69999999986499------81898511442199999999862998799964
Q gi|254780579|r  106 ---NAQEASAWAEKNNF------HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP  151 (207)
Q Consensus       106 ---na~~~~~~l~~~~~------~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p  151 (207)
                         |+...++|+++.+.      ++++.||++--..+..     ...+.++.+.|
T Consensus       116 T~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~-----~~~~~~~f~~~  165 (187)
T 2cxn_A          116 TITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVKEF-----GIDPQNMFEFW  165 (187)
T ss_dssp             HHHHHHHHHHHHHHHHCCGGGGGGTEEEEESCHHHHHHH-----TCCGGGEEECC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHH-----CCCCCEEEEEE
T ss_conf             889999999999984466354430001135618999983-----15652388752


No 3  
>>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis} (A:93-282)
Probab=92.43  E-value=0.74  Score=24.68  Aligned_cols=110  Identities=18%  Similarity=0.163  Sum_probs=64.2

Q ss_pred             CCCCCCCEEEEECCC-HHHHH-HHHHHHH--HCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH-
Q ss_conf             654568789994698-57999-9999999--6899824-5158765467899999876515886133220466666025-
Q gi|254780579|r   32 PDHPSVSAIVVLTGE-PIRIE-RAFELLE--NQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG-  105 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg-~~Ri~-~a~~L~~--~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e-  105 (207)
                      ....+.|.||++|-| ..=-. ...+-++  ....+++ +++..++     ..+...+.+....+..+++-.+|-+|.| 
T Consensus        46 ~~~~~~~~vv~iGiGGS~LG~~~l~~al~~~~~~~~~i~f~~N~Dp-----~~~~~~l~~l~~~~Tl~iviSKSg~T~ET  120 (190)
T 2wu8_A           46 ATGKRISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNVDP-----ADLIATLADLDPATTLFIVASKTFSTLET  120 (190)
T ss_dssp             SSSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSH-----HHHHHHHTTCCGGGEEEEEECSSSCCHHH
T ss_pred             CCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCH-----HHHHHHHHCCCCCCEEEEEECCCCCCHHH
T ss_conf             6534312278872365654299999996100235401343799987-----99999874147544279994477773467


Q ss_pred             --HHHHHHHHHHHCC----C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             --6999999998649----9-81898511442199999999862998799964
Q gi|254780579|r  106 --NAQEASAWAEKNN----F-HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP  151 (207)
Q Consensus       106 --na~~~~~~l~~~~----~-~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p  151 (207)
                        |++..++|+++++    + ++++.||++-...+...     ..+.++.+.|
T Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~~vaiT~~~~~~~~~~-----~~~~~if~~~  168 (190)
T 2wu8_A          121 LTNATAARRWLTDALGDAAVSRHFVAVSTNKRLVDDFG-----INTDNMFGFW  168 (190)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGGTEEEECSCHHHHHHHT-----CCGGGEECCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHEECCCCCHHHHHHHC-----CCCCEEEECC
T ss_conf             89999999999873465776645001145568898630-----3401175012


No 4  
>>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: PG4; 1.50A {Vibrio cholerae} (A:126-311)
Probab=92.38  E-value=0.69  Score=24.87  Aligned_cols=111  Identities=14%  Similarity=0.056  Sum_probs=65.1

Q ss_pred             CCCCCCCCEEEEECCC-HHHHHH-HHH-HHHHCCCCCEEC-CCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH-
Q ss_conf             7654568789994698-579999-999-999689982451-58765467899999876515886133220466666025-
Q gi|254780579|r   31 IPDHPSVSAIVVLTGE-PIRIER-AFE-LLENQIGEKIFI-SGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG-  105 (207)
Q Consensus        31 ~~~~~~~DaIVVLgGg-~~Ri~~-a~~-L~~~g~~~~ii~-SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e-  105 (207)
                      .....+.|.||++|-| ..=-.. ..+ |......+++.+ +..++     +.+...+......+..+++-.+|-+|.| 
T Consensus        41 ~~~~~~~~~vv~iGiGGS~LG~~a~~~al~~~~~~~~i~f~dn~Dp-----~~~~~~l~~l~~~~tlviviSKSG~T~ET  115 (186)
T 3hjb_A           41 GFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDG-----THMAETLKNVDPETTLFLVASKTFTTQET  115 (186)
T ss_dssp             CTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSCEEEEECCSSH-----HHHHHHHTTCCGGGEEEEEECSSSCCHHH
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCH-----HHHHHHHHCCCCCCEEEEEECCCCCCCCH
T ss_conf             5668856638997172768999999998740034750540699998-----99999984489652799997388886334


Q ss_pred             --HHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             --69999999986499------81898511442199999999862998799964
Q gi|254780579|r  106 --NAQEASAWAEKNNF------HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP  151 (207)
Q Consensus       106 --na~~~~~~l~~~~~------~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p  151 (207)
                        |++..++|+++++.      ++++.||++--..+..     ...+..+.+.|
T Consensus       116 ~~~~~~~~~~l~~~~~~~~~~~~~~vaiT~~~~~~~~~-----~~~~~~~f~~~  164 (186)
T 3hjb_A          116 MTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEF-----GIDTDNMFEFW  164 (186)
T ss_dssp             HHHHHHHHHHHHHHHCSGGGGGGTEEEESSCHHHHHHH-----TCCGGGEECCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHH-----CCCCCCCCCCC
T ss_conf             78999999999973487776666600034657889871-----52533541367


No 5  
>>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A (A:168-342)
Probab=90.29  E-value=0.7  Score=24.80  Aligned_cols=120  Identities=13%  Similarity=0.081  Sum_probs=65.8

Q ss_pred             HHHHHHCCC--CCCCCCCCCEEEEECCC-HH---H-HHHHHHHHHHCCCCC-EECCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             999972134--67654568789994698-57---9-999999999689982-4515876546789999987651588613
Q gi|254780579|r   21 SFIRYVKQM--HIPDHPSVSAIVVLTGE-PI---R-IERAFELLENQIGEK-IFISGVHHSVSKDILLQKIPIRQDLAEC   92 (207)
Q Consensus        21 ~f~~~~~~~--~~~~~~~~DaIVVLgGg-~~---R-i~~a~~L~~~g~~~~-ii~SG~~~~~~~~~~~~~~~~~~~i~~~   92 (207)
                      -|...+...  .....++.|.+|++|-| .+   | +.+|+.=+ ....++ .+++..++.     -+...+......+.
T Consensus        12 ~~a~~ir~g~~~~~~g~~~~~vv~iGIGGS~LGp~~l~~al~~~-~~~~~~i~f~~n~Dp~-----~~~~~l~~l~~~~T   85 (175)
T 2o2c_A           12 SFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPF-SQRDLSLHFVSNVDGT-----HIAEVLKSIDIEAT   85 (175)
T ss_dssp             HHHHHHHHTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGG-SCTTSEEEEECCSSHH-----HHHHHHHHCCGGGE
T ss_pred             HHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-CCCCCEEEECCCCCHH-----HHHHHHHHHCCCCC
T ss_conf             99999855871376644443057724773348899999987411-4577206864786467-----89999864144320


Q ss_pred             HEECCCCCCCHHH---HHHHHHHHHHHCC----------C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             3220466666025---6999999998649----------9-81898511442199999999862998799964
Q gi|254780579|r   93 CIDIGYKALNTEG---NAQEASAWAEKNN----------F-HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP  151 (207)
Q Consensus        93 ~I~~e~~s~~T~e---na~~~~~~l~~~~----------~-~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p  151 (207)
                      .+++-.+|-+|.|   |+...++|+++.+          + ++++.||++---.+.     .......+.+.|
T Consensus        86 l~iviSKSg~T~ET~~n~~~~~~~l~~~~g~~~~~~~~~~~~~~vavT~~~~~~~~-----~~~~~~~~f~~~  153 (175)
T 2o2c_A           86 LFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKE-----FGIDEENMFQFW  153 (175)
T ss_dssp             EEEEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHEEEEESCHHHHHH-----HTCCGGGEEECC
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCHHHHHH-----HHHCCCCEEEEE
T ss_conf             36751123565324789999999999998750565122123226763275389999-----730037577520


No 6  
>>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} (A:167-341)
Probab=89.35  E-value=0.56  Score=25.42  Aligned_cols=96  Identities=18%  Similarity=0.097  Sum_probs=55.2

Q ss_pred             CCCCCCCEEEEECCC-HHH-HHHHHHHH-H-HCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH-
Q ss_conf             654568789994698-579-99999999-9-6899824-5158765467899999876515886133220466666025-
Q gi|254780579|r   32 PDHPSVSAIVVLTGE-PIR-IERAFELL-E-NQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG-  105 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg-~~R-i~~a~~L~-~-~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e-  105 (207)
                      ...++.|.+|++|-| ..= .....+-+ . ....+++ +++..++.     .+...+......+..+++-.+|-+|.| 
T Consensus        25 ~~~~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~i~fldn~Dp~-----~~~~~l~~l~~~~Tl~iviSKSg~T~ET   99 (175)
T 1t10_A           25 QTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGT-----HMAEVLKQVNLEETIFIIASKTFTTQET   99 (175)
T ss_dssp             TTSCBCCEEEEECCGGGTHHHHHHHHHTGGGSCSSSEEEEECCSSTH-----HHHHHHTTSCGGGEEEEEECSSSCCHHH
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHH-----HHHHHHHCCCCCCEEEEECCCCCCCCCH
T ss_conf             22112110466347734189999999974020045230006886389-----9999863167742035753666766422


Q ss_pred             --HHHHHHHHHHHCCC-----------CEEEEECCHHHHH
Q ss_conf             --69999999986499-----------8189851144219
Q gi|254780579|r  106 --NAQEASAWAEKNNF-----------HHVLIVTHDYHMP  132 (207)
Q Consensus       106 --na~~~~~~l~~~~~-----------~~iiLVTs~yHm~  132 (207)
                        |+...++|+.+.+.           ++++.||++--..
T Consensus       100 l~n~~~~~~~l~~~~~~~~~~~~~~~~~~~vavT~~~~~~  139 (175)
T 1t10_A          100 LTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTEKV  139 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTHHHHHEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             6679999999999866515650566766533202635789


No 7  
>>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} (A:)
Probab=86.34  E-value=1.9  Score=22.18  Aligned_cols=16  Identities=25%  Similarity=0.406  Sum_probs=7.2

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             6660256999999998
Q gi|254780579|r  100 ALNTEGNAQEASAWAE  115 (207)
Q Consensus       100 s~~T~ena~~~~~~l~  115 (207)
                      ..-|.+|+.++..+.+
T Consensus       107 G~GTleEl~e~~~~~~  122 (191)
T 1t35_A          107 GFGTYEELFEVLCWAQ  122 (191)
T ss_dssp             CHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             6204999999999999


No 8  
>>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:217-375)
Probab=86.28  E-value=2.2  Score=21.72  Aligned_cols=91  Identities=8%  Similarity=-0.142  Sum_probs=51.6

Q ss_pred             CCCCEEEEECCCHHH--HHH-HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH
Q ss_conf             568789994698579--999-99999968998245158765467899999876515886133220466666025699999
Q gi|254780579|r   35 PSVSAIVVLTGEPIR--IER-AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS  111 (207)
Q Consensus        35 ~~~DaIVVLgGg~~R--i~~-a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~  111 (207)
                      .++.-|.|+|.|...  ..+ +.+|.+.+..+-...+...       .+..... .--+++++++-..+..|.|......
T Consensus        13 ~~a~~i~i~G~G~s~~~A~~~~~kl~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~d~vi~is~~g~t~e~~~~~~   84 (159)
T 2zj3_A           13 YHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGE-------LKHGPLA-LVDKLMPVIMIIMRDHTYAKCQNAL   84 (159)
T ss_dssp             TTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGG-------GGGTGGG-GCSTTSCEEEEECSSTTHHHHHHHH
T ss_pred             HHCCCCEEECCCCCHHHHHHHHHHHHHHHCEEEEEECHHH-------HHCCCHH-HCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             5354554756874378999999999886351347722576-------4075266-5079971899975731478899999


Q ss_pred             HHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             99986499818985114421999
Q gi|254780579|r  112 AWAEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus       112 ~~l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      +.++++|.+ +++||+..+.+=+
T Consensus        85 ~~~k~~g~~-vi~it~~~~s~l~  106 (159)
T 2zj3_A           85 QQVVARQGR-PVVICDKEDTETI  106 (159)
T ss_dssp             HHHHHTTCC-CEEEEETTCHHHH
T ss_pred             HHHHHCCCC-EEEEECCCCHHHH
T ss_conf             999977996-8999878722333


No 9  
>>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A (A:83-462)
Probab=85.24  E-value=2.5  Score=21.41  Aligned_cols=94  Identities=9%  Similarity=-0.021  Sum_probs=48.6

Q ss_pred             CCCEEEEECCCH---HHHHHHHHHHHH-CCCCCEECCCCCCCCCHHHHHHHHHHH---------------CCCC------
Q ss_conf             687899946985---799999999996-899824515876546789999987651---------------5886------
Q gi|254780579|r   36 SVSAIVVLTGEP---IRIERAFELLEN-QIGEKIFISGVHHSVSKDILLQKIPIR---------------QDLA------   90 (207)
Q Consensus        36 ~~DaIVVLgGg~---~Ri~~a~~L~~~-g~~~~ii~SG~~~~~~~~~~~~~~~~~---------------~~i~------   90 (207)
                      ....+||.|+..   .-...|.+|-+. +..-.-+++|++++.-++.........               ...+      
T Consensus        64 ~~~~vv~~GSar~~~~~Y~~A~elG~~La~~g~~ivTGGGpG~Meaa~~GA~~a~g~s~~~~G~viGi~p~~l~~ee~pN  143 (380)
T 3gh1_A           64 TPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAXEGPXKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPN  143 (380)
T ss_dssp             CSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCTTCCEEEEECTTTTTTSCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88869982899899899999999999999879969989778999899988998279644777753576787774334688


Q ss_pred             ----------------------HHHEECCCCCCCHHHHHHHHHHHHHHCCCC----EEEEECCHH
Q ss_conf             ----------------------133220466666025699999999864998----189851144
Q gi|254780579|r   91 ----------------------ECCIDIGYKALNTEGNAQEASAWAEKNNFH----HVLIVTHDY  129 (207)
Q Consensus        91 ----------------------~~~I~~e~~s~~T~ena~~~~~~l~~~~~~----~iiLVTs~y  129 (207)
                                            .+.+++-+-.--|.||+.++..|++....+    -++|+-..+
T Consensus       144 ~~v~~li~~~~~~~Rk~~fv~~sdaiIvlPGG~GTLdElfe~ltl~q~g~~~k~~~PiVL~G~~~  208 (380)
T 3gh1_A          144 PIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYILGIXXHPENADQPXPIVLTGPKQ  208 (380)
T ss_dssp             TTCSEEEECSSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf             76550487386899999999867889985897650999999999985555788986899967865


No 10 
>>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} (A:)
Probab=81.81  E-value=3.5  Score=20.55  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=19.0

Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCHH
Q ss_conf             204666660256999999998649981--89851144
Q gi|254780579|r   95 DIGYKALNTEGNAQEASAWAEKNNFHH--VLIVTHDY  129 (207)
Q Consensus        95 ~~e~~s~~T~ena~~~~~~l~~~~~~~--iiLVTs~y  129 (207)
                      +.-.-+--|.+|+.++..+.+-...++  +++..+.|
T Consensus       110 I~lpGG~GTl~El~~~lt~~q~g~~~~~~ivl~~~g~  146 (216)
T 1ydh_A          110 IALPGGYGTXEELLEXITWSQLGIHKKTVGLLNVDGY  146 (216)
T ss_dssp             EECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGT
T ss_pred             EEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             9927850589999999999984055787289967874


No 11 
>>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182)
Probab=81.52  E-value=3.6  Score=20.49  Aligned_cols=85  Identities=11%  Similarity=-0.067  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH-------------------HHEECCCCCCCHHHHHH
Q ss_conf             79999999999689982451587654678999998765158861-------------------33220466666025699
Q gi|254780579|r   48 IRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE-------------------CCIDIGYKALNTEGNAQ  108 (207)
Q Consensus        48 ~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~-------------------~~I~~e~~s~~T~ena~  108 (207)
                      +.++.++++..+..+++|++-|.+....-++.++..+...|...                   +.++.-..+..| .+..
T Consensus         3 ~~i~~~v~~l~~~~a~~I~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~sg~t-~~~~   81 (149)
T 3knz_A            3 EDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFXQRWCALPVDVCWPFXLDDETLARSGKALVVGISQGGGS-LSTL   81 (149)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEEECGGGCCHHHHHHSCSEEEEEEESSSCC-HHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCEEEEEEECCCCC-HHHH
T ss_conf             999999999986799989999950799999999999999839987995577840777789998189999389388-8999


Q ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             99999986499818985114421999
Q gi|254780579|r  109 EASAWAEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus       109 ~~~~~l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      ...+.++++|. .++++|+.-..+=+
T Consensus        82 ~~~~~ak~~g~-~~i~iT~~~~s~l~  106 (149)
T 3knz_A           82 AAXERARNVGH-ITASXAGVAPATID  106 (149)
T ss_dssp             HHHHHHHHTTC-EEEEEESSSSCGGG
T ss_pred             HHHHHHHHHHH-HHCCCCCCCCCHHH
T ss_conf             99987665202-20257887862766


No 12 
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223)
Probab=81.33  E-value=3.6  Score=20.44  Aligned_cols=94  Identities=13%  Similarity=-0.015  Sum_probs=64.5

Q ss_pred             HHHHHHHCCCCCEECCCCCCCC--C--HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             9999996899824515876546--7--89999987651588613322046666602569999999986499818985114
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSV--S--KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~--~--~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      +-.|.++|.....+++|.....  .  ..+..+..+.+.+++....    ...++.+............ .-..++++++
T Consensus         9 ~~~l~~~G~r~i~~i~~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~ai~~~~d   83 (125)
T 1byk_A            9 MQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAA----LPGLAMKQGYENVAKVITP-ETTALLCATD   83 (125)
T ss_dssp             HHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEE----CCCSCHHHHHHHSGGGCCT-TCCEEEESSH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHHCC-CCCEECCCCH
T ss_conf             9999985114432357666765077777677999999739976201----3778789999999997135-6760011324


Q ss_pred             HHHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf             421999999998629-98799964
Q gi|254780579|r  129 YHMPRTFLELQRINS-TVQFIPYP  151 (207)
Q Consensus       129 yHm~RA~~~f~~~~p-~i~i~~~p  151 (207)
                      .....++..++..+| ++.++.+-
T Consensus        84 ~~A~~~~~~l~~~gp~di~iv~fd  107 (125)
T 1byk_A           84 TLALGASKYLQEQRIDTLQLASVG  107 (125)
T ss_dssp             HHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             667568999976086522236759


No 13 
>>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} (A:)
Probab=81.18  E-value=3.7  Score=20.41  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=19.2

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEE-CCHH
Q ss_conf             22046666602569999999986499-818985-1144
Q gi|254780579|r   94 IDIGYKALNTEGNAQEASAWAEKNNF-HHVLIV-THDY  129 (207)
Q Consensus        94 I~~e~~s~~T~ena~~~~~~l~~~~~-~~iiLV-Ts~y  129 (207)
                      ++.-+-+.-|.+|+..+..+.+-... +.++++ .+.|
T Consensus       113 ~I~lpGG~GTl~Ei~~~~~~~~~g~~~~p~iil~~~gf  150 (215)
T 2a33_A          113 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY  150 (215)
T ss_dssp             EEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             66826632468999999999976887888389856884


No 14 
>>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus HB8} (A:43-204)
Probab=80.45  E-value=3.9  Score=20.26  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHHCCCCCEEC-CCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH---HH
Q ss_conf             545687899946-98579999999999689982451-58765467899999876515886133220466666025---69
Q gi|254780579|r   33 DHPSVSAIVVLT-GEPIRIERAFELLENQIGEKIFI-SGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG---NA  107 (207)
Q Consensus        33 ~~~~~DaIVVLg-Gg~~Ri~~a~~L~~~g~~~~ii~-SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e---na  107 (207)
                      ...+.|.||++| ||..=-..++..+-++..+.+.+ +..++.     .....+......+.-++.-.+|-+|.|   |+
T Consensus        20 ~~~~~~~iv~iGiGGS~lg~~~~~~~l~~~~~~~~~~~n~D~~-----~~~~~l~~l~~~~TlviviSkSG~T~ET~~~~   94 (162)
T 1zzg_A           20 ANPWVEDFVLIGIGGSALGPKALEAAFNESGVRFHYLDHVEPE-----PILRLLRTLDPRKTLVNAVSKSGSTAETLAGL   94 (162)
T ss_dssp             TCTTCSEEEEECCGGGTHHHHHHHHHHCCSCCEEEEECSCCHH-----HHHHHHHHSCGGGEEEEEEESSSCCHHHHHHH
T ss_pred             HHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCHH-----HHHHHHHHCCCHHEEEEEECCCCCCHHHHHHH
T ss_conf             7358996999976477899999999983669738995489989-----99999983681341899846998870378999


Q ss_pred             HHHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99999998649----981898511442199999999862998799964
Q gi|254780579|r  108 QEASAWAEKNN----FHHVLIVTHDYHMPRTFLELQRINSTVQFIPYP  151 (207)
Q Consensus       108 ~~~~~~l~~~~----~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p  151 (207)
                      +..++++.+.+    -++++.||++--...-...=++   +..+.+.|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~v~iT~~~s~~l~~~~~~~---~~~~~~~~  139 (162)
T 1zzg_A           95 AVFLKWLKAHLGEDWRRHLVVTTDPKEGPLRAFAERE---GLKAFAIP  139 (162)
T ss_dssp             HHHHHHHHHHHGGGGGGGEEEEECSSSSHHHHHHHHH---TCEEEECC
T ss_pred             HHHHHHHHHCCCCHHHHCEEEEECCCHHHHHHHHHHH---HHHHEECC
T ss_conf             9999998753251666440322033067999987652---24421134


No 15 
>>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:103-223)
Probab=79.10  E-value=4.3  Score=20.00  Aligned_cols=99  Identities=14%  Similarity=0.060  Sum_probs=70.9

Q ss_pred             HHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             9999999689982451587654678---9999987651588613322046666602569999999986499818985114
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      .+-.|+++|+....+++|.......   ..-+.....+.+.+...+.......+..+.......++...+....++++++
T Consensus         9 a~~~L~~~G~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d   88 (121)
T 3d8u_A            9 CTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAXIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHE   88 (121)
T ss_dssp             HHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEESSH
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf             99988751462364113576530122100013555542277664000123575222688999987652378607875027


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             42199999999862---9-9879996
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      ....-++..++..+   | ++.|+.+
T Consensus        89 ~~a~~~l~~l~~~g~~vP~di~iig~  114 (121)
T 3d8u_A           89 EIAIGALFECHRRVLKVPTDIAIICL  114 (121)
T ss_dssp             HHHHHHHHHHHHTTCCTTTTCEEEES
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             77766666554213322332101321


No 16 
>>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} (A:)
Probab=78.81  E-value=4.4  Score=19.94  Aligned_cols=112  Identities=14%  Similarity=0.060  Sum_probs=71.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99946985799999999996899824515876546789999987651588613322046666602569999999986499
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF  119 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~  119 (207)
                      +..+.||..|...-.+.+.  .++..+.+......+...  ........+....+++-..--+|-+....+.+.++++|.
T Consensus        82 v~~d~~g~~~~~~~~~~l~--~~~~~~~~~~r~~~~~~~--~~~~l~~dv~~k~viIvDdmi~TG~T~i~a~~~Lk~~Ga  157 (217)
T 3dmp_A           82 VPVLRAGVGMSDGLLELIP--SARVGHIGVYRADDHRPV--EYLVRLPDLEDRIFILCDPMVATGYSAAHAIDVLKRRGV  157 (217)
T ss_dssp             EEEETTTHHHHHHHHHHCT--TSEECEEECSCCCSSSCC--CSEEECCCCTTCEEEEECSEESSSHHHHHHHHHHHTTTC
T ss_pred             EEECCCHHHHHHHHHHHCC--CCEEEEEEEEECCCCCCE--EEEECCCCHHHCEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             9861436759999998687--740789998607989815--766628973435799980433670889999999998699


Q ss_pred             CE-EEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             81-8985114421999999998629987999641676
Q gi|254780579|r  120 HH-VLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus       120 ~~-iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                      ++ .+++|+..-...+.-.+.+.+++..++...++..
T Consensus       158 ~~v~i~~th~i~s~~a~~~i~~~~~~~~i~t~ti~~~  194 (217)
T 3dmp_A          158 PGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSH  194 (217)
T ss_dssp             CGGGEEEECSEECHHHHHHHHHHCTTCEEEESEECCE
T ss_pred             CCCEEEEEEEEECHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             9517999999965899999998797978999854777


No 17 
>>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375)
Probab=78.74  E-value=3.2  Score=20.80  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=23.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf             60256999999998649981898511442199999
Q gi|254780579|r  102 NTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFL  136 (207)
Q Consensus       102 ~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~  136 (207)
                      ||.+.+..+.+++.++|++++.+|++++.--++..
T Consensus         1 nd~~qa~~~a~~l~~~g~k~Vaii~~D~ayG~~~~   35 (191)
T 3i09_A            1 DTXALAKGTGSAVVKQGGKTWFFLTADYAFGKALE   35 (191)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf             64999999999987513778999516871878999


No 18 
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242)
Probab=75.70  E-value=5.4  Score=19.40  Aligned_cols=99  Identities=8%  Similarity=-0.095  Sum_probs=66.6

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             99999968998245158765467---899999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|+++|+.+..+++|......   ..+-..+.+.+.++............++.+.......+++..+-...++++++.
T Consensus         9 ~~~l~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~   88 (132)
T 3gv0_A            9 VERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLXQSSDRPDGIVSISGS   88 (132)
T ss_dssp             HHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEESCHH
T ss_pred             HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             77763125340368717743322566678889999986311003330343211135778887654303577400113478


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             2199999999862---9-98799964
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      .+.+++..+++..   | ++.++.+-
T Consensus        89 ~a~~~~~~l~~~g~~ip~di~i~~fd  114 (132)
T 3gv0_A           89 STIALVAGFEAAGVKIGEDVDIVSKQ  114 (132)
T ss_dssp             HHHHHHHHHHTTTCCTTTSCEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             88877888763330145422899967


No 19 
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:108-243,A:302-316)
Probab=74.85  E-value=5.6  Score=19.27  Aligned_cols=98  Identities=6%  Similarity=0.019  Sum_probs=58.8

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             99999968998245158765467---899999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      .+++..+|.....+++|......   ..+-++..+.+.+.............+.........++++.+.--+.+++.++.
T Consensus        13 l~~~~~~g~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~   92 (151)
T 1tjy_A           13 AAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDAN   92 (151)
T ss_dssp             HHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECSTT
T ss_pred             HHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf             99860455542000024676420135666677776503553320123302146788899999987328985199978868


Q ss_pred             HHHHHHHHHHHHCC-CCEEEEE
Q ss_conf             21999999998629-9879996
Q gi|254780579|r  130 HMPRTFLELQRINS-TVQFIPY  150 (207)
Q Consensus       130 Hm~RA~~~f~~~~p-~i~i~~~  150 (207)
                      ...-+...++..+| ++.++.+
T Consensus        93 ~a~g~~~al~~~g~~~i~ivgf  114 (151)
T 1tjy_A           93 ALPAAAQAAENLKRNNLAIVGF  114 (151)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEEB
T ss_pred             HHHHHHHHHHHCCCCCCEEEEE
T ss_conf             9999999999769998579998


No 20 
>>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} (A:)
Probab=73.59  E-value=6.1  Score=19.08  Aligned_cols=76  Identities=14%  Similarity=-0.013  Sum_probs=32.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC---------CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHH
Q ss_conf             878999469857999999999968998245158765---------46789999987651588613322046666602569
Q gi|254780579|r   37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH---------SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNA  107 (207)
Q Consensus        37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~---------~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena  107 (207)
                      .+..||-||+.+=...+.+=..+.-...|-+...+.         ......+...........+..|.++ -..-|.+++
T Consensus        57 ~g~~ivsGg~~Gim~aa~~ga~~~gg~~igi~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sda~Iv~~-gg~GTl~E~  135 (195)
T 1rcu_A           57 KGYLVFNGGRDGVXELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIG-GEIGTAIEI  135 (195)
T ss_dssp             TTCEEEECCSSHHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTTCSEEEEES-CCHHHHHHH
T ss_pred             CCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEC-CCCCHHHHH
T ss_conf             7999994872748899999888629906887326763577567313455446776678753266205504-344358999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780579|r  108 QEASAW  113 (207)
Q Consensus       108 ~~~~~~  113 (207)
                      .++.++
T Consensus       136 ~~a~~~  141 (195)
T 1rcu_A          136 LGAYAL  141 (195)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
T ss_conf             999991


No 21 
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240)
Probab=72.46  E-value=6.4  Score=18.91  Aligned_cols=100  Identities=9%  Similarity=-0.015  Sum_probs=66.2

Q ss_pred             HHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             9999999689982451587654678---9999987651588613322046666602569999999986499818985114
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      .+-.|+++|.....+++|.....+.   ..-++..+.+.+++...........+..+-.....+++.+..-...++++++
T Consensus         8 a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d   87 (132)
T 3egc_A            8 AVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSH   87 (132)
T ss_dssp             HHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSH
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCC
T ss_conf             89999976995586612772122033555899999998399854301324775267789999999854788630220232


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             42199999999862---9-98799964
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      .=...++..++...   | ++.|+.+-
T Consensus        88 ~~a~~~~~~l~~~g~~iP~di~vvg~d  114 (132)
T 3egc_A           88 RITEGAMQALNVLGLRYGPDVEIVSFD  114 (132)
T ss_dssp             HHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred             CCCCCCEEHHHCCCCCCCCCEEEEECC
T ss_conf             002451312220598567540145317


No 22 
>>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:115-246)
Probab=71.96  E-value=6.6  Score=18.84  Aligned_cols=100  Identities=13%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             HHHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             999999968998245158765467---89999987651588613322046666602569999999986499818985114
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      .+-.|+++|+....++++......   ..+-....+.+.|+............+-........+++........++++++
T Consensus         8 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d   87 (132)
T 3hcw_A            8 LTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDA   87 (132)
T ss_dssp             HHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             88875201322332245554320145556889999987498511011455403566665555432035777642222220


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             42199999999862---9-98799964
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      .....+...+++..   | ++.++.+-
T Consensus        88 ~~a~~~~~~l~~~g~~iP~di~ii~fd  114 (132)
T 3hcw_A           88 MLHLAILSVLYELNIEIPKDVMTATFN  114 (132)
T ss_dssp             HHHHHHHHHHHHTTCCTTTTEEEEEEC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             133333554420332232210022568


No 23 
>>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A* (A:50-222)
Probab=70.70  E-value=7.1  Score=18.67  Aligned_cols=111  Identities=14%  Similarity=0.043  Sum_probs=60.4

Q ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHH------HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH--
Q ss_conf             5687899946-98579999999999------68998245158765467899999876515886133220466666025--
Q gi|254780579|r   35 PSVSAIVVLT-GEPIRIERAFELLE------NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG--  105 (207)
Q Consensus        35 ~~~DaIVVLg-Gg~~Ri~~a~~L~~------~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e--  105 (207)
                      ...|.||++| ||..=-..++.-.-      +...++.+.-..+  .. .......+......+..+++-.+|-+|.|  
T Consensus        25 ~~~~~vv~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~i~~~~n--~D-p~~~~~~l~~l~~~~Tl~iviSKSG~T~ET~  101 (173)
T 3ff1_A           25 ENSDVLVVIGIGGSYLGARAAIEXLTSSFRNSNEYPEIVFVGNH--LS-STYTKELVDYLADKDFSVNVISKSGTTTEPA  101 (173)
T ss_dssp             HHCSEEEEECCGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSS--CC-HHHHHHHHHHGGGCCEEEEEECSSSCCHHHH
T ss_pred             HCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--CC-HHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
T ss_conf             27998999945175689999999999887611678827985798--74-4689999973176675599998998877699


Q ss_pred             -HHHHHHHHHHHCCC-----CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             -69999999986499-----81898511442199999999862998799964
Q gi|254780579|r  106 -NAQEASAWAEKNNF-----HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP  151 (207)
Q Consensus       106 -na~~~~~~l~~~~~-----~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p  151 (207)
                       |++..++|+++.+.     ++++.||++--.......=++   +..+...|
T Consensus       102 ~~~~~~~~~l~~~~~~~~~~~~~vaiT~~~s~~l~~~a~~~---~~~~f~~~  150 (173)
T 3ff1_A          102 VAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNE---GYETFIVP  150 (173)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHEEEEECSSCSHHHHHHHHH---TCEEEECC
T ss_pred             HHHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHHHHHHHHC---CCCEECCC
T ss_conf             99999999999704735554478997367556789874401---31155168


No 24 
>>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:1-210)
Probab=70.57  E-value=7.1  Score=18.65  Aligned_cols=91  Identities=5%  Similarity=-0.181  Sum_probs=52.7

Q ss_pred             CCCCEEEEECCCHHH-HHH--HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH
Q ss_conf             568789994698579-999--99999968998245158765467899999876515886133220466666025699999
Q gi|254780579|r   35 PSVSAIVVLTGEPIR-IER--AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS  111 (207)
Q Consensus        35 ~~~DaIVVLgGg~~R-i~~--a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~  111 (207)
                      .+++-|.+.|.|..- +..  +..|.+.|.....+..        ........... -++++++.-..|.+|.+ ...+.
T Consensus        50 ~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~--------~~~~~~~~~~~-~~~d~vI~iS~sG~t~e-~~~~~  119 (210)
T 1moq_A           50 SKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEI--------ASEFRYRKSAV-RRNSLMITLSQSGETAD-TLAGL  119 (210)
T ss_dssp             HHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEEEE--------HHHHHTSCCCC-CTTEEEEEEESSSCCHH-HHHHH
T ss_pred             HCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEE--------CCHHHCCCCCC-CCCCEEEEECCCCCCHH-HHHHH
T ss_conf             3088899996418999999999999985484329980--------60653247777-99978999778899679-99999


Q ss_pred             HHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             999864998189851144219999
Q gi|254780579|r  112 AWAEKNNFHHVLIVTHDYHMPRTF  135 (207)
Q Consensus       112 ~~l~~~~~~~iiLVTs~yHm~RA~  135 (207)
                      +.++++|...++++|+..+.+-+.
T Consensus       120 ~~a~~~g~~~ii~~t~~~~s~l~~  143 (210)
T 1moq_A          120 RLSKELGYLGSLAICNVPGSSLVR  143 (210)
T ss_dssp             HHHTTTTCSEEEEEESSTTCHHHH
T ss_pred             HHHHHCCCCCEEEEECCCCCHHHH
T ss_conf             999976997189998999998899


No 25 
>>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:211-368)
Probab=69.75  E-value=7.4  Score=18.54  Aligned_cols=89  Identities=8%  Similarity=-0.112  Sum_probs=46.7

Q ss_pred             CCCCEEEEECCCHHH--HHH-HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH
Q ss_conf             568789994698579--999-99999968998245158765467899999876515886133220466666025699999
Q gi|254780579|r   35 PSVSAIVVLTGEPIR--IER-AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS  111 (207)
Q Consensus        35 ~~~DaIVVLgGg~~R--i~~-a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~  111 (207)
                      ..++.|.++|.|..-  ..+ +.+|.+-+.-+....+...       .... ....--+++.+++-..+..|.|......
T Consensus        12 ~~a~~i~i~G~G~s~~~A~~~~~kl~~~~g~~~~~~~~~~-------~~~~-~~~~~~~~d~vi~is~~g~t~e~~~~~~   83 (158)
T 1moq_A           12 SDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGE-------LKHG-PLALIDADMPVIVVAPNNELLEKLKSNI   83 (158)
T ss_dssp             TTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGG-------GGGT-GGGGCSTTSCEEEESCCHHHHHHHHHHH
T ss_pred             HCCCCCEEECCCCCHHHHHHHHHHHHHHHCCEEEECCHHH-------HCCC-CHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf             4375533642666579999999999986440224343888-------4449-7988289973899705866889999999


Q ss_pred             HHHHHCCCCEEEEECCHHHHH
Q ss_conf             999864998189851144219
Q gi|254780579|r  112 AWAEKNNFHHVLIVTHDYHMP  132 (207)
Q Consensus       112 ~~l~~~~~~~iiLVTs~yHm~  132 (207)
                      +.++++|.+ ++.+|+....+
T Consensus        84 ~~~k~~g~~-~i~it~~~~s~  103 (158)
T 1moq_A           84 EEVRARGGQ-LYVFADQDAGF  103 (158)
T ss_dssp             HHTGGGTCC-EEEEEEGGGCC
T ss_pred             HHHHHCCCE-EEEEECCCCCC
T ss_conf             999964992-99996687222


No 26 
>>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:450-608)
Probab=69.44  E-value=7.5  Score=18.50  Aligned_cols=91  Identities=8%  Similarity=-0.145  Sum_probs=52.0

Q ss_pred             CCCCCCEEEEECCCHHH--HHH-HHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH
Q ss_conf             54568789994698579--999-999999689982451587654678999998765158861332204666660256999
Q gi|254780579|r   33 DHPSVSAIVVLTGEPIR--IER-AFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQE  109 (207)
Q Consensus        33 ~~~~~DaIVVLgGg~~R--i~~-a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~  109 (207)
                      .-..++-|.|+|-|...  ..+ +..|.+.+..+....+...       .+....... -+++++++-..+..|.|....
T Consensus        11 ~l~~a~~i~i~G~G~s~~~A~~~~~kl~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~d~vi~is~~g~~~e~~~~   82 (159)
T 2bpl_A           11 DFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGE-------LKHGPLALI-DADMPVIVVAPNNELLEKLKS   82 (159)
T ss_dssp             GGTTCCEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGG-------GGGTGGGGC-CTTCEEEEEECSSTTHHHHHH
T ss_pred             HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHH-------HHCCCHHHC-CCCCEEEEEECCCHHHHHHHH
T ss_conf             874576515872687229999999999876172147643888-------304758660-799709999779736999999


Q ss_pred             HHHHHHHCCCCEEEEECCHHHHH
Q ss_conf             99999864998189851144219
Q gi|254780579|r  110 ASAWAEKNNFHHVLIVTHDYHMP  132 (207)
Q Consensus       110 ~~~~l~~~~~~~iiLVTs~yHm~  132 (207)
                      ..+.++++|. +++++|+....+
T Consensus        83 ~~~~ak~~g~-~vi~it~~~~s~  104 (159)
T 2bpl_A           83 NIEEVRARGG-QLYVFADQDAGF  104 (159)
T ss_dssp             HHHHHHHTTC-EEEEEEETTSCC
T ss_pred             HHHHHHHCCC-EEEEEECCCCCC
T ss_conf             9999996699-599997587332


No 27 
>>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} (D:)
Probab=68.71  E-value=7.2  Score=18.62  Aligned_cols=112  Identities=9%  Similarity=-0.030  Sum_probs=70.4

Q ss_pred             EECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             94698579999999999689982451587654678999998765158861332204666660256999999998649981
Q gi|254780579|r   42 VLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHH  121 (207)
Q Consensus        42 VLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~  121 (207)
                      .+.||..|...-.+.+..  ++...+....+..+.............+....+++-..--+|-+....+.+.++++|.++
T Consensus       109 pd~gg~~~~~~~~~~l~~--~~~~~~~~~r~~~~~~~~~~~~~~~~dv~gr~vIIvDdii~TG~T~~~a~~~Lk~~Ga~~  186 (243)
T 1bd3_D          109 IVRAGESMESGLRAVCRG--VRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKE  186 (243)
T ss_dssp             EETTTHHHHHHHHHHSTT--CCEEEEEEEECSSSCCEEEEEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCCG
T ss_pred             EECCCCCCHHHHHHHCCC--CEEEEEEECCCCCCCCCEEEHHHCCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf             523666311316663865--212246411256667844208458765345648985746605377999999999739974


Q ss_pred             -EEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             -8985114421999999998629987999641676
Q gi|254780579|r  122 -VLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus       122 -iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                       .+.+|+..=.+.+...+.+.+++..++...++..
T Consensus       187 i~~~~th~i~s~~a~~~i~~~~~~~ii~t~ti~~~  221 (243)
T 1bd3_D          187 ERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDIC  221 (243)
T ss_dssp             GGEEEEEEEECHHHHHHHHHHCTTSEEEEEEECSE
T ss_pred             CEEEEEEEEECHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             21799999865899999998797978999986765


No 28 
>>1ou0_A Precorrin-8X methylmutase related protein; structural genomics, PSI, protein structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} (A:)
Probab=68.51  E-value=7.9  Score=18.38  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=42.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH
Q ss_conf             687899946985799999999996899824515876546789999987651588613322046666602
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTE  104 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~  104 (207)
                      ..++|+|.|-.+-=+.+-++|.++|...+-++-|..-++-.+.-.++.+.+.++|.. +....+.-|+.
T Consensus       127 ~~~~IvvIGNAPTAL~~l~~li~~g~~~PalVIg~PVGFV~AaESKe~L~~~~iP~I-t~~G~kGGS~v  194 (207)
T 1ou0_A          127 HRNSVIVIGNAPTALLEAXRXIEENGWYDIPIVGIPVGFINASKAKEGLVSSHIEYI-SVEGHRGGSPI  194 (207)
T ss_dssp             CSSEEEEESSCHHHHHHHHHHHHHHTCTTCCEEECCCCSHHHHHHHHHHHHSSSCEE-EESSSCCCHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEE-EEECCCCCHHH
T ss_conf             699789975880799999999984499997799889876588999999985899989-98259853999


No 29 
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=68.13  E-value=8  Score=18.34  Aligned_cols=99  Identities=8%  Similarity=0.007  Sum_probs=64.4

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             999999689982451587654678---99999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|.++|+....+++|.......   .+-....+.+.+.....+.......+..+.......++....--..++++++.
T Consensus         9 ~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~   88 (134)
T 3g85_A            9 SLLFAKKRYKSAAAILTESLNDAXDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLXKLKNTPKALFCNSDS   88 (134)
T ss_dssp             HHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             54331022222222356644217777776541011101223442200102422015677888776504654224420222


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             2199999999862---9-98799964
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      ....++...++.+   | ++.|+.+.
T Consensus        89 ~a~~~~~~l~~~g~~vP~di~ii~f~  114 (134)
T 3g85_A           89 IALGVISVLNKRQISIPDDIEIVAIG  114 (134)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             CCCHHHHHHHHCCCCCCCEEEEEECC
T ss_conf             33015677640113588446676326


No 30 
>>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} (A:399-520)
Probab=67.31  E-value=8.3  Score=18.23  Aligned_cols=87  Identities=15%  Similarity=0.067  Sum_probs=56.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH
Q ss_conf             45687899946985799999999996899824515876546789999987651588613322046666602569999999
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW  113 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~  113 (207)
                      .-++++|||++-.-.   .|..+.+..+..+|+.--     ......+......|+..   .+-+...++.+...++.++
T Consensus        18 ~l~akaIvv~T~sG~---ta~~isk~RP~~pI~a~t-----~~~~~~r~l~l~~GV~p---~~~~~~~~~e~~~~~~~~~   86 (122)
T 3khd_A           18 SIQASLIIALTETGY---TARLIAKYKPSCTILALS-----ASDSTVKCLNVHRGVTC---IKVGSFQGTDIVIRNAIEI   86 (122)
T ss_dssp             HTTCSEEEEECSSSH---HHHHHHHTCCSSEEEEEE-----SCHHHHHHGGGSTTEEE---EECCSCCCHHHHHHHHHHH
T ss_pred             HCCCCEEEEECCCCH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHCCCCEEE---EECCCCCCHHHHHHHHHHH
T ss_conf             469989999889838---999999549799889986-----98899988655078389---9838879999999999999


Q ss_pred             HHHCCC---CEEEEECCHHHH
Q ss_conf             986499---818985114421
Q gi|254780579|r  114 AEKNNF---HHVLIVTHDYHM  131 (207)
Q Consensus       114 l~~~~~---~~iiLVTs~yHm  131 (207)
                      ++++|+   ...++||+....
T Consensus        87 ~~~~g~~~~GD~vVv~~g~~~  107 (122)
T 3khd_A           87 AKQRNMAKVGDSVIAIHGIKE  107 (122)
T ss_dssp             HHHTTSSCTTCEEEEEEC-CC
T ss_pred             HHHCCCCCCCCEEEEEECCCC
T ss_conf             998699999898999837679


No 31 
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:169-300)
Probab=66.37  E-value=8.7  Score=18.12  Aligned_cols=99  Identities=9%  Similarity=-0.022  Sum_probs=68.1

Q ss_pred             HHHHHHHHCCCCCEECCCCCCCCCH----HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9999999689982451587654678----999998765158861332204666660256999999998649981898511
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHHSVSK----DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH  127 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~~~~~----~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs  127 (207)
                      .+-.|+++|+....++++..+....    -+-.++.+.+.+++...........+-........+++....--..+++++
T Consensus         8 a~~~L~~~G~r~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~   87 (132)
T 3kjx_A            8 XAQAILKAGYRRIGFXGTKXPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREXTQAXLERSPDLDFLYYSN   87 (132)
T ss_dssp             HHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCC
T ss_conf             99999983998641006666556216778888898999729863211000113221233110223202565412453267


Q ss_pred             HHHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             442199999999862---9-9879996
Q gi|254780579|r  128 DYHMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       128 ~yHm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      +.....+...+++..   | ++.++.+
T Consensus        88 d~~a~~~l~~l~~~gi~vP~di~iigf  114 (132)
T 3kjx_A           88 DXIAAGGLLYLLEQGIDIPGQIGLAGF  114 (132)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred             CHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             215678999999869987887599996


No 32 
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293)
Probab=66.06  E-value=8.8  Score=18.08  Aligned_cols=97  Identities=9%  Similarity=0.005  Sum_probs=61.6

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             999999689982451587654678---99999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|.++|.....++++.......   .+-.++.+.+.+++...+...... .+.+........... ...+.++++++.
T Consensus         9 ~~~L~~~G~r~I~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~aii~~~~~   86 (130)
T 2o20_A            9 TKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGN-YSYEQGKALAERLLE-RGATSAVVSHDT   86 (130)
T ss_dssp             HHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSC-CSHHHHHHHHHHHHH-TTCCEEEESCHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECC-CHHHHHHHHHHHHHH-HCCCCEECCCCH
T ss_conf             999987188764433478778219999999999999849998855699556-247777999999864-034520013556


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             2199999999862---9-98799964
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      ++..++..+++..   | |+.++.+-
T Consensus        87 ~a~~~~~~l~~~g~~iP~di~ii~fd  112 (130)
T 2o20_A           87 VAVGLLSAMMDKGVKVPEDFEIISGA  112 (130)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             55554389998289888976999837


No 33 
>>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} (A:)
Probab=65.52  E-value=9  Score=18.02  Aligned_cols=95  Identities=12%  Similarity=0.019  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC--------------HHHEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999968998245158765467899999876515886--------------1332204666660256999999998
Q gi|254780579|r   50 IERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA--------------ECCIDIGYKALNTEGNAQEASAWAE  115 (207)
Q Consensus        50 i~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~--------------~~~I~~e~~s~~T~ena~~~~~~l~  115 (207)
                      ++..+++.++  +++|++-|.+....-++.+...+...|++              +++++.-..+..|. +.....+.++
T Consensus        37 i~~i~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~-~~~~~~~~ak  113 (200)
T 1vim_A           37 VGEMIKLIDS--ARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETT-SVVNISKKAK  113 (200)
T ss_dssp             HHHHHHHHHH--SSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHEECCCCEEEEECCCCCCH-HHHHHHHHHH
T ss_conf             9999999971--995899931642434233101222333222223210330002566156512332202-3799999998


Q ss_pred             HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             6499818985114421999999998629987999641676
Q gi|254780579|r  116 KNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus       116 ~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                      ++|. +++.+|+..+.+=+    +.+  |+ ++.+|....
T Consensus       114 ~~g~-~vi~IT~~~~s~l~----~~a--d~-~i~~~~~~~  145 (200)
T 1vim_A          114 DIGS-KLVAVTGKRDSSLA----KMA--DV-VMVVKGKMK  145 (200)
T ss_dssp             HHTC-EEEEEESCTTSHHH----HHC--SE-EEECCSSCT
T ss_pred             HHCC-CCEEEEECCCCCCC----CCC--CE-EEEECCCCC
T ss_conf             6235-64366403554432----336--67-999668864


No 34 
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293)
Probab=64.74  E-value=9.3  Score=17.93  Aligned_cols=98  Identities=8%  Similarity=-0.025  Sum_probs=68.3

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHH-HEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             9999996899824515876546789--999987651588613-3220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAEC-CIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~-~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|.++|+.+..++++.....+..  +...+.+.+.+++.. .........+.........+++...+....++++++.
T Consensus         9 ~~~L~~~G~r~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~   88 (132)
T 3h5o_A            9 TRHLLSRGKRRIGFLGAQLDERVXKRLDGYRAALDAADCRDAGLEWLDPQPSSXQXGADXLDRALAERPDCDALFCCNDD   88 (132)
T ss_dssp             HHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHH
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCH
T ss_conf             99999759970878640266542200025677776304554310000246236778999999999549998389972645


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             2199999999862---9-9879996
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      -..-++..++...   | ++.++.+
T Consensus        89 ~a~~~~~~l~~~g~~vP~di~ii~f  113 (132)
T 3h5o_A           89 LAIGALARSQQLGIAVPERLAIAGF  113 (132)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             6665434687639988986799998


No 35 
>>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A (D:360-499)
Probab=63.40  E-value=9.9  Score=17.77  Aligned_cols=87  Identities=14%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE--CCCCCCCHHHHHHHHHH
Q ss_conf             5687899946985799999999996899824515876546789999987651588613322--04666660256999999
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID--IGYKALNTEGNAQEASA  112 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~--~e~~s~~T~ena~~~~~  112 (207)
                      -++++|||++-...   .|..+.+.-+..+|+.--     ......+......|+....+.  ..+...++.+-..++.+
T Consensus        33 l~a~aIvv~T~sG~---ta~~iSr~RP~~pI~a~t-----~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~i~~~~~  104 (140)
T 3hqn_D           33 TKAKAMVVLSNTGR---SARLVAKYRPNCPIVCVT-----TRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVE  104 (140)
T ss_dssp             HTCSEEEEECSSSH---HHHHHHHTCCSSCEEEEE-----SCHHHHHHGGGSTTEEEEECCHHHHCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             79988999889729---999999559699999988-----9889998875125838999666556652169999999999


Q ss_pred             HHHHCCC----CEEEEECCHH
Q ss_conf             9986499----8189851144
Q gi|254780579|r  113 WAEKNNF----HHVLIVTHDY  129 (207)
Q Consensus       113 ~l~~~~~----~~iiLVTs~y  129 (207)
                      +++++|+    ..+++|+.+.
T Consensus       105 ~l~~~g~~~~Gd~Vviv~g~~  125 (140)
T 3hqn_D          105 FAKSKGYVQTGDYCVVIHADH  125 (140)
T ss_dssp             HHHHTTSCCTTCEEEEEEECC
T ss_pred             HHHHCCCCCCCCEEEEEECCC
T ss_conf             999879998979999984899


No 36 
>>1vr9_A CBS domain protein/ACT domain protein; TM0892, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Thermotoga maritima} (A:80-213)
Probab=62.94  E-value=10  Score=17.72  Aligned_cols=84  Identities=12%  Similarity=0.032  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHCCCCCEECCCCCC----CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             999999999968998245158765----4678999998765158861332204666660256999999998649981898
Q gi|254780579|r   49 RIERAFELLENQIGEKIFISGVHH----SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLI  124 (207)
Q Consensus        49 Ri~~a~~L~~~g~~~~ii~SG~~~----~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiL  124 (207)
                      -+.+|+++..+.....+.+...+.    -.+..++.+..............-+...-+..++...+.+.|.+++.+.+.+
T Consensus        11 tv~~a~~~l~~~~~~~~pVvd~~~~lvGiit~~di~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV   90 (134)
T 1vr9_A           11 NITHALLLFLEHQEPYLPVVDEEXRLKGAVSLHDFLEALIEALAXDVPGIRFSVLLEDKPGELRKVVDALALSNINILSV   90 (134)
T ss_dssp             BHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC------------------------------------
T ss_pred             CHHHHHHHHHHCCCCEEEEEEECCEEEEEEEHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             89999999997398678999689999895698999999987402455772467752799988999999999859918899


Q ss_pred             ECCHHHHH
Q ss_conf             51144219
Q gi|254780579|r  125 VTHDYHMP  132 (207)
Q Consensus       125 VTs~yHm~  132 (207)
                      |.+..+..
T Consensus        91 vd~~~~~~   98 (134)
T 1vr9_A           91 ITTRSGDG   98 (134)
T ss_dssp             --------
T ss_pred             EEEECCCC
T ss_conf             98845898


No 37 
>>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfamily; 2.20A {Leptospira interrogans} (A:1-180,A:287-366)
Probab=62.93  E-value=10  Score=17.72  Aligned_cols=91  Identities=13%  Similarity=0.105  Sum_probs=37.7

Q ss_pred             HHHH-CCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-------C
Q ss_conf             9996-8998245158765467899999876515886133220466666025699999999864998189851-------1
Q gi|254780579|r   56 LLEN-QIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVT-------H  127 (207)
Q Consensus        56 L~~~-g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVT-------s  127 (207)
                      +.+. +...++.+.|..-+...  ............+..|.+..-...-.+.....    .+-. ..++++.       .
T Consensus       137 ~~~~~~~~~~v~l~G~S~Gg~~--a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~----~~i~-~P~li~~g~~D~~vp  209 (260)
T 2pl5_A          137 LVESLGIEKLFCVAGGSMGGMQ--ALEWSIAYPNSLSNCIVMASTAGKGKELTAAL----SNAT-CRFLVVSYSSDWLYP  209 (260)
T ss_dssp             HHHHTTCSSEEEEEEETHHHHH--HHHHHHHSTTSEEEEEEESCCSCSHHHHHHHH----TTCC-SEEEEEEETTCCSSC
T ss_pred             HHHHHCCCEEEEEEEHHHHHHH--HHHHHHHCCHHHHEEECCCCCCCCCCCHHHHH----HHCC-CCEEEEEECCCCCCC
T ss_conf             9997187716776502467899--99999829506540002346543332699999----6389-988999857651769


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             44219999999986299879996416
Q gi|254780579|r  128 DYHMPRTFLELQRINSTVQFIPYPII  153 (207)
Q Consensus       128 ~yHm~RA~~~f~~~~p~i~i~~~pv~  153 (207)
                      ..|..+-...+++.....++..+|-.
T Consensus       210 ~~~~~~~~~~l~~~~~~~~~~~~~~~  235 (260)
T 2pl5_A          210 PAQSREIVKSLEAADKRVFYVELQSG  235 (260)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             99999999999747997699995899


No 38 
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239)
Probab=62.14  E-value=10  Score=17.63  Aligned_cols=98  Identities=12%  Similarity=0.055  Sum_probs=68.0

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH--HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             999999689982451587654678--999998765158861332204666660256999999998649981898511442
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK--DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH  130 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~--~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH  130 (207)
                      +-.|.++|+....++++.....+.  -+-.+..+.+.+........ ..+.+..+......+++....-...++++++..
T Consensus         9 ~~~L~~~G~r~i~~i~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~   87 (130)
T 3k9c_A            9 VDHLTELGHRNIAHIDGADAPGGADRRAGFLAAXDRHGLSASATVV-TGGTTETEGAEGXHTLLEXPTPPTAVVAFNDRC   87 (130)
T ss_dssp             HHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEE-CCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHH
T ss_pred             HHHEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHH
T ss_conf             2210002353112101224653125778898888763255421223-456641367889999875035751332141021


Q ss_pred             HHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             199999999862---9-98799964
Q gi|254780579|r  131 MPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       131 m~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      ...++..+++..   | ++.|+.+-
T Consensus        88 a~~~~~~l~~~g~~iP~di~ii~fd  112 (130)
T 3k9c_A           88 ATGVLDLLVRSGRDVPADISVVGYD  112 (130)
T ss_dssp             HHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             CCCCEEECCCCCCEEEECCCCCCCC
T ss_conf             1442000014684455222245656


No 39 
>>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:374-511)
Probab=61.40  E-value=11  Score=17.55  Aligned_cols=88  Identities=10%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH
Q ss_conf             45687899946985799999999996899824515876546789999987651588613322046666602569999999
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW  113 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~  113 (207)
                      .-++++|||++-.-.   .|..+.+.-+..+|+.--     ......+......|+..   .+-+...++.+....+.++
T Consensus        34 ~l~akaIvv~T~sG~---ta~~isk~RP~~pI~a~T-----~~~~~~r~l~l~~GV~p---~~~~~~~~~~~~~~~~~~~  102 (138)
T 3gg8_A           34 CVNAAIILALTETGQ---TARLIAKYRPMQPILALS-----ASESTIKHLQVIRGVTT---MQVPSFQGTDHVIRNAIVV  102 (138)
T ss_dssp             HHTCSEEEEECSSSH---HHHHHHHTCCSSCEEEEE-----SCHHHHHHGGGSTTEEE---EECCC--CHHHHHHHHHHH
T ss_pred             HHCCCEEEEECCCCH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHECCCEEE---EECCCCCCHHHHHHHHHHH
T ss_conf             506688999859848---999999439799989986-----98799987644077699---9808989999999999999


Q ss_pred             HHHCCC---CEEEEECCHHHHH
Q ss_conf             986499---8189851144219
Q gi|254780579|r  114 AEKNNF---HHVLIVTHDYHMP  132 (207)
Q Consensus       114 l~~~~~---~~iiLVTs~yHm~  132 (207)
                      ++++|+   ...++|++...+.
T Consensus       103 ~~~~g~~~~GD~vVvv~G~~~~  124 (138)
T 3gg8_A          103 AKERELVTEGESIVAVHGMKEE  124 (138)
T ss_dssp             HHHTTSCCTTCEEEEEEEC---
T ss_pred             HHHCCCCCCCCEEEEEECCCCC
T ss_conf             9986998996989999476699


No 40 
>>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} (A:374-487,A:649-729)
Probab=61.26  E-value=11  Score=17.54  Aligned_cols=97  Identities=8%  Similarity=-0.033  Sum_probs=53.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC-----------CCCCHHHHHHHHHH----HCCCCHHHEECCC
Q ss_conf             45687899946985799999999996899824515876-----------54678999998765----1588613322046
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH-----------HSVSKDILLQKIPI----RQDLAECCIDIGY   98 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~-----------~~~~~~~~~~~~~~----~~~i~~~~I~~e~   98 (207)
                      .....-|+|.|||+-=+..|..|.+.|....|+=.+..           +...+......+..    ........+.+  
T Consensus        13 ~~~~k~VlVIGaGPAGLeAA~~LarrG~~VtLiE~~~~iGG~v~~~~~~pg~~~~~~~~~~~~~ql~~l~~~~~~v~~--   90 (195)
T 1o94_A           13 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQL--   90 (195)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEE--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEE--
T ss_conf             566866999831678999999997579948999630542100123335775023456799999999998732646443--


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf             66660256999999998649981898511442199999
Q gi|254780579|r   99 KALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFL  136 (207)
Q Consensus        99 ~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~  136 (207)
                      .-.++..    +..-+.+.+...+++=|+-||-..++.
T Consensus        91 ~l~~~~~----~~~~i~~~~~D~ViiAT~l~~~l~~~~  124 (195)
T 1o94_A           91 ALGQKPM----TADDVLQYGADKVIIATTLWNELKARE  124 (195)
T ss_dssp             ECSCCCC----CHHHHHTSCCSEEEECCHHHHHHHHTG
T ss_pred             CCCCCEE----EEEEHHEECCCEEEEECHHHHHHHHHC
T ss_conf             0464036----531011014865899207999876534


No 41 
>>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Bacillus stearothermophilus} (A:46-219)
Probab=61.08  E-value=11  Score=17.52  Aligned_cols=109  Identities=11%  Similarity=-0.011  Sum_probs=57.1

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHHC--------CCCCEE-CCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH
Q ss_conf             568789994698-57999999999968--------998245-15876546789999987651588613322046666602
Q gi|254780579|r   35 PSVSAIVVLTGE-PIRIERAFELLENQ--------IGEKIF-ISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTE  104 (207)
Q Consensus        35 ~~~DaIVVLgGg-~~Ri~~a~~L~~~g--------~~~~ii-~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~  104 (207)
                      ...|.||++|-| ..=-..++.-.-.+        ..+++. .+..++     +.+...+......+..+++-.+|-+|.
T Consensus        25 ~g~~~vv~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~~~~~dn~Dp-----~~~~~~l~~l~~~~Tl~iviSKSG~T~   99 (174)
T 1b0z_A           25 NHSDALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISS-----TYISHLLDVLEGKDLSINVISKSGTTT   99 (174)
T ss_dssp             HHCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSTTSCEEEEESSSCCH-----HHHHHHHHHHTTCCEEEEEECSSSCCH
T ss_pred             HCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH-----HHHHHHHHCCCCCCEEEEEECCCCCCH
T ss_conf             269889998040676999999999876876422677637983189997-----999999832477760389844999866


Q ss_pred             H---HHHHHHHHHHHCCC-----C-EEEEECCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             5---69999999986499-----8-18985114421999999998629987999641
Q gi|254780579|r  105 G---NAQEASAWAEKNNF-----H-HVLIVTHDYHMPRTFLELQRINSTVQFIPYPI  152 (207)
Q Consensus       105 e---na~~~~~~l~~~~~-----~-~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv  152 (207)
                      |   |++..++|+++.+.     + .++++|.+--.-|....  +.  +.++.+.|-
T Consensus       100 ET~~~~~~~~~~l~~~~~~~~~~~~~~v~tt~~~~~l~~~a~--~~--~~~~f~~~~  152 (174)
T 1b0z_A          100 EPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLAD--QE--GYETFVIPD  152 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHGGGEEEEECSSCSHHHHHHH--HH--TCEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHCEECCCCCHHHHHHHHHH--HH--HHHHHHHHH
T ss_conf             788889999999987304266652611023331334443212--67--766665421


No 42 
>>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} (A:218-446)
Probab=60.78  E-value=11  Score=17.49  Aligned_cols=54  Identities=9%  Similarity=0.033  Sum_probs=21.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCEE-CC--CCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             78999469857999999999968998245-15--87654678999998765158861
Q gi|254780579|r   38 SAIVVLTGEPIRIERAFELLENQIGEKIF-IS--GVHHSVSKDILLQKIPIRQDLAE   91 (207)
Q Consensus        38 DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii-~S--G~~~~~~~~~~~~~~~~~~~i~~   91 (207)
                      +++|.++||.+=.-.+.-+.+......+. ++  -+.....+.+.++..+...|++-
T Consensus        25 ~v~v~~SGG~DSs~ll~l~~~~~~~~~i~~v~~~~g~~~~~~~~~a~~~a~~lgi~~   81 (229)
T 2vxo_A           25 KVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQV   81 (229)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCCSSTTHHHHHHHHHTTCCE
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             513663057513889999998504364379995633478655999999999849976


No 43 
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285)
Probab=58.77  E-value=12  Score=17.27  Aligned_cols=96  Identities=15%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             99999968998245158765467---899999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|+++|+....+++|......   ..+-+++.+.+.+++...+.....+...  -.....+++....-...++++++.
T Consensus         9 ~~~L~~~G~r~I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~   86 (130)
T 3ctp_A            9 FDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVK--MLEEDINSMKDIVNYDGIFVFNDI   86 (130)
T ss_dssp             HHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGG--GGGCCCTTGGGGGGSSEEEESSHH
T ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHCCHH
T ss_conf             999998699669996463454168888876201366513562223210024577--899999998505599845524658


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             2199999999862---9-9879996
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      ...-++..+++.+   | ++.++.+
T Consensus        87 ~A~~~~~~l~~~g~~ip~di~iigf  111 (130)
T 3ctp_A           87 AAATVMRALKKRGVSIPQEVQIIGF  111 (130)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred             HHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf             7899999999849998843332124


No 44 
>>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387)
Probab=58.20  E-value=12  Score=17.21  Aligned_cols=90  Identities=8%  Similarity=-0.070  Sum_probs=38.8

Q ss_pred             HHHHHHHHCCCCCEECCCCCC--CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             999999968998245158765--467899999876515886133220466666025699999999864998189851144
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHH--SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~--~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      ..+++.++...+++.+-+.+.  ..+..+.++..+.+.|..-.......-.. +..+......-++..+-+=++++.+.-
T Consensus         8 ala~~l~~~g~kkVaII~~d~~yG~~~~~~f~~~l~~~G~~V~~~~~i~~~~-~~~d~~~~i~kik~a~pdvVi~~~~~~   86 (200)
T 3i45_A            8 MLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPAL-YKLDAGPTVQALQQAEPEGLFNVLFGA   86 (200)
T ss_dssp             HHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCT-TCCCHHHHHHHHHHTCCSEEEECCCTT
T ss_pred             HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf             9999988628717854478967889999988877752366136887664026-651167898888860983899993337


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             2199999999862
Q gi|254780579|r  130 HMPRTFLELQRIN  142 (207)
Q Consensus       130 Hm~RA~~~f~~~~  142 (207)
                      ........+++..
T Consensus        87 ~a~~~ikqa~~~G   99 (200)
T 3i45_A           87 DLPKFVREGRVRG   99 (200)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC
T ss_conf             8999999999818


No 45 
>>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:110-246)
Probab=57.90  E-value=12  Score=17.18  Aligned_cols=98  Identities=12%  Similarity=-0.037  Sum_probs=68.2

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             9999996899824515876546789--99998765158861332204666660256999999998649981898511442
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH  130 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH  130 (207)
                      +-.|.++|+....+++|.....+..  +-....+.+.+.............+..+........+..++. ..++++++..
T Consensus        12 ~~~L~~~G~~~i~~l~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ai~~~~D~~   90 (137)
T 2fqx_A           12 ALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGV-NVIFQVAGGT   90 (137)
T ss_dssp             HHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTC-CEEEEECGGG
T ss_pred             HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEECCCCC
T ss_conf             974403787469996265662157899999999997399736876415875774589999999862699-7999747886


Q ss_pred             HHHHHHHHHHHC--C-CCEEEEEE
Q ss_conf             199999999862--9-98799964
Q gi|254780579|r  131 MPRTFLELQRIN--S-TVQFIPYP  151 (207)
Q Consensus       131 m~RA~~~f~~~~--p-~i~i~~~p  151 (207)
                      ..-+...+++.+  | |+.++.+-
T Consensus        91 A~g~~~al~~~g~~P~di~iig~d  114 (137)
T 2fqx_A           91 GNGVIKEARDRRLNGQDVWVIGVD  114 (137)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             616999999875146985899984


No 46 
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:115-246)
Probab=57.21  E-value=13  Score=17.11  Aligned_cols=97  Identities=12%  Similarity=-0.008  Sum_probs=62.0

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH-HHHHHHHHCCCCEEEEECCH
Q ss_conf             99999968998245158765467---899999876515886133220466666025699-99999986499818985114
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQ-EASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~-~~~~~l~~~~~~~iiLVTs~  128 (207)
                      +-.|.++|+.+..++++......   .-+-.+..+.+.+++.......... .+.+.+. ....++...+-...++++++
T Consensus         9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aii~~~d   87 (132)
T 3k4h_A            9 AEYLISLGHKQIAFIGGGSDLLVTRDRLAGXSDALKLADIVLPKEYILHFD-FSRESGQQAVEELXGLQQPPTAIXATDD   87 (132)
T ss_dssp             HHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC-SSHHHHHHHHHHHHTSSSCCSEEEESSH
T ss_pred             HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             777765315406999437775066655455411034302466520022333-2224799999999946999978974585


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             42199999999862---9-9879996
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      .....+...++...   | ++.++.+
T Consensus        88 ~~a~~~~~~l~~~g~~iP~di~iigf  113 (132)
T 3k4h_A           88 LIGLGVLSALSKKGFVVPKDVSIVSF  113 (132)
T ss_dssp             HHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred             CCCCHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             21100279999808877751368630


No 47 
>>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:1-41,A:233-288,A:396-433)
Probab=55.60  E-value=14  Score=16.95  Aligned_cols=52  Identities=6%  Similarity=-0.229  Sum_probs=35.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             8999469857999999999968998245158765467899999876515886
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA   90 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~   90 (207)
                      =+||.|||..=+..|..|.+.|+.-.++=-.......-++.+.+.+.+.|+.
T Consensus         8 ~vvviG~G~~g~~~a~~l~~~g~~v~~ie~~~~~d~~l~~~l~~~l~~~Gv~   59 (135)
T 1d5t_A            8 DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYLGELPQGFARLSAIYGGT   59 (135)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSTTHHHHHHHHHHHHHTCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             8899895989999999999889979998899999689999999999852690


No 48 
>>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} (A:107-382)
Probab=55.20  E-value=14  Score=16.91  Aligned_cols=96  Identities=6%  Similarity=-0.056  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCH-------HHHHHHHHHHHHHCCC
Q ss_conf             579999999999689982451587654678999998765158861332204666660-------2569999999986499
Q gi|254780579|r   47 PIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNT-------EGNAQEASAWAEKNNF  119 (207)
Q Consensus        47 ~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T-------~ena~~~~~~l~~~~~  119 (207)
                      ..-+...+-...+.....+++.+.++...|..-+.......+.-+..+.+-..+...       -.-|...++++.++|-
T Consensus        82 KT~l~~~i~~~~~~~~~~~V~~~iger~~ev~e~~~~~~~~~~~~~t~vv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~  161 (276)
T 2r9v_A           82 KTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFAYSGR  161 (276)
T ss_dssp             HHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCC
T ss_conf             67889987876513577468863152277799999987424875504999977999999999998887412244440699


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             81898511442199999999862
Q gi|254780579|r  120 HHVLIVTHDYHMPRTFLELQRIN  142 (207)
Q Consensus       120 ~~iiLVTs~yHm~RA~~~f~~~~  142 (207)
                      +-+++..|-+..-||..+.....
T Consensus       162 ~Vlll~Dsltr~a~A~reis~~~  184 (276)
T 2r9v_A          162 DALVVYDDLSKHAVAYRQLSLLX  184 (276)
T ss_dssp             EEEEEEETHHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHC
T ss_conf             57999607188899999999873


No 49 
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242)
Probab=54.70  E-value=14  Score=16.86  Aligned_cols=99  Identities=12%  Similarity=-0.024  Sum_probs=61.8

Q ss_pred             HHHHHHH--CCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             9999996--899824515876546789--999987651588613322046666602569999999986499818985114
Q gi|254780579|r   53 AFELLEN--QIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~--g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      |-.|.++  |+.+..+++|.....+..  +-+.+.+.+.+.+...+.......+..+.......+++.++--..++++++
T Consensus         9 ~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~   88 (134)
T 3g1w_A            9 AYKXAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEA   88 (134)
T ss_dssp             HHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSH
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             99999971457619999312431289999999999987577663145751665358899999987403899888997774


Q ss_pred             HHHHHHHHHHHHHC-C-CCEEEEEE
Q ss_conf             42199999999862-9-98799964
Q gi|254780579|r  129 YHMPRTFLELQRIN-S-TVQFIPYP  151 (207)
Q Consensus       129 yHm~RA~~~f~~~~-p-~i~i~~~p  151 (207)
                      -..-.+...++... | ++.++.+-
T Consensus        89 ~~a~g~~~al~~~g~~~di~i~g~d  113 (134)
T 3g1w_A           89 NGGVGVGDAVRLESRAGEIQIISFD  113 (134)
T ss_dssp             HHHHHHHHHHHHTTCTTTSEEEEES
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             8999999999976999983999978


No 50 
>>3bq9_A Predicted rossmann fold nucleotide-binding domain-containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica OS145} (A:86-460)
Probab=54.63  E-value=14  Score=16.85  Aligned_cols=93  Identities=10%  Similarity=-0.105  Sum_probs=46.6

Q ss_pred             CCEEEEECCCH-----HHHHHHHHHHHH-CCCCCEECCCCCCCCCHHHHHHHHHH----------HCCCC----------
Q ss_conf             87899946985-----799999999996-89982451587654678999998765----------15886----------
Q gi|254780579|r   37 VSAIVVLTGEP-----IRIERAFELLEN-QIGEKIFISGVHHSVSKDILLQKIPI----------RQDLA----------   90 (207)
Q Consensus        37 ~DaIVVLgGg~-----~Ri~~a~~L~~~-g~~~~ii~SG~~~~~~~~~~~~~~~~----------~~~i~----------   90 (207)
                      ...|.|.||+.     .-.+.|.+|-+. +.....+++|++++.-++........          ..|+.          
T Consensus        58 ~~~V~Vfgsar~~~~~~~y~~A~elG~~La~~g~~ivTGGGpG~Meaa~~GA~~a~~~~~~~gG~siGi~~~~l~~ee~~  137 (375)
T 3bq9_A           58 EEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPP  137 (375)
T ss_dssp             CCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTTSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHCCC
T ss_conf             99887998489989979999999999999987997998986788878999887612556557855666467754221057


Q ss_pred             -----------------------HHHEECCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCHH
Q ss_conf             -----------------------13322046666602569999999986499----8189851144
Q gi|254780579|r   91 -----------------------ECCIDIGYKALNTEGNAQEASAWAEKNNF----HHVLIVTHDY  129 (207)
Q Consensus        91 -----------------------~~~I~~e~~s~~T~ena~~~~~~l~~~~~----~~iiLVTs~y  129 (207)
                                             ...+++-+-.--|.||+.++..|++....    --++|+-..|
T Consensus       138 N~~v~~li~~~~~~~Rk~~fv~~sda~IvlPGG~GTldElfe~Ltl~q~g~~~~~p~PiVL~G~~~  203 (375)
T 3bq9_A          138 NPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPAS  203 (375)
T ss_dssp             CTTCSEEEECSSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGG
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             877772799588999999999967989993898763999999999985322788871289978854


No 51 
>>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} (A:)
Probab=54.53  E-value=14  Score=16.84  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99946985799999999996899824515876546789999987651588613322046666602569999999986499
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF  119 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~  119 (207)
                      +....||..|.....+.+.....-.+...  .+..+.............+....+++-..--+|-+.+..+.+.++++|.
T Consensus        74 v~~~~gg~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dv~g~~viivDdii~TG~T~~~a~~~Lk~~Ga  151 (208)
T 1v9s_A           74 VAILRAGLVXVEGILKLVPHARVGHIGLY--RDPESLNPVQYYIKLPPDIAERRAFLLDPXLATGGSASLALSLLKERGA  151 (208)
T ss_dssp             EEETTTHHHHHHHHHTTCTTCEEEEEEEC-----------CEEEECCSCGGGSCEEEECSEESSSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCHHHHHHHHHHCCCCCCEEEEE--ECCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf             66642552467899998515554347898--2267888688766558653456699978066424779999999986599


Q ss_pred             CEEEEECCHHHH-HHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             818985114421-999999998629987999641676
Q gi|254780579|r  120 HHVLIVTHDYHM-PRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus       120 ~~iiLVTs~yHm-~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                      ++|.++.  .|. .-+...+.+.+++..++...++..
T Consensus       152 ~~I~~~~--~h~~~~a~~~i~~~~~~~~i~t~ti~~~  186 (208)
T 1v9s_A          152 TGVKLXA--ILAAPEGLERIAKDHPDTEVVVAAIDER  186 (208)
T ss_dssp             CSCEEEE--EEECHHHHHHHHHHCTTCEEEEEEECSE
T ss_pred             CCEEEEE--EEECHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             8469999--9854789999998787988999985687


No 52 
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230)
Probab=54.13  E-value=14  Score=16.80  Aligned_cols=98  Identities=8%  Similarity=-0.001  Sum_probs=63.9

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH-HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf             999999689982451587654678-9999987651588613322046666602569999999986499818985114421
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK-DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM  131 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~-~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm  131 (207)
                      +-.|+++|+....++++..+...+ .+-.+..+.+.+++...... ....+...-.....+++...+-...++++++...
T Consensus         9 ~~~L~~~G~~~i~~i~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a   87 (129)
T 3gyb_A            9 TKHLIDLGHTHIAHLRVGSGAGLRRFESFEATXRAHGLEPLSNDY-LGPAVEHAGYTETLALLKEHPEVTAIFSSNDITA   87 (129)
T ss_dssp             HHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCC-CSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHH
T ss_pred             CCHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHH
T ss_conf             000011022322000123202356677777899997430121123-3334377765566777651368635531253311


Q ss_pred             HHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             99999999862---9-98799964
Q gi|254780579|r  132 PRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       132 ~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      .+.+..+++.+   | ++.++..-
T Consensus        88 ~~~~~~l~~~g~~ip~di~ivgfd  111 (129)
T 3gyb_A           88 IGALGAARELGLRVPEDLSIIGYD  111 (129)
T ss_dssp             HHHHHHHHHHTCCTTTTCEEEEES
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             357899887633000110245425


No 53 
>>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} (A:1-124)
Probab=53.12  E-value=15  Score=16.70  Aligned_cols=108  Identities=7%  Similarity=-0.011  Sum_probs=71.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC--CCCC-----CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH
Q ss_conf             687899946985799999999996899824515--8765-----467899999876515886133220466666025699
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFIS--GVHH-----SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQ  108 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S--G~~~-----~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~  108 (207)
                      +-.++|-++||.|=.-.+.-|.++|+....+..  +...     .....+..+.+....+++-..+..+....+.+....
T Consensus         4 ~~kv~v~~SGG~DS~~~l~ll~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~v~~~~~~~~~~~~~~   83 (124)
T 2d13_A            4 LADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGEKEKEVEDLK   83 (124)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--CTTSHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
T ss_conf             24199991686999999999998598279999987288995605477899999999875999336624687228999999


Q ss_pred             HHHHHHHHCCCCEEEE--ECCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9999998649981898--511442199999999862998799
Q gi|254780579|r  109 EASAWAEKNNFHHVLI--VTHDYHMPRTFLELQRINSTVQFI  148 (207)
Q Consensus       109 ~~~~~l~~~~~~~iiL--VTs~yHm~RA~~~f~~~~p~i~i~  148 (207)
                      ..   ..+++...+..  +-++.++.......++.  |++.+
T Consensus        84 ~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--G~~~l  120 (124)
T 2d13_A           84 NV---LEGLKVDGIVAGALASRYQKERIENVAREL--GLKVY  120 (124)
T ss_dssp             HH---HHTBCCSEEECCCSSCHHHHHHHHHHHHHH--TCEEE
T ss_pred             HH---HHHHCCCEEEECCCHHHHHHHHHHHHHHHC--CCEEE
T ss_conf             99---996188659982001178899999889872--96898


No 54 
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:107-246)
Probab=52.94  E-value=15  Score=16.68  Aligned_cols=91  Identities=2%  Similarity=-0.060  Sum_probs=55.7

Q ss_pred             HCCCCCEECCCCCCCC---CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             6899824515876546---7899999876515886133220466666025699999999864998189851144219999
Q gi|254780579|r   59 NQIGEKIFISGVHHSV---SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTF  135 (207)
Q Consensus        59 ~g~~~~ii~SG~~~~~---~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~  135 (207)
                      +|+.+..+++|.....   ...+-.+..+.+.+........ ....+..+-......+++.+.--+.++++++.....+.
T Consensus        23 ~g~~~i~~i~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nd~~a~g~~  101 (140)
T 2fn9_A           23 AKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ-SAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAM  101 (140)
T ss_dssp             CSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEE-ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf             65551465138877505789998999998651455622688-33300278999999998513222236765761003389


Q ss_pred             HHHHHHCC-CCEEEEE
Q ss_conf             99998629-9879996
Q gi|254780579|r  136 LELQRINS-TVQFIPY  150 (207)
Q Consensus       136 ~~f~~~~p-~i~i~~~  150 (207)
                      ..+++..| ++.++.+
T Consensus       102 ~al~~~g~~di~vig~  117 (140)
T 2fn9_A          102 KACEAAGRTDIYIFGF  117 (140)
T ss_dssp             HHHHHTTCTTCEEECC
T ss_pred             HHHHHHCCCCCCCCCC
T ss_conf             9999737467531368


No 55 
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:99-232)
Probab=52.33  E-value=15  Score=16.62  Aligned_cols=98  Identities=10%  Similarity=-0.058  Sum_probs=60.1

Q ss_pred             HHHHHHHCCCCCEECCCCCCC----CC----HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             999999689982451587654----67----8999998765158861332204666660256999999998649981898
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHS----VS----KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLI  124 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~----~~----~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiL  124 (207)
                      +-.|+++|.....++++....    ..    ..+.++..+.+.+++-..........+-..-.....+++....--..++
T Consensus         8 ~~~L~~~G~~~I~~i~~~~~~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii   87 (134)
T 2h0a_A            8 GAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF   87 (134)
T ss_dssp             HHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999852871499944786421000589988876531133210112212100024210134555443231136774341


Q ss_pred             ECCHHHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             511442199999999862---9-9879996
Q gi|254780579|r  125 VTHDYHMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       125 VTs~yHm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      ++++......+..++...   | ++.|+.+
T Consensus        88 ~~~d~~a~~~~~~l~~~g~~vp~di~ii~~  117 (134)
T 2h0a_A           88 AGADQVALGVLEEAVRLGLTPGRDVRVLGF  117 (134)
T ss_dssp             CSSHHHHHHHHHHHHTTSCTTTTSEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             210477888888886427642134322122


No 56 
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:113-257)
Probab=52.27  E-value=15  Score=16.62  Aligned_cols=94  Identities=13%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             HHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHH-HHHHCC--CCEEEEECCHH
Q ss_conf             99968998245158765467---8999998765158861332204666660256999999-998649--98189851144
Q gi|254780579|r   56 LLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASA-WAEKNN--FHHVLIVTHDY  129 (207)
Q Consensus        56 L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~-~l~~~~--~~~iiLVTs~y  129 (207)
                      |.++|+....++.|......   ...-....+.+.+.+-..+... ...++.+.+....+ ++..++  --..++++++.
T Consensus        23 l~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~  101 (145)
T 2fvy_A           23 LNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD-TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA  101 (145)
T ss_dssp             TTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEE-ECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHH
T ss_pred             CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE-ECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHH
T ss_conf             114798269999478666505777777999998629863232366-2211267888888876655314776310112047


Q ss_pred             HHHHHHHHHHHHCC-CCEEEEE
Q ss_conf             21999999998629-9879996
Q gi|254780579|r  130 HMPRTFLELQRINS-TVQFIPY  150 (207)
Q Consensus       130 Hm~RA~~~f~~~~p-~i~i~~~  150 (207)
                      ....+...+++..| ++.++.+
T Consensus       102 ~a~~~~~al~~~gp~di~ivg~  123 (145)
T 2fvy_A          102 MAMGAVEALKAHNKSSIPVFGV  123 (145)
T ss_dssp             HHHHHHHHHHHTTCTTSCEECS
T ss_pred             HHHHHHHHHHHCCCCCCEEEEC
T ss_conf             7789999999809998806745


No 57 
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=51.80  E-value=16  Score=16.57  Aligned_cols=99  Identities=17%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             999999689982451587654678---99999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|+++|+....+++|.......   .+-..+.+.+.+++...........+-..-.....+++...+....++++++.
T Consensus        10 ~~~L~~~G~~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~   89 (133)
T 2rgy_A           10 AATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDT   89 (133)
T ss_dssp             HHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf             45676530011000246755443111121367899872886431212234567888999986530135687534346836


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             2199999999862---9-98799964
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      ....++...+...   | ++.++..-
T Consensus        90 ~a~~~~~~l~~~g~~vP~di~ivgfd  115 (133)
T 2rgy_A           90 XAVSALARFQQLGISVPGDVSVIGYD  115 (133)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             76655677765045578521022146


No 58 
>>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} (A:1-39,A:103-166)
Probab=50.69  E-value=16  Score=16.47  Aligned_cols=52  Identities=10%  Similarity=-0.008  Sum_probs=36.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-CCHHHHHHHHHHHCCCC
Q ss_conf             89994698579999999999689982451587654-67899999876515886
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-VSKDILLQKIPIRQDLA   90 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-~~~~~~~~~~~~~~~i~   90 (207)
                      -++|.|||+.=+..|..|.+.+....++=...... ..-++.....+.+.|+.
T Consensus         4 ~~~iiG~g~~g~~~a~~~~~~~~~vt~i~~~~~~~~~~i~~~l~~~l~~~gI~   56 (103)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVTEVTRDLMEAREACGAT   56 (103)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999957999999999997899999994699987689999999977642763


No 59 
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292)
Probab=50.17  E-value=16  Score=16.42  Aligned_cols=97  Identities=12%  Similarity=0.103  Sum_probs=65.7

Q ss_pred             HHHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             999999968998245158765467---89999987651588613322046666602569999999986499818985114
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      .+-.|+++|+....+++|......   ..+-++..+.+.+++...+....  .+..........++....-...++++++
T Consensus         8 a~~~l~~~G~r~I~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ai~~~~d   85 (130)
T 1jye_A            8 GVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGD--WSAMSGFQQTMQMLNEGIVPTAMLVAND   85 (130)
T ss_dssp             HHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECC--SSHHHHHHHHHHHHHTTCCCSEEEESSH
T ss_pred             HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf             99999975996699994774322899999999999997599864343477--5177799999999735999836874888


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             42199999999862---9-9879996
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      .....++..++...   | ++.++.+
T Consensus        86 ~~a~~~l~~l~~~g~~ip~di~ivgf  111 (130)
T 1jye_A           86 QMALGAMRAITESGLRVGADISVVGY  111 (130)
T ss_dssp             HHHHHHHHHHHHTTCCBTTTBEEECS
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             99999999999808978998699983


No 60 
>>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:207-367)
Probab=50.10  E-value=17  Score=16.41  Aligned_cols=89  Identities=6%  Similarity=-0.174  Sum_probs=51.0

Q ss_pred             CCCCCCEEEEECCCHHHH--H-HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH
Q ss_conf             545687899946985799--9-9999999689982451587654678999998765158861332204666660256999
Q gi|254780579|r   33 DHPSVSAIVVLTGEPIRI--E-RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQE  109 (207)
Q Consensus        33 ~~~~~DaIVVLgGg~~Ri--~-~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~  109 (207)
                      .-.+++-|+++|.|....  . .+..|.+.+..+....+........       .... -+++.+++-..+..|.|....
T Consensus        12 ~l~~a~~I~i~G~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~d~vi~iS~sg~t~e~~~~   83 (161)
T 2poc_A           12 SLNDQKSLLLLGRGYQFATALEGALKIKEISYMHSEGVLAGELKHGI-------LALV-DEDLPIIAFATRDSLFPKVMS   83 (161)
T ss_dssp             GGGGCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEETTCC-------------------CCEEEECCGGGCCHHHHH
T ss_pred             HHCCCCCEEEECCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHCCH-------HHHC-CCCCCEEEEECCCCHHHHHHH
T ss_conf             52356527997687885057899999862257314457789986040-------5415-699744788358710344454


Q ss_pred             HHHHHHHCCCCEEEEECCHHH
Q ss_conf             999998649981898511442
Q gi|254780579|r  110 ASAWAEKNNFHHVLIVTHDYH  130 (207)
Q Consensus       110 ~~~~l~~~~~~~iiLVTs~yH  130 (207)
                      ..+.++++|.+ ++++|+...
T Consensus        84 ~~~~~k~~g~~-vi~It~~~~  103 (161)
T 2poc_A           84 AIEQVTARDGR-PIVICNEGD  103 (161)
T ss_dssp             HHHHHHHTTCC-CEEEEETTC
T ss_pred             HHHHHHHCCCE-EEEEEECCC
T ss_conf             79999966981-899993784


No 61 
>>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} (A:)
Probab=50.06  E-value=17  Score=16.40  Aligned_cols=43  Identities=14%  Similarity=0.020  Sum_probs=28.7

Q ss_pred             CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             613322046666602569999999986499818985114421999
Q gi|254780579|r   90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus        90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      +.+.++.-.++..|.+- ..+.+.++++|. .+|.+|+.-+.+=+
T Consensus       108 ~~dlvI~iS~sG~t~~~-i~a~~~ak~~G~-~vI~iT~~~~S~l~  150 (243)
T 3cvj_A          108 NKDVIXIISNSGRNTVP-VEXAIESRNIGA-KVIAXTSXKHSQKV  150 (243)
T ss_dssp             TTCEEEEECSSCCSHHH-HHHHHHHHHHTC-EEEEEECHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHH-HHHHHHHHHCCC-EEEEEECCCCCCCC
T ss_conf             89989997789998999-999999998699-79999568887442


No 62 
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:109-239)
Probab=48.66  E-value=17  Score=16.27  Aligned_cols=97  Identities=9%  Similarity=-0.072  Sum_probs=64.2

Q ss_pred             HHHHHHCCCCCEECCCCCCCCCHH---HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             999996899824515876546789---99998765158861332204666660256999999998649981898511442
Q gi|254780579|r   54 FELLENQIGEKIFISGVHHSVSKD---ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH  130 (207)
Q Consensus        54 ~~L~~~g~~~~ii~SG~~~~~~~~---~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH  130 (207)
                      =.|.++|+....+++|........   ......+.+.+++....... ....+.+.-.....++........++++++..
T Consensus        10 ~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~   88 (131)
T 3clk_A           10 NLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIK-PGDYSYTSGEQAXKAFGKNTDLTGIIAASDXT   88 (131)
T ss_dssp             HHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEE-CCCSSHHHHHHHHHHHCTTCCCSEEEESSHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             44222332112234788322201445677777788708653200012-22101221113334566456674675324544


Q ss_pred             HHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             199999999862---9-98799964
Q gi|254780579|r  131 MPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       131 m~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      +..++..+++..   | ++.++.+-
T Consensus        89 a~~~~~~l~~~g~~iP~di~ii~fd  113 (131)
T 3clk_A           89 AIGILNQASSFGIEVPKDLSIVSID  113 (131)
T ss_dssp             HHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             3332201144456687422232467


No 63 
>>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:107-232)
Probab=48.11  E-value=18  Score=16.22  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=59.7

Q ss_pred             HHHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             99999999689982451587654678---999998765158861332204666660256999999998649981898511
Q gi|254780579|r   51 ERAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH  127 (207)
Q Consensus        51 ~~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs  127 (207)
                      ..+.+|+++|..+..++++.......   .+-.++.+.+.+.+..   .  .-.+..+......++++...-...+++++
T Consensus         6 ~~a~~ll~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ai~~~~   80 (126)
T 3hs3_A            6 KESIKLLSKKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYL---L--EETPENNPYISAQSALNKSNQFDAIITVN   80 (126)
T ss_dssp             HHHHHTSCTTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE---E--EECCSSCHHHHHHHHHHTGGGCSEEECSS
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE---E--EECCCCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf             888777644872699982662100467776789988643475301---3--20355448999999985478998899648


Q ss_pred             HHHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             442199999999862---9-9879996
Q gi|254780579|r  128 DYHMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       128 ~yHm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      +...-.....+++..   | ++.++.+
T Consensus        81 d~~a~~v~~~l~~~g~~ip~di~i~~f  107 (126)
T 3hs3_A           81 DLYAAEIIKEAKRRNLKIPDDFQLVGY  107 (126)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             588887989999749877864321430


No 64 
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237)
Probab=47.65  E-value=18  Score=16.17  Aligned_cols=98  Identities=5%  Similarity=0.007  Sum_probs=63.8

Q ss_pred             HHHHHHH--CCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9999996--8998245158765467---8999998765158861332204666660256999999998649981898511
Q gi|254780579|r   53 AFELLEN--QIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH  127 (207)
Q Consensus        53 a~~L~~~--g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs  127 (207)
                      +=.|.++  |+....+++|......   ...-+...+.+.+.+.... ......+..+....+++++..+.--..+++.+
T Consensus         9 ~~~L~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~   87 (133)
T 2ioy_A            9 AEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA-KQAADFDRSKGLSVMENILQAQPKIDAVFAQN   87 (133)
T ss_dssp             HHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE-EEECTTCHHHHHHHHHHHHHHCSCCCEEEESS
T ss_pred             HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEE-EECCCCCHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             99999866999879999799998699999999999998789980577-75164117999999999985696983999678


Q ss_pred             HHHHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf             4421999999998629-98799964
Q gi|254780579|r  128 DYHMPRTFLELQRINS-TVQFIPYP  151 (207)
Q Consensus       128 ~yHm~RA~~~f~~~~p-~i~i~~~p  151 (207)
                      +.....+...+++..| ++.++.+-
T Consensus        88 d~~a~g~~~al~~~gp~di~iig~d  112 (133)
T 2ioy_A           88 DEMALGAIKAIEAANRQGIIVVGFD  112 (133)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             0888877999998199987799853


No 65 
>>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli} (A:)
Probab=47.35  E-value=18  Score=16.14  Aligned_cols=97  Identities=8%  Similarity=-0.007  Sum_probs=51.3

Q ss_pred             CCCCEEEEECCCHHH-HHH--HHHHHHHCCCCCEECCCCC-------------CCCCHHHHHHHHHHHCCCCHHHEECCC
Q ss_conf             568789994698579-999--9999996899824515876-------------546789999987651588613322046
Q gi|254780579|r   35 PSVSAIVVLTGEPIR-IER--AFELLENQIGEKIFISGVH-------------HSVSKDILLQKIPIRQDLAECCIDIGY   98 (207)
Q Consensus        35 ~~~DaIVVLgGg~~R-i~~--a~~L~~~g~~~~ii~SG~~-------------~~~~~~~~~~~~~~~~~i~~~~I~~e~   98 (207)
                      .+++-|.+.|-|... +..  +..|.+.|..+..+..+..             ....+........... -+++.++.-.
T Consensus        39 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~iS  117 (196)
T 2yva_A           39 LNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALG-HAGDVLLAIS  117 (196)
T ss_dssp             HTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHC-CTTCEEEEEC
T ss_pred             HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHC-CCCCEEEEEE
T ss_conf             879979999788017768778989998874134333210344552001111353027788999999862-7884799984


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             666602569999999986499818985114421999
Q gi|254780579|r   99 KALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus        99 ~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      .+..|. +.....+.++++|. +++.+|+..+.+=+
T Consensus       118 ~sG~t~-~~~~~~~~ak~~g~-~~i~IT~~~~s~l~  151 (196)
T 2yva_A          118 TRGNSR-DIVKAVEAAVTRDM-TIVALTGYDGGELA  151 (196)
T ss_dssp             SSSCCH-HHHHHHHHHHHTTC-EEEEEECTTCHHHH
T ss_pred             CCCCCH-HHHHHHHHHHHHCC-EEEEEECCCCCHHH
T ss_conf             477520-25689999997348-18999825884577


No 66 
>>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} (A:)
Probab=46.16  E-value=19  Score=16.03  Aligned_cols=97  Identities=12%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC--------------HHHEECCCCCCCHHHHHHHHHHHH
Q ss_conf             999999999968998245158765467899999876515886--------------133220466666025699999999
Q gi|254780579|r   49 RIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA--------------ECCIDIGYKALNTEGNAQEASAWA  114 (207)
Q Consensus        49 Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~--------------~~~I~~e~~s~~T~ena~~~~~~l  114 (207)
                      .+++.+++.++  +.+|++-|.+....-++.+...+...|.+              ++.+++-..+.+| .+.....+.+
T Consensus        29 ~~~~~~~~l~~--a~~i~i~g~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~~-~~~~~~~~~a  105 (180)
T 1jeo_A           29 KLDSLIDRIIK--AKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRT-ESVLTVAKKA  105 (180)
T ss_dssp             HHHHHHHHHHH--CSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCCCH-HHHHHHHHHH
T ss_conf             99999999978--99399997788999999999999977972375212324678988889997699980-8999999999


Q ss_pred             HHCCCCEEEEECCHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             864998189851144-21999999998629987999641676667
Q gi|254780579|r  115 EKNNFHHVLIVTHDY-HMPRTFLELQRINSTVQFIPYPIISHDLE  158 (207)
Q Consensus       115 ~~~~~~~iiLVTs~y-Hm~RA~~~f~~~~p~i~i~~~pv~~~~~~  158 (207)
                      +++|.+ ++.+|++- .+.+.      +  + ...++|.......
T Consensus       106 k~~g~~-vI~iT~~~s~l~~~------a--d-~~l~~~~~~~~~~  140 (180)
T 1jeo_A          106 KNINNN-IIAIVXEXGNVVEF------A--D-LTIPLEVKKSKYL  140 (180)
T ss_dssp             HTTCSC-EEEEESSCCGGGGG------C--S-EEEECCCCCBTTB
T ss_pred             HHCCCC-EEEEECCCCCCHHH------C--C-EEEECCCCCCCCC
T ss_conf             975997-99996999975666------7--7-8886366765567


No 67 
>>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A* (A:)
Probab=46.06  E-value=19  Score=16.02  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=32.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHH------CCCCHHHEECCCCCCCHHH
Q ss_conf             87899946985799999999996899824515876546789999987651------5886133220466666025
Q gi|254780579|r   37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIR------QDLAECCIDIGYKALNTEG  105 (207)
Q Consensus        37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~------~~i~~~~I~~e~~s~~T~e  105 (207)
                      .++|||.|-.+-=+.+-++|.++|...+-++-|..-++-.+.-.|+.+.+      .++|.. .....+.-|+.-
T Consensus       133 ~g~IvvIGNAPTAL~~Lleli~~g~~~PaLVIG~PVGFV~AaESKe~L~~~~~~~~s~iP~I-t~~GrkGGS~vA  206 (231)
T 2afr_A          133 NESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYI-LTMGRKGGSTIA  206 (231)
T ss_dssp             TTCEEEESSCHHHHHHHHHHHHHHCCCCSEEEECCCCSSSHHHHHHHHHHHHHTTSCCCCEE-EECSSCCCHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEE-EEECCCCCHHHH
T ss_conf             98689973782799999999975887534289768775367989999985212357899989-971698749999


No 68 
>>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:189-390)
Probab=45.97  E-value=19  Score=16.01  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=26.5

Q ss_pred             EEEEECCCH--HHHHHHHHHHHHCCCCCEECCCC
Q ss_conf             899946985--79999999999689982451587
Q gi|254780579|r   39 AIVVLTGEP--IRIERAFELLENQIGEKIFISGV   70 (207)
Q Consensus        39 aIVVLgGg~--~Ri~~a~~L~~~g~~~~ii~SG~   70 (207)
                      .+.||||..  +.+.---.|++++.+..|++.|+
T Consensus         4 ~vaIlGGaKvsdKi~vl~~Ll~~~kvD~iiigG~   37 (202)
T 2cun_A            4 KIYVLGGAKVEDSLKVVENVLRRERADLVLTGGL   37 (202)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             5999745631016899998750024618997244


No 69 
>>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:1-155)
Probab=45.81  E-value=19  Score=16.00  Aligned_cols=59  Identities=17%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             61332204666660256999999998649981898511442199999999862998799964167666
Q gi|254780579|r   90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDL  157 (207)
Q Consensus        90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~  157 (207)
                      +++.++.-..+..| .+.....+.++++|. +++.+|+.-+.+=+    +.+  |. .+..|..+...
T Consensus        74 ~~dlvi~iS~sG~t-~~~~~~~~~a~~~g~-~~I~iT~~~~s~l~----~~a--d~-~l~~~~~~~~~  132 (155)
T 3eua_A           74 EKSLVILCSHSGNT-PETVKAAAFARGKGA-LTIAXTFKPESPLA----QEA--QY-VAQYDWGDEAL  132 (155)
T ss_dssp             TTEEEEEEESSSCC-HHHHHHHHHHHHTTC-EEEEEESCTTSHHH----HHS--SE-EEECCCSTTCC
T ss_pred             CCCEEEEEECCCCC-HHHHHHHHHHHHCCC-EEEEECCCCCCCHH----HCC--CC-CCEECCCCCCC
T ss_conf             99689998089998-679999986553022-13321276321112----124--54-40002364322


No 70 
>>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405)
Probab=45.78  E-value=19  Score=16.00  Aligned_cols=52  Identities=8%  Similarity=0.031  Sum_probs=36.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCC
Q ss_conf             899946985799999999996899824515876546----7899999876515886
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDLA   90 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i~   90 (207)
                      -|||.|||..=+..|.+|.+.+....+.+-.-.+..    .-.+.+.+.+.+.|+.
T Consensus        23 ~vviiG~g~~g~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~GV~   78 (199)
T 2gag_B           23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGHDHVAWAFARKANEMGVD   78 (199)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCE
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             99998926999999999996698786999838998865999999999999867989


No 71 
>>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:107-242)
Probab=45.70  E-value=19  Score=15.99  Aligned_cols=98  Identities=10%  Similarity=0.054  Sum_probs=60.2

Q ss_pred             HHHH-HHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEC
Q ss_conf             9999-999689982451587654678---999998765158861332204666660256999-99999864998189851
Q gi|254780579|r   52 RAFE-LLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQE-ASAWAEKNNFHHVLIVT  126 (207)
Q Consensus        52 ~a~~-L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~-~~~~l~~~~~~~iiLVT  126 (207)
                      .+++ |.++|+.+..+++|.......   .+-+++.+.+.+.....  ......++.+.+.. ..+++.++.--..++++
T Consensus        11 ~~~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~   88 (136)
T 3ksm_A           11 ALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRII--AAPYAGDDRGAARSEXLRLLKETPTIDGLFTP   88 (136)
T ss_dssp             HHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEE--ECCBCCSSHHHHHHHHHHHHHHCSCCCEEECC
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE--EEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             9998732279847999537677640778987799999867986420--21101022588999988764148876356625


Q ss_pred             CHHHHHHHHHHHHHHC-C-CCEEEEEE
Q ss_conf             1442199999999862-9-98799964
Q gi|254780579|r  127 HDYHMPRTFLELQRIN-S-TVQFIPYP  151 (207)
Q Consensus       127 s~yHm~RA~~~f~~~~-p-~i~i~~~p  151 (207)
                      ++.....+...+++.. | ++.++.+-
T Consensus        89 ~d~~a~g~~~al~~~g~p~di~v~g~d  115 (136)
T 3ksm_A           89 NESTTIGALVAIRQSGXSKQFGFIGFD  115 (136)
T ss_dssp             SHHHHHHHHHHHHHTTCTTSSEEEEES
T ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             719999999999975999992899878


No 72 
>>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} (A:)
Probab=45.13  E-value=20  Score=15.93  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=35.7

Q ss_pred             CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             613322046666602569999999986499818985114421999999998629987999641676667
Q gi|254780579|r   90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLE  158 (207)
Q Consensus        90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~  158 (207)
                      +++.+++-..+..|.+ .....+.++++|. +++++|+..+.+=+    +.+  +. ++.+|+......
T Consensus        92 ~~d~vI~iS~sG~t~~-~~~~~~~ak~~g~-~vI~IT~~~~s~l~----~~a--d~-~i~~~~~~~~~~  151 (201)
T 3fxa_A           92 KEDILILISKGGNTGE-LLNLIPACKTKGS-TLIGVTENPDSVIA----KEA--DI-FFPVSVSKEPDP  151 (201)
T ss_dssp             TTCEEEEECSSSCCHH-HHTTHHHHHHHTC-EEEEEESCTTSHHH----HHC--SE-EEECCCSCCCST
T ss_pred             CCCEEEEECCCCCCHH-HHHHHHHHHHCCC-CEEEEECCCCCCCC----CCC--CE-EEECCCCHHHCC
T ss_conf             8888999679998268-9999999998399-18998369999642----357--86-686541022014


No 73 
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=45.01  E-value=20  Score=15.92  Aligned_cols=98  Identities=15%  Similarity=0.100  Sum_probs=61.2

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH-HHHHHHHHCCCCEEEEECCH
Q ss_conf             999999689982451587654678---99999876515886133220466666025699-99999986499818985114
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQ-EASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~-~~~~~l~~~~~~~iiLVTs~  128 (207)
                      +-.|+++|+....+++|.......   .+.....+.+.+++......... ..+.++.. ....+++...-...++++++
T Consensus        10 ~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ai~~~~d   88 (133)
T 3brq_A           10 VAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANG-KWTPASGAEGVEXLLERGAKFSALVASND   88 (133)
T ss_dssp             HHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC-CSSHHHHHHHHHHHHTC--CCSEEEESSH
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             45543403655999957755653033545999999863987772035326-76521056777999855899872235880


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             42199999999862---9-98799964
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      .-...+...+++..   | ++.++.+-
T Consensus        89 ~~a~~~~~~l~~~g~~vP~di~i~~~d  115 (133)
T 3brq_A           89 DXAIGAXKALHERGVAVPEQVSVIGFD  115 (133)
T ss_dssp             HHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred             HHHHHHEHHHHHCCCCCCCCCCCCCCC
T ss_conf             888422443665498788640000556


No 74 
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=45.01  E-value=20  Score=15.92  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=62.4

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             999999689982451587654678---99999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|+++|+....+++|.......   .+.....+.+.+++...........+..+-......+++...-...++++++.
T Consensus        10 ~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~   89 (133)
T 3dbi_A           10 VAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVASNDD   89 (133)
T ss_dssp             HHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHH
T ss_pred             HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf             99999849985999978999866999999999999983999883147615764677999999998348886499967899


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             2199999999862---9-98799964
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      -...+...+++..   | ++.++.+-
T Consensus        90 ~a~~~~~~l~~~g~~vP~di~i~~~d  115 (133)
T 3dbi_A           90 XAIGAXKALHERGVAVPEQVSVIGFD  115 (133)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             99999999997599989986999989


No 75 
>>3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocarbons catabolism; HET: FAD; 1.80A {Pseudomonas putida} (A:1-107,A:243-312)
Probab=44.40  E-value=19  Score=16.06  Aligned_cols=30  Identities=10%  Similarity=0.069  Sum_probs=24.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             899946985799999999996899824515
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      -|||.|||.-=+..|.+|.+.++...|.+-
T Consensus         4 ~VvIIGgG~aG~~~a~~l~r~~~~~~I~vi   33 (177)
T 3ef6_A            4 HVAIIGNGVGGFTTAQALRAEGFEGRISLI   33 (177)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             889989889999999999806968838999


No 76 
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:160-293)
Probab=44.09  E-value=21  Score=15.84  Aligned_cols=98  Identities=12%  Similarity=0.065  Sum_probs=65.2

Q ss_pred             HHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             9999996899824515876546----789999987651588613322046666602569999999986499818985114
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      +-.|+++|+.+..+++|.....    ...+-....+.+.++............+..........++...+....+++.++
T Consensus        10 ~~~L~~~G~r~i~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (134)
T 2hsg_A           10 VQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTD   89 (134)
T ss_dssp             HHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEESSH
T ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf             64321368714799953643333102688999999998599988325884688778899999999834999857741785


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             42199999999862---9-9879996
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      -.....+...++..   | ++.++.+
T Consensus        90 ~~a~~~~~~l~~~~~~iP~di~vigf  115 (134)
T 2hsg_A           90 EMALGVIHGAQDRGLNVPNDLEIIGF  115 (134)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             88873238999729988898499997


No 77 
>>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} (A:)
Probab=43.61  E-value=21  Score=15.79  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=42.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHH--CCCCHHHEECCCCCCCHH
Q ss_conf             687899946985799999999996899824515876546789999987651--588613322046666602
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIR--QDLAECCIDIGYKALNTE  104 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~--~~i~~~~I~~e~~s~~T~  104 (207)
                      ..++|+|.|-.+-=+.+-++|.++|...+-++-|..-++-.+...|+.+.+  .++|.. +....+.-|+.
T Consensus       137 ~~~~IvvIGNAPTAL~~l~eli~~g~~~PaLVIG~PVGFV~a~ESKe~L~~~~~~vP~I-~~~GrkGGS~v  206 (219)
T 1f2v_A          137 LAGSVVAIGNAPTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESKDALAENSYGVPFA-IVRGRLGGSAM  206 (219)
T ss_dssp             HTTCEEEECSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEE-EECTTCCCHHH
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCEE-EEECCCCCHHH
T ss_conf             79978999586899999999998248888779876977557399999998478999979-98259876999


No 78 
>>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:340-475)
Probab=43.54  E-value=21  Score=15.78  Aligned_cols=83  Identities=13%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEC-CCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHH
Q ss_conf             4568789994698579999999999689982451-587654678999998765158861332204666660256999999
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFI-SGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASA  112 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~-SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~  112 (207)
                      .-++++|||++-+..   .|..+.+.-+..+|+. |      ......+......|+..   .+-....++.+-..++.+
T Consensus        32 ~l~a~aIiv~T~sG~---ta~~lS~~RP~~pI~a~t------~~~~~~r~l~l~~GV~p---~~~~~~~~~~~~~~~~~~   99 (136)
T 2e28_A           32 NLDVAAIVTPTVSGK---TPQMVAKYRPKAPIIAVT------SNEAVSRRLALVWGVYT---KEAPHVNTTDEMLDVAVD   99 (136)
T ss_dssp             HTTCSEEEEECSSSH---HHHHHHHTCCSSCEEEEE------SSHHHHHHGGGSTTEEE---EECCCCCSHHHHHHHHHH
T ss_pred             HCCCCEEEEECCCCC---HHHHHHHHCCCCCEEEEC------CCHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHH
T ss_conf             579999999899876---889998549899899986------98899997445368033---336766898999999999


Q ss_pred             HHHHCCC---CEEEEECCH
Q ss_conf             9986499---818985114
Q gi|254780579|r  113 WAEKNNF---HHVLIVTHD  128 (207)
Q Consensus       113 ~l~~~~~---~~iiLVTs~  128 (207)
                      +++++|+   ...++||+.
T Consensus       100 ~l~~~g~~~~gD~vVv~~g  118 (136)
T 2e28_A          100 AAVRSGLVKHGDLVVITAG  118 (136)
T ss_dssp             HHHHHTCCCTTCEEEEEEC
T ss_pred             HHHHCCCCCCCCEEEEEEC
T ss_conf             9998599899398999822


No 79 
>>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} (P:1-106,P:243-313)
Probab=42.99  E-value=21  Score=15.73  Aligned_cols=31  Identities=10%  Similarity=0.152  Sum_probs=26.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             8999469857999999999968998245158
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      -|||+|||.-=+..|.+|.+.+....|+..+
T Consensus         3 ~VvIIGgG~aGl~aA~~l~~~g~~~~i~~~~   33 (177)
T 3fg2_P            3 TVLIAGAGHAGFQVAVSLRQAKYPGRIALIN   33 (177)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSCEEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             9999898799999999998059578199996


No 80 
>>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I (A:1-43,A:166-287)
Probab=42.71  E-value=19  Score=15.99  Aligned_cols=28  Identities=21%  Similarity=0.130  Sum_probs=14.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             66025699999999864998189851144
Q gi|254780579|r  101 LNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus       101 ~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +.|.+++.++.+.+++.|++ +.++|.+.
T Consensus        40 ~~~~~da~e~I~~Lr~~Gi~-v~ilTGD~   67 (165)
T 3a1c_A           40 TGTLESAKPAVQELKRMGIK-VGMITGDN   67 (165)
T ss_dssp             CCCCTTHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCCCCCHHHHHHHHHHCCCC-EEEECCCC
T ss_conf             83131599999999876997-89975897


No 81 
>>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} (A:)
Probab=41.81  E-value=22  Score=15.62  Aligned_cols=53  Identities=9%  Similarity=0.093  Sum_probs=25.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             789994698579999999999689982451587654678999998765158861
Q gi|254780579|r   38 SAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE   91 (207)
Q Consensus        38 DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~   91 (207)
                      ++|+|.|-.+-=+.+-++|.++|..|-+++. ..-++-.+.-.++.+.+.++|.
T Consensus       128 ~~I~vIGNAPTAL~~l~eli~~g~~PalVIg-~PVGFV~A~ESKe~L~~~~iP~  180 (218)
T 1v9c_A          128 GAIVGVGNAPTFLLALVEAIRQGARPALVLG-MPVGFVNVLEAKRALMEAPVPW  180 (218)
T ss_dssp             SCEEEESSCTTTTHHHHHHHHTTCCCSEEEE-CCCSSSSHHHHHHHHTTSSSCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHCCCCE
T ss_conf             8579966716899999999855998608997-2876557599999998589998


No 82 
>>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} (C:1-143,C:303-333)
Probab=41.41  E-value=23  Score=15.58  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=33.6

Q ss_pred             EEEEECCCHHHHHHHHH-HHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCC
Q ss_conf             89994698579999999-9996899824515876546789999987651588613322046666
Q gi|254780579|r   39 AIVVLTGEPIRIERAFE-LLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKAL  101 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~-L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~  101 (207)
                      -||+--|..+|+.+|+. +.++|.+..|++.-       .+..+..+...|+....|+-...+.
T Consensus        18 rIvf~Eg~D~rvl~AA~~~~~~gia~pILvG~-------~~~I~~~a~~~~l~~~eiid~~~~~   74 (174)
T 2af4_C           18 TIALPETEDIRTLQAAAKILERGIADIVLVGN-------EADIKALAGDLDLSKAKIVDPKTYE   74 (174)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHTSCEEEEESC-------HHHHHHHHSSCCCTTSEEECTTSCT
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCEEEEEECC-------HHHHHHHHHHCCCCCCEEECCCCCH
T ss_conf             89986879979999999999869916999879-------9999999985899867787887541


No 83 
>>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:)
Probab=40.88  E-value=23  Score=15.53  Aligned_cols=83  Identities=13%  Similarity=0.009  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC--------------HHHEECCCCCCCHHHHHHHHHHH
Q ss_conf             7999999999968998245158765467899999876515886--------------13322046666602569999999
Q gi|254780579|r   48 IRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLA--------------ECCIDIGYKALNTEGNAQEASAW  113 (207)
Q Consensus        48 ~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~--------------~~~I~~e~~s~~T~ena~~~~~~  113 (207)
                      +.++..+++.++  +++|++.|.+....-++.+...+...|.+              +++++.-..+..| .+.....+.
T Consensus        25 ~~~~~i~~~i~~--a~~I~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~vI~iS~sG~t-~~~~~~~~~  101 (186)
T 1m3s_A           25 EEADQLADHILS--SHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGET-KSLIHTAAK  101 (186)
T ss_dssp             HHHHHHHHHHHH--CSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEEEECCCCC-HHHHHHHHH
T ss_conf             999999999974--99599997878999999999999850998677772113568899889998189986-467899999


Q ss_pred             HHHCCCCEEEEECCHHHHHHH
Q ss_conf             986499818985114421999
Q gi|254780579|r  114 AEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus       114 l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      ++++|. .++.+|+..+.+=+
T Consensus       102 ak~~g~-~ii~IT~~~~s~l~  121 (186)
T 1m3s_A          102 AKSLHG-IVAALTINPESSIG  121 (186)
T ss_dssp             HHHTTC-EEEEEESCTTSHHH
T ss_pred             HHHCCC-EEEEEECCCCCHHH
T ss_conf             998699-69999899999789


No 84 
>>3lm7_A Putative 4-hydroxy-2-oxoglutarate aldolase / 2- dehydro-3-deoxyphosphogluconate aldolase...; structural genomics, PSI-2; 1.90A {Yersinia enterocolitica} (A:)
Probab=40.67  E-value=23  Score=15.51  Aligned_cols=69  Identities=12%  Similarity=0.024  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHH--CCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99999999996--899824515876546789999987651588613322046666602569999999986499818
Q gi|254780579|r   49 RIERAFELLEN--QIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHV  122 (207)
Q Consensus        49 Ri~~a~~L~~~--g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~i  122 (207)
                      .++.|+.|.+.  +.+-+.+--|+-....|-..+...+.+.|     +.+|+..-=..+|.....+.+.+.|++++
T Consensus       146 ~v~tAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g-----~~lEPTGGIdl~N~~~I~~i~ldaGv~kv  216 (249)
T 3lm7_A          146 PVTTAIAXLKDXGGSSVKFFPXNGLDSIDEYRFVAEACAATG-----FWLEPTGGIDLDNFEQIVQIALDAGVTKV  216 (249)
T ss_dssp             EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTT-----CEEEECSSCCTTTHHHHHHHHHHHTCSCB
T ss_pred             CHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCC-----CEECCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             399999999973987145633675224999999999999669-----35577788467779999999998499844


No 85 
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292)
Probab=40.41  E-value=23  Score=15.49  Aligned_cols=98  Identities=11%  Similarity=-0.058  Sum_probs=62.1

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCHH---HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCH
Q ss_conf             9999996899824515876546789---999987651588613322046666602569999999-986499818985114
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSKD---ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW-AEKNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~~---~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~-l~~~~~~~iiLVTs~  128 (207)
                      +-.|+++|.....+++|........   .-+...+.+.+..-.... ......+.+++...... ++.......++++++
T Consensus         9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~   87 (132)
T 1qpz_A            9 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCGGD   87 (132)
T ss_dssp             HHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESSH
T ss_pred             HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHE-EEECCCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             9999975998599982885553178999889999998599998221-895434266799999999817999808997770


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             42199999999862---9-98799964
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      ......+...++..   | ++.++.+-
T Consensus        88 ~~a~g~~~~l~~~g~~ip~di~i~~fd  114 (132)
T 1qpz_A           88 IMAMGALCAADEMGLRVPQDVSLIGYD  114 (132)
T ss_dssp             HHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             HHHHHCCHHHHHCCCCCCCCEEEEEEC
T ss_conf             998740226987399789875999878


No 86 
>>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A* (A:424-550)
Probab=39.90  E-value=24  Score=15.44  Aligned_cols=85  Identities=15%  Similarity=0.100  Sum_probs=50.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCC-----CCCHHHHHHH
Q ss_conf             56878999469857999999999968998245158765467899999876515886133220466-----6660256999
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYK-----ALNTEGNAQE  109 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~-----s~~T~ena~~  109 (207)
                      -++++|||++-.-.   .+..+.+.-+..+|+.-.     ......+......|+..  +.++..     ..++.+...+
T Consensus        19 l~akaIvv~T~tG~---ta~~iS~~RP~~pIia~t-----~~~~~~r~l~l~~GV~p--~~~~~~~~~~~~~~~~~~i~~   88 (127)
T 3gr4_A           19 CCSGAIIVLTKSGR---SAHQVARYRPRAPIIAVT-----RNPQTARQAHLYRGIFP--VLCKDPVQEAWAEDVDLRVNF   88 (127)
T ss_dssp             TTCSCEEEECSSSH---HHHHHHTTCCSSCEEEEE-----SCHHHHHHGGGSTTEEE--EECCSCCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHHHCCCEE--EEECCCCCCCCCCCHHHHHHH
T ss_conf             79998999889769---999999659599889986-----98899988772079189--995675421111079999999


Q ss_pred             HHHHHHHCCC---CEEEEECCHH
Q ss_conf             9999986499---8189851144
Q gi|254780579|r  110 ASAWAEKNNF---HHVLIVTHDY  129 (207)
Q Consensus       110 ~~~~l~~~~~---~~iiLVTs~y  129 (207)
                      ..++++++|+   ...++|++..
T Consensus        89 ~~~~l~~~g~~~~GD~vVvv~g~  111 (127)
T 3gr4_A           89 AMNVGKARGFFKKGDVVIVLTGW  111 (127)
T ss_dssp             HHHHHHHTTSCCTTCEEEEEEES
T ss_pred             HHHHHHHCCCCCCCCEEEEEECC
T ss_conf             99999986999996989998078


No 87 
>>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} (A:)
Probab=39.82  E-value=24  Score=15.43  Aligned_cols=111  Identities=11%  Similarity=-0.084  Sum_probs=52.7

Q ss_pred             CCCCEEEEECCCHH-HHHH--HHHHHHHCCCCCEE-----CCCCCCC--------CCHHHHHHHHHHHCCCCHHHEECCC
Q ss_conf             56878999469857-9999--99999968998245-----1587654--------6789999987651588613322046
Q gi|254780579|r   35 PSVSAIVVLTGEPI-RIER--AFELLENQIGEKIF-----ISGVHHS--------VSKDILLQKIPIRQDLAECCIDIGY   98 (207)
Q Consensus        35 ~~~DaIVVLgGg~~-Ri~~--a~~L~~~g~~~~ii-----~SG~~~~--------~~~~~~~~~~~~~~~i~~~~I~~e~   98 (207)
                      .+++-|.+.|-|.. .+..  +..|.+-|.....+     .+|....        ............ ..-+++.++.-.
T Consensus        40 ~~~~rI~~~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dlvI~~S  118 (188)
T 1tk9_A           40 KKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEA-LGNEKDVLIGIS  118 (188)
T ss_dssp             HTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHH-HCCTTCEEEEEC
T ss_pred             HCCCEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCEEEEEE
T ss_conf             8599899991688743443314340687655544332225678744332122557999999999998-379999899981


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             666602569999999986499818985114421999999998629987999641676
Q gi|254780579|r   99 KALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus        99 ~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                      .+..| .+...+.++++++|. .++.+|+.-+.+=+    +.+  |+ ++.+|+.++
T Consensus       119 ~sG~t-~~~~~~~~~ak~~g~-~vI~IT~~~~s~l~----~~a--d~-~i~~~~~~e  166 (188)
T 1tk9_A          119 TSGKS-PNVLEALKKAKELNX-LCLGLSGKGGGXXN----KLC--DH-NLVVPSDDT  166 (188)
T ss_dssp             SSSCC-HHHHHHHHHHHHTTC-EEEEEEEGGGTTHH----HHC--SE-EEEESCSCH
T ss_pred             CCCCC-CCHHHHHHHHHHEEE-EEEEECCCCCHHHH----HHC--CE-EEEECCCCC
T ss_conf             89888-315765677774241-48998378852679----859--99-999799995


No 88 
>>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:117-249)
Probab=39.78  E-value=24  Score=15.42  Aligned_cols=100  Identities=9%  Similarity=0.005  Sum_probs=63.8

Q ss_pred             HHHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             99999996899824515876546----78999998765158861332204666660256999999998649981898511
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH  127 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs  127 (207)
                      .+-.|+++|+....+++|.....    ....-.++.+.+.++............+..........++...+....+++++
T Consensus         8 a~~~L~~~G~r~i~~i~~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   87 (133)
T 2fep_A            8 AVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSAT   87 (133)
T ss_dssp             HHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEESS
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf             99999862994367860576655310001368899999718998710588446434320667899983699996799778


Q ss_pred             HHHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             442199999999862---9-98799964
Q gi|254780579|r  128 DYHMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       128 ~yHm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      +.-...++..+++..   | ++.++.+-
T Consensus        88 d~~a~~~~~~l~~~~~~vP~di~iigfd  115 (133)
T 2fep_A           88 DEMALGIIHAAQDQGLSIPEDLDIIGFD  115 (133)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf             9999999999998499988415897417


No 89 
>>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} (A:)
Probab=38.73  E-value=25  Score=15.32  Aligned_cols=56  Identities=5%  Similarity=0.025  Sum_probs=35.6

Q ss_pred             CCCCCHHHHHHHHHHHCCCCHHH--------EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             65467899999876515886133--------22046666602569999999986499818985114
Q gi|254780579|r   71 HHSVSKDILLQKIPIRQDLAECC--------IDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~i~~~~--------I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      ......++.+..-+...|++...        +.+  ..-+|.++|...++-+++.+++..++++++
T Consensus        17 f~~~~~A~~~~~~L~~~g~~~~i~~~~~~yrV~i--Gp~~~~~~A~~~~~~lk~~~~~~~~i~~~~   80 (81)
T 1uta_A           17 FRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVI--GPVKGKENADSTLNRLKMAGHTNCIRLAAG   80 (81)
T ss_dssp             ESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEE--SSCBTTTHHHHHHHHHHHHCCSCCBCCCCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEE--CCCCCHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             6676668999999997799548950795999998--773999999999999998799877996379


No 90 
>>1a3w_A Pyruvate kinase; allosteric regulation, tranferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} (A:361-500)
Probab=38.65  E-value=25  Score=15.32  Aligned_cols=85  Identities=8%  Similarity=-0.009  Sum_probs=51.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE---CCCCCCCHHHHHHHHH
Q ss_conf             5687899946985799999999996899824515876546789999987651588613322---0466666025699999
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID---IGYKALNTEGNAQEAS  111 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~---~e~~s~~T~ena~~~~  111 (207)
                      -++++|||++-...   .|..+.+.-+..+|+.--     .....++......|+....+.   .++...++.+-...+.
T Consensus        33 l~a~aIvv~T~sG~---ta~~iSk~RP~~pI~a~t-----~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~  104 (140)
T 1a3w_A           33 QKAKAIIVLSTSGT---TPRLVSKYRPNCPIILVT-----RCPRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGI  104 (140)
T ss_dssp             HTCSCEEEECSSSH---HHHHHHHTCCSSCEEEEE-----SCTTHHHHGGGSTTEEEEECCSCCCSCTTTHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHEECCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             79988999879719---999999669799999987-----9889997521306749999546677750565999999999


Q ss_pred             HHHHHCCC----CEEEEECC
Q ss_conf             99986499----81898511
Q gi|254780579|r  112 AWAEKNNF----HHVLIVTH  127 (207)
Q Consensus       112 ~~l~~~~~----~~iiLVTs  127 (207)
                      ++++++|+    +.+++++.
T Consensus       105 ~~l~~~g~~~~gd~vv~~~g  124 (140)
T 1a3w_A          105 EKAKEFGILKKGDTYVSIQG  124 (140)
T ss_dssp             HHHHHTTCSCTTCEEEEEEC
T ss_pred             HHHHHCCCCCCCCEEEEEEC
T ss_conf             99997699999798999837


No 91 
>>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} (A:153-264)
Probab=38.44  E-value=25  Score=15.30  Aligned_cols=56  Identities=9%  Similarity=0.019  Sum_probs=40.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC--C--CCHHHHHHHHHHHCCC
Q ss_conf             456878999469857999999999968998245158765--4--6789999987651588
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH--S--VSKDILLQKIPIRQDL   89 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~--~--~~~~~~~~~~~~~~~i   89 (207)
                      .....-++|.|||.--++.|..|.++|..-.|+-.+...  .  ....+.+...+.+.|+
T Consensus        16 ~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~i~~~~~~~~~~~~~~~l~~~gV   75 (112)
T 1lvl_A           16 KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI   75 (112)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             HHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf             125995999998899999999999759979999837844431005665420010001214


No 92 
>>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.6A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A (A:)
Probab=37.98  E-value=26  Score=15.25  Aligned_cols=12  Identities=17%  Similarity=-0.000  Sum_probs=5.3

Q ss_pred             CCCHHHHHHHHH
Q ss_conf             666025699999
Q gi|254780579|r  100 ALNTEGNAQEAS  111 (207)
Q Consensus       100 s~~T~ena~~~~  111 (207)
                      .--|.+++.++.
T Consensus       117 ~~GTl~e~~~a~  128 (176)
T 2iz6_A          117 GPGTAAEVALAL  128 (176)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
T ss_conf             767099999999


No 93 
>>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} (A:1-104,A:282-327)
Probab=37.95  E-value=26  Score=15.25  Aligned_cols=31  Identities=13%  Similarity=0.018  Sum_probs=27.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             8999469857999999999968998245158
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      -|||+|||..=+..|.+|.+.|+...|+.-.
T Consensus         4 ~VvIIGaG~AGl~aA~~L~~~g~~v~I~e~~   34 (150)
T 1fcd_A            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIE   34 (150)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CEEEECCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             8999996199999999997009399689991


No 94 
>>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodanese, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* (A:1-148,A:284-356)
Probab=37.84  E-value=26  Score=15.24  Aligned_cols=36  Identities=19%  Similarity=0.037  Sum_probs=29.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC
Q ss_conf             568789994698579999999999689982451587
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGV   70 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~   70 (207)
                      ....-|||+|||.-=+..|..|.+.+....|++-.-
T Consensus        34 ~~~k~VVIVGgG~aG~~~A~~l~r~~~~~~I~li~~   69 (221)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIXVER   69 (221)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             899859998988999999999981798882899938


No 95 
>>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} (A:)
Probab=37.67  E-value=26  Score=15.22  Aligned_cols=62  Identities=10%  Similarity=0.006  Sum_probs=42.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-CCHHHHHHHHHHHCCCCHHHEE
Q ss_conf             4568789994698579999999999689982451587654-6789999987651588613322
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-VSKDILLQKIPIRQDLAECCID   95 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-~~~~~~~~~~~~~~~i~~~~I~   95 (207)
                      .+..+++|.|+||.+=...+.-+.+.+.....+..+.+.. ....+.++..+...|++-..|.
T Consensus        27 ~~~~kv~V~lSGG~DS~~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~   89 (249)
T 3fiu_A           27 YPAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQDALELIEMLNIEHYTIS   89 (249)
T ss_dssp             TTCSEEEEECCSSHHHHHHHHHHHHTTSCEEEEECCCTTSCHHHHHHHHHHHHHHTCEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             399839997779989999999999829863210025664047789999999862454431145


No 96 
>>3dme_A Conserved exported protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} (A:1-42,A:149-222,A:325-369)
Probab=37.14  E-value=26  Score=15.17  Aligned_cols=51  Identities=10%  Similarity=-0.028  Sum_probs=35.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH---HHHHHHHCCC
Q ss_conf             89994698579999999999689982451587654678999---9987651588
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDIL---LQKIPIRQDL   89 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~---~~~~~~~~~i   89 (207)
                      -+||.|||.-=+..|.+|.+.|....++=.+........++   ..+.+.+.|+
T Consensus         6 ~~~viG~g~~g~~~a~~~~~~g~~v~~~e~~~~~~~~D~ei~~~l~~~l~~~GI   59 (161)
T 3dme_A            6 DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGSHALMLAYQGDAESDGA   59 (161)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEHHHHHHHHHHHHHCHH
T ss_conf             599999209999999999978995899978999866230111222100000001


No 97 
>>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} (A:1-146,A:319-398)
Probab=36.58  E-value=27  Score=15.12  Aligned_cols=68  Identities=13%  Similarity=-0.029  Sum_probs=32.6

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             22046666602569999999986499818985114421999999998629987999641676667542116989999999
Q gi|254780579|r   94 IDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLL  173 (207)
Q Consensus        94 I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~  173 (207)
                      |++|+--..|.+++.+..+..+++|.  .+-|+..|-.-|                .|...    ++.|   .+.|.+++
T Consensus       112 VicEKPla~s~~ea~eL~~~a~~~g~--~~~v~~~~R~~~----------------~p~gH----~eg~---~~af~n~y  166 (226)
T 3dty_A          112 VVCEKPLCFTVEQAENLRELSHKHNR--IVGVTYGYADDR----------------IGGGH----PEGL---FEAWANLY  166 (226)
T ss_dssp             EEECSCSCSCHHHHHHHHHHHHHTTC--CEEECCGGGTCC----------------SCTTS----CCCH---HHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHHHHCCCC--EEEEEEECCCCC----------------CCCCC----CCCH---HHHHHHHH
T ss_conf             67437732557788999998742697--699974210210----------------37888----6406---78899999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999987
Q gi|254780579|r  174 IEYLKILLLSIQL  186 (207)
Q Consensus       174 ~Ey~K~l~~~lr~  186 (207)
                      .+...-+..+.++
T Consensus       167 ~~~~~~i~~~~~~  179 (226)
T 3dty_A          167 YRFALAXDATDRS  179 (226)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999844516


No 98 
>>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* (A:1-43,A:164-239,A:321-474)
Probab=36.51  E-value=27  Score=15.11  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=38.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHH---CCCCCEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             687899946985799999999996---8998245158765467899999876515886
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLEN---QIGEKIFISGVHHSVSKDILLQKIPIRQDLA   90 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~---g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~   90 (207)
                      +..-|||-|||.-=++.|..|.+.   +..-.++-.+......-++.+++.+.+.|+.
T Consensus         4 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~le~~GV~   61 (273)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPAHLVADFLKRWAVERGVN   61 (273)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCHHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             8656999898799999999999860899979999689999998756755221003455


No 99 
>>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} (A:123-237)
Probab=36.50  E-value=27  Score=15.11  Aligned_cols=56  Identities=9%  Similarity=0.105  Sum_probs=41.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC----CCCHHHHHHHHHHHCCCC
Q ss_conf             56878999469857999999999968998245158765----467899999876515886
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH----SVSKDILLQKIPIRQDLA   90 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~----~~~~~~~~~~~~~~~~i~   90 (207)
                      ....-|+|.|||.-=++.|..|.+.|..-.++..+...    ...-.+.+.+.+.+.|+.
T Consensus        24 ~~~~~i~IiGgG~~g~e~A~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~l~~~gI~   83 (115)
T 1yqz_A           24 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIP   83 (115)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEEEEECCCCCCCEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             455505786311000122211000323210011000223320134555554211234069


No 100
>>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} (A:)
Probab=36.40  E-value=27  Score=15.10  Aligned_cols=101  Identities=8%  Similarity=-0.001  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             79999999999689982451587654678999998765158861332204666660256999999998649981898511
Q gi|254780579|r   48 IRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH  127 (207)
Q Consensus        48 ~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs  127 (207)
                      .++..-++.+++...+.+...-..+..........+..........+.+.+...|.+.+... .++++++++++++++=-
T Consensus        31 ~~i~~l~~~ar~~~~pv~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~v~~k~~~s~f~~t~L-~~~L~~~~i~~iii~G~  109 (167)
T 2a67_A           31 DKVNQRIAVYRQHHAPIIFVQHEETELPFGSDSWQLFEKLDTQPTDFFIRKTHANAFYQTNL-NDLLTEQAVQTLEIAGV  109 (167)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECBTTBCTTSTTTSBCTTSCCCTTSEEEEESSSSTTTTSSH-HHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCH-HHHHHHCCCCEEEEECC
T ss_conf             99999999999849973887326666788886543373127999858997053245667748-99998579728999275


Q ss_pred             HHHHHH--HHHHHHHHCCCCEEEEEE
Q ss_conf             442199--999999862998799964
Q gi|254780579|r  128 DYHMPR--TFLELQRINSTVQFIPYP  151 (207)
Q Consensus       128 ~yHm~R--A~~~f~~~~p~i~i~~~p  151 (207)
                      ..|.==  .-+.....  |.+++...
T Consensus       110 ~t~~CV~~Ta~~a~~~--G~~v~vi~  133 (167)
T 2a67_A          110 QTEFCVDTTIRXAHGL--GYTCLXTP  133 (167)
T ss_dssp             CTTTHHHHHHHHHHHH--TCEEEECT
T ss_pred             CCCHHHHHHHHHHHHC--CCEEEEEC
T ss_conf             2148999999999988--99899953


No 101
>>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} (A:128-256)
Probab=36.38  E-value=27  Score=15.10  Aligned_cols=95  Identities=9%  Similarity=0.067  Sum_probs=60.4

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             99999968998245158765467---899999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|.++|+.+..+++|..+...   ....+++.+.+.+++.......   .+..+.......++........++++++.
T Consensus         9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~aii~~~d~   85 (129)
T 3huu_A            9 TQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIK---SMNDLRDFIKQYCIDASHMPSVIITSDVM   85 (129)
T ss_dssp             HHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEEC---SHHHHHHHC--------CCCSEEEESSHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE---CCCHHHHHHHHHHHHCCCCCCEEECCCHH
T ss_conf             999987098765556799766079999999999999859996506751---34215668999999579998633138889


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             2199999999862---9-9879996
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      =..+.+..+++..   | ++.++.+
T Consensus        86 ~a~~~~~~l~~~~~~ip~di~ivgf  110 (129)
T 3huu_A           86 LNMQLLNVLYEYQLRIPEDIQTATF  110 (129)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             9999999999759987860699833


No 102
>>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:1-139,A:277-286)
Probab=36.03  E-value=27  Score=15.06  Aligned_cols=37  Identities=22%  Similarity=0.082  Sum_probs=26.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC
Q ss_conf             54568789994698579999999999689982451587
Q gi|254780579|r   33 DHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGV   70 (207)
Q Consensus        33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~   70 (207)
                      ....+|.|||+|| -+-+..|+.++.....|.+-+.-|
T Consensus        72 ~~~~~Dlvi~lGG-DGT~L~a~~~~~~~~~PilgIn~G  108 (149)
T 1u0t_A           72 AADGCELVLVLGG-DGTFLRAAELARNASIPVLGVNLG  108 (149)
T ss_dssp             ----CCCEEEEEC-HHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             4456558999758-778999999750358837985788


No 103
>>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} (A:1-133,A:305-362)
Probab=35.96  E-value=28  Score=15.06  Aligned_cols=79  Identities=10%  Similarity=-0.019  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--HHHHHCCCCEEEEEEC
Q ss_conf             78999998765158861332204666660256999999998649981898511442199999--9998629987999641
Q gi|254780579|r   75 SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFL--ELQRINSTVQFIPYPI  152 (207)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~--~f~~~~p~i~i~~~pv  152 (207)
                      ...+++.. +.+.|.   .+++|.-...|.+++....+..+++|. .+.+-+...|-.-|+|  +|.+...++       
T Consensus        83 ~H~~~a~~-al~~Gk---hVl~EKPla~s~~e~~eL~~~a~~~gv-~~~v~~~~r~~~~~~~~~~~~~~~~~~-------  150 (191)
T 1ydw_A           83 LHVEWAIK-AAEKGK---HILLEKPVAXNVTEFDKIVDACEANGV-QIXDGTXWVHPQEACXVREFARLVGEI-------  150 (191)
T ss_dssp             GHHHHHHH-HHTTTC---EEEECSSCSSSHHHHHHHHHHHHTTTC-CEEECCCGGGCHHHHHHHHHTTCC----------
T ss_pred             CCCCCCCC-CCCCCH---HEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHH-------
T ss_conf             44432222-344330---000033421003677889987631343-321112232017799999999999988-------


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             6766675421169
Q gi|254780579|r  153 ISHDLEENSSIFK  165 (207)
Q Consensus       153 ~~~~~~~~~Ww~~  165 (207)
                      ....-++++-|..
T Consensus       151 ~~~~~~~~~~~~~  163 (191)
T 1ydw_A          151 KNNGAKPDGYWPS  163 (191)
T ss_dssp             ---------CHHH
T ss_pred             HHCCCCCCCCCHH
T ss_conf             7279888888999


No 104
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:122-251)
Probab=35.92  E-value=28  Score=15.05  Aligned_cols=96  Identities=11%  Similarity=0.068  Sum_probs=59.8

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             999999689982451587654678---99999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|+++|.....+++|.......   ..-.+..+.+.+.....+..  ...+..+.......+.....-...++++++.
T Consensus         9 ~~~L~~~G~~~i~~i~~~~~~~~~~~r~~gf~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (130)
T 2iks_A            9 AEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYA--NSYEREAAAQLFEKWLETHPXPQALFTTSFA   86 (130)
T ss_dssp             HHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEE--SSSCHHHHHHHHHHHTTTSCCCSEEEESSHH
T ss_pred             CCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             10122202333222345555443100125555555522343221223--3213677778887777632685044310157


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf             2199999999862---9-9879996
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~  150 (207)
                      .+..+...++...   | ++.++.+
T Consensus        87 ~a~~~~~~~~~~~~~vP~di~vigf  111 (130)
T 2iks_A           87 LLQGVXDVTLRRDGKLPSDLAIATF  111 (130)
T ss_dssp             HHHHHHHHHHHHHSSCCSSCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             7766666654100257751578721


No 105
>>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum str} (A:17-160)
Probab=35.86  E-value=28  Score=15.05  Aligned_cols=37  Identities=11%  Similarity=0.016  Sum_probs=20.0

Q ss_pred             HEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf             322046666602569999999986499818985114421
Q gi|254780579|r   93 CIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM  131 (207)
Q Consensus        93 ~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm  131 (207)
                      .++.-..+..| .+.....+.++++|.+ ++.+|++.-+
T Consensus        66 vvI~iS~sg~~-~~~~~~~~~ak~~g~~-ii~iT~~s~l  102 (144)
T 1tzb_A           66 LLIAVSYSGNT-IETLYTVEYAKRRRIP-AVAITTGGRL  102 (144)
T ss_dssp             EEEEECSSSCC-HHHHHHHHHHHHTTCC-EEEEESSTTG
T ss_pred             EEEEECCCCCC-HHHHHHHHHHHHCCCE-EECCCCCCHH
T ss_conf             89998489587-8899999999751870-4206899859


No 106
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231)
Probab=35.57  E-value=28  Score=15.02  Aligned_cols=94  Identities=9%  Similarity=0.016  Sum_probs=59.8

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCH
Q ss_conf             999999689982451587654678---999998765158861332204666660256999999998-6499818985114
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAE-KNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~-~~~~~~iiLVTs~  128 (207)
                      +-.|.++|..+..+++|.......   ..-.+..+.+.+++...+..   ..++.+........+. .......++++++
T Consensus         9 ~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~aii~~~d   85 (130)
T 3cs3_A            9 IEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQG---DFTEPSGYAAAKKILSQPQTEPVDVFAFND   85 (130)
T ss_dssp             HHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---CSSHHHHHHHHHHHTTSCCCSSEEEEESSH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHCCCCCCEEEEECHH
T ss_conf             32101222345433457866623343226899999984997413412---452677888777764136898627875224


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEE
Q ss_conf             42199999999862---9-987999
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIP  149 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~  149 (207)
                      ...-..+..+++..   | ++.++.
T Consensus        86 ~~a~~~l~~l~~~g~~vP~di~vv~  110 (130)
T 3cs3_A           86 EMAIGVYKYVAETNYQMGKDIRIIG  110 (130)
T ss_dssp             HHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred             HHCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             5404530024233445784120345


No 107
>>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* (A:137-268)
Probab=35.06  E-value=28  Score=14.97  Aligned_cols=106  Identities=8%  Similarity=-0.114  Sum_probs=57.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH
Q ss_conf             45687899946985799999999996899824515876546789999987651588613322046666602569999999
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW  113 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~  113 (207)
                      .++.|.++|.||+..=-..++++.+..-...+.+++..+       ..+.+.+.|...   .+..+..   +.....++.
T Consensus         2 v~~G~~Vli~ga~g~vG~~~iqlak~~g~~vi~~~~~~~-------~~~~~~~~ga~~---~i~~~~~---~~~~~i~~~   68 (132)
T 3jyn_A            2 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE-------KAAHAKALGAWE---TIDYSHE---DVAKRVLEL   68 (132)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH-------HHHHHHHHTCSE---EEETTTS---CHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHH-------HHHHHHHCCCCE---EEECCCC---CHHHHHHHH
T ss_conf             799899999899509999999999986998999938778-------899999759989---9979998---899999997


Q ss_pred             HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             986499818985114421999999998629987999641676
Q gi|254780579|r  114 AEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus       114 l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                      ....+.+-++-.+..-++..+....++   +=.++.+...+.
T Consensus        69 ~~~~~~d~v~d~~g~~~~~~~~~~l~~---~G~i~~~g~~~~  107 (132)
T 3jyn_A           69 TDGKKCPVVYDGVGQDTWLTSLDSVAP---RGLVVSFGNASG  107 (132)
T ss_dssp             TTTCCEEEEEESSCGGGHHHHHTTEEE---EEEEEECCCTTC
T ss_pred             HCCCCCCEEEECCCHHHHHHHHHHHCC---CCEEEEECCCCC
T ss_conf             189995389989788999999998738---978999836678


No 108
>>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} (A:1-163)
Probab=35.02  E-value=28  Score=14.96  Aligned_cols=109  Identities=10%  Similarity=0.040  Sum_probs=68.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99946985799999999996899824515876546789999987651588613322046666602569999999986499
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF  119 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~  119 (207)
                      -++.|-|.  +.+-.+..++...+.++++|.+-.....+.....+...++.  .+..+.....|.+++....+.+++.+.
T Consensus        12 ~i~~G~g~--~~~l~~~l~~~g~r~livtd~~~~~~~~~~v~~~l~~~~~~--~~~~~~~~~~t~~~v~~~~~~~~~~~~   87 (163)
T 1jq5_A           12 KYVQGKNV--ITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIA--AEEVVFSGEASRNEVERIANIARKAEA   87 (163)
T ss_dssp             EEEEETTG--GGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCE--EEEEECCSSCBHHHHHHHHHHHHHTTC
T ss_pred             EEEECCCH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             08986499--99999999976993899989757899999999999877996--999984999999999999999874299


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             81898511442199999999862998799964167
Q gi|254780579|r  120 HHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIIS  154 (207)
Q Consensus       120 ~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~  154 (207)
                      ..++-|=..-=+=-|+..--..  +..++..|+..
T Consensus        88 d~iiaiGGGs~~D~aK~~~~~~--~~p~i~iPTt~  120 (163)
T 1jq5_A           88 AIVIGVGGGKTLDTAKAVADEL--DAYIVIVPTAA  120 (163)
T ss_dssp             SEEEEEESHHHHHHHHHHHHHH--TCEEEEEESSC
T ss_pred             CEEEEECCCCCCCCHHHHHHCC--CCCEEEEECCC
T ss_conf             8899846860100201100204--79789970655


No 109
>>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} (A:1-104)
Probab=34.53  E-value=29  Score=14.91  Aligned_cols=43  Identities=12%  Similarity=0.030  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECC---HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             256999999998649981898511---4421999999998629987999
Q gi|254780579|r  104 EGNAQEASAWAEKNNFHHVLIVTH---DYHMPRTFLELQRINSTVQFIP  149 (207)
Q Consensus       104 ~ena~~~~~~l~~~~~~~iiLVTs---~yHm~RA~~~f~~~~p~i~i~~  149 (207)
                      .+......++++++++. ++++++   ...+....-.|++.  |+.++|
T Consensus        58 ~~~~~~l~~i~~~~~iD-~vip~~~~E~~~~a~~~~~~~~~--Gi~v~~  103 (104)
T 2pn1_A           58 VEYIDHLLTLCQDEGVT-ALLTLIDPELGLLAQATERFQAI--GVTVIV  103 (104)
T ss_dssp             TTHHHHHHHHHHHHTCC-EEEESSHHHHHHHHHTHHHHHTT--TCEECC
T ss_pred             HHHHHHHHHHHHHHCCC-EEEECCCCHHHHHHHHHHHHHHC--CCEEEC
T ss_conf             77999999999985999-89404640026799986678765--980866


No 110
>>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} (A:194-372)
Probab=33.90  E-value=24  Score=15.44  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=28.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             698579999999999689982451587654678999998765158861
Q gi|254780579|r   44 TGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE   91 (207)
Q Consensus        44 gGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~   91 (207)
                      ..+.+.++.++++.++...|.|++.++.......+...++....|+|-
T Consensus         4 ~p~~~~i~~~~~~L~~A~rPvIi~G~~~~~~~a~~~l~~lae~~giPv   51 (179)
T 2c31_A            4 IPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPF   51 (179)
T ss_dssp             CCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999986168958999623113447899988787418651


No 111
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241)
Probab=33.88  E-value=30  Score=14.85  Aligned_cols=98  Identities=11%  Similarity=-0.070  Sum_probs=62.0

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCH
Q ss_conf             999999689982451587654678---9999987651588613322046666602569999999-986499818985114
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAW-AEKNNFHHVLIVTHD  128 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~-l~~~~~~~iiLVTs~  128 (207)
                      +-.|+++|.....+++|.......   ..-+...+.+.+..-.... ......+.+++...... ++.......++++++
T Consensus         9 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~   87 (132)
T 1dbq_A            9 GRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCGGD   87 (132)
T ss_dssp             HHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCH
T ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf             9999865996699963763124789999766789998089977200-235767777789999999845999845885578


Q ss_pred             HHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             42199999999862---9-98799964
Q gi|254780579|r  129 YHMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       129 yHm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      ......+...++..   | ++.++.+-
T Consensus        88 ~~a~g~~~~l~~~g~~ip~di~i~~fd  114 (132)
T 1dbq_A           88 IMAMGALCAADEMGLRVPQDVSLIGYD  114 (132)
T ss_dssp             HHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             999999999998699999756999606


No 112
>>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} (P:117-237)
Probab=33.01  E-value=31  Score=14.76  Aligned_cols=55  Identities=11%  Similarity=0.055  Sum_probs=40.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC-----CCCHHHHHHHHHHHCCC
Q ss_conf             56878999469857999999999968998245158765-----46789999987651588
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH-----SVSKDILLQKIPIRQDL   89 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~-----~~~~~~~~~~~~~~~~i   89 (207)
                      +...-++|+|||.-=++.|..|.+.|....++..+...     .......+.+.+.+.|+
T Consensus        24 ~~~~~v~ViGgG~~G~E~A~~l~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~~gv   83 (121)
T 3fg2_P           24 PDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGI   83 (121)
T ss_dssp             GGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTC
T ss_pred             HCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             025631898032211115653203220477402367432112014556655555541684


No 113
>>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B (A:94-368)
Probab=32.88  E-value=31  Score=14.75  Aligned_cols=97  Identities=8%  Similarity=-0.025  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCC-------HHHHHHHHHHHHHHCC
Q ss_conf             857999999999968998245158765467899999876515886133220466666-------0256999999998649
Q gi|254780579|r   46 EPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALN-------TEGNAQEASAWAEKNN  118 (207)
Q Consensus        46 g~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~-------T~ena~~~~~~l~~~~  118 (207)
                      |..-+...+...++..+..+++.|.++...|.....+.....+..+..+++-..+..       .-.-+...++++.++|
T Consensus        81 GKT~Ll~~ia~~~~~~~~~iv~~~iGer~~ev~e~~~~~~~~~~~~~t~iv~~t~d~~~~~r~~~~~~a~~~AEy~~~~G  160 (275)
T 2qe7_A           81 GKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKG  160 (275)
T ss_dssp             CHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             77689999999763256633999625523429999998755287020466301789999999999988643655556459


Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             981898511442199999999862
Q gi|254780579|r  119 FHHVLIVTHDYHMPRTFLELQRIN  142 (207)
Q Consensus       119 ~~~iiLVTs~yHm~RA~~~f~~~~  142 (207)
                      -+-+++..|-...-||..+.....
T Consensus       161 ~~Vlll~Ds~Tr~a~A~rei~~~~  184 (275)
T 2qe7_A          161 KHALVVYDDLSKQAAAYRELSLLL  184 (275)
T ss_dssp             CEEEEEEECHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             948999527078888999999873


No 114
>>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:157-289)
Probab=32.77  E-value=31  Score=14.74  Aligned_cols=97  Identities=8%  Similarity=-0.095  Sum_probs=56.8

Q ss_pred             HHH-HHHH--CCCCCEECCCCCCCCCHH--HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             999-9996--899824515876546789--99998765158861332204666660256999999998649981898511
Q gi|254780579|r   53 AFE-LLEN--QIGEKIFISGVHHSVSKD--ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH  127 (207)
Q Consensus        53 a~~-L~~~--g~~~~ii~SG~~~~~~~~--~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs  127 (207)
                      +.+ |.++  |.....+++|.....+..  +-.+..+.+.+.... +.......+..+......+++.++..-..+++.+
T Consensus         8 a~~~L~~~~~g~~~i~~i~g~~~~~~~~R~~Gf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~   86 (133)
T 1jx6_A            8 LATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFEL-QSAYYTKATKQSGYDAAKASLAKHPDVDFIYACS   86 (133)
T ss_dssp             HHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEE-EEEECCCSSHHHHHHHHHHHHHHCCCCSEEEESS
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             999999846997479981599985699999999999986327885-1598379999999999999754256662357437


Q ss_pred             HHHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf             4421999999998629-9879996
Q gi|254780579|r  128 DYHMPRTFLELQRINS-TVQFIPY  150 (207)
Q Consensus       128 ~yHm~RA~~~f~~~~p-~i~i~~~  150 (207)
                      +....-+...++...| ++.++.+
T Consensus        87 d~~a~g~~~al~~~g~~~i~ivg~  110 (133)
T 1jx6_A           87 TDVALGAVDALAELGREDIMINGW  110 (133)
T ss_dssp             HHHHHHHHHHHHHHTCTTSEEBCS
T ss_pred             CHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             599999999998748988289816


No 115
>>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle structural genomics center for infectious disease; 1.80A {Brucella abortus} (A:)
Probab=32.68  E-value=31  Score=14.73  Aligned_cols=69  Identities=17%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHH--HCCCCHHHEECCCCCCCHHH
Q ss_conf             68789994698579999999999689982451587654678999998765--15886133220466666025
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPI--RQDLAECCIDIGYKALNTEG  105 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~--~~~i~~~~I~~e~~s~~T~e  105 (207)
                      ..++|+|.|-.+-=+.+-++|.++|...+-++-|..-++-.+.-.|+.+.  +.++|.. .....+.-|+.-
T Consensus       130 ~~~~IvvIGNAPTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESK~~L~~~~~~iP~I-t~~G~kGGS~vA  200 (212)
T 3e7d_A          130 IEGSIVAIGNAPTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYV-IVRGRRGGSAMT  200 (212)
T ss_dssp             CTTCEEEESSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEE-EECSSCCCHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCEE-EEECCCCCHHHH
T ss_conf             79988996787599999999874379987179975876547499999998376999989-983598639999


No 116
>>2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:334-428)
Probab=32.67  E-value=31  Score=14.73  Aligned_cols=30  Identities=7%  Similarity=-0.233  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf             025699999999864998189851144219
Q gi|254780579|r  103 TEGNAQEASAWAEKNNFHHVLIVTHDYHMP  132 (207)
Q Consensus       103 T~ena~~~~~~l~~~~~~~iiLVTs~yHm~  132 (207)
                      +-+......+.+++++...-+-|+.+||.+
T Consensus        49 ~~~~l~~~~~~l~~~~~~~~L~v~~afHs~   78 (95)
T 2pff_B           49 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSE   78 (95)
T ss_dssp             SHHHHHHHHHHHHTTSCCSCCCTTSCCTTT
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             989999999998604799998966598865


No 117
>>1dxl_A Dihydrolipoamide dehydrogenase; multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex, flavoprotein; HET: FAD; 3.15A {Pisum sativum} (A:158-275)
Probab=32.66  E-value=31  Score=14.73  Aligned_cols=57  Identities=11%  Similarity=-0.035  Sum_probs=41.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC--C--CCHHHHHHHHHHHCCCC
Q ss_conf             456878999469857999999999968998245158765--4--67899999876515886
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH--S--VSKDILLQKIPIRQDLA   90 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~--~--~~~~~~~~~~~~~~~i~   90 (207)
                      .....-++|+|||.-=++.|..|.+.|..-.++..+...  .  ..-.+.+...+.+.|+.
T Consensus        17 ~~~~~~v~IiGgG~ig~e~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gI~   77 (118)
T 1dxl_A           17 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK   77 (118)
T ss_dssp             SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             1079839999968999999999997099799998468568655989999999999971972


No 118
>>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* (A:1-82,A:184-260,A:393-424)
Probab=31.79  E-value=32  Score=14.64  Aligned_cols=33  Identities=9%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             5687899946985799999999996899824515
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      ...| |+|.|||..=+..|..|.++|....+++-
T Consensus         5 ~k~D-VIIIGAGiAGLSAA~~LAk~G~ksVlILE   37 (191)
T 2b9w_A            5 KDSR-IAIIGAGPAGLAAGMYLEQAGFHDYTILE   37 (191)
T ss_dssp             TTCC-EEEECCSHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCC-EEEECCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9998-99989848999999999856999889995


No 119
>>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, FAD, NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* (A:1-109,A:245-307)
Probab=31.64  E-value=32  Score=14.62  Aligned_cols=31  Identities=13%  Similarity=0.074  Sum_probs=25.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCE-ECCC
Q ss_conf             899946985799999999996899824-5158
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKI-FISG   69 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~i-i~SG   69 (207)
                      -+||+|||.-=+..|.+|.+.+....| +++-
T Consensus         6 ~VVIIGgG~aG~~~A~~l~r~g~~~~I~vi~~   37 (172)
T 2v3a_A            6 PLVIIGTGLAGYNLAREWRKLDGETPLLMITA   37 (172)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTCSSSCEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             99999788999999999981697986899959


No 120
>>3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} (G:)
Probab=31.63  E-value=32  Score=14.62  Aligned_cols=130  Identities=5%  Similarity=-0.043  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHH------EECCCCCCC--HHH-HHHHHH----
Q ss_conf             9857999999999968998245158765467899999876515886133------220466666--025-699999----
Q gi|254780579|r   45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC------IDIGYKALN--TEG-NAQEAS----  111 (207)
Q Consensus        45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~------I~~e~~s~~--T~e-na~~~~----  111 (207)
                      ...+.+++++++.++.+.|.|++.++.......+...++.+..|+|--.      +.-++.+..  ++- .+-...    
T Consensus        19 ~~~~~i~~~~~~L~~AkrPvii~G~~~~~~~~~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~g~~~g~~g~~G~~~~   98 (170)
T 3cf4_G           19 SKAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPK   98 (170)
T ss_dssp             CEECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTT
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCCCCHHCCCCCCCCCCCCCHHH
T ss_conf             45369999999999669988996888643268999999999849788987222676776682111645222465221027


Q ss_pred             ----HHHHHCCCCEEEEE-CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             ----99986499818985-114421999999998629987999641676667542116989999999999
Q gi|254780579|r  112 ----AWAEKNNFHHVLIV-THDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEY  176 (207)
Q Consensus       112 ----~~l~~~~~~~iiLV-Ts~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey  176 (207)
                          +.++  +..=++++ +.-.-+.-....+...-.-+.|...|.....+..+--..........+.+.
T Consensus        99 ~~~~~~~~--~aDlii~iG~~~~~~~t~~~~~~~~~~~i~Id~d~~~~~~~~~~~~~~~da~~~~~L~~L  166 (170)
T 3cf4_G           99 WPGLDGNG--NYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIERGYIQNATMSFGNLSKADHYAALDEL  166 (170)
T ss_dssp             CCCSSSSC--CCSEEEEESCCHHHHHHHHHHHHHHCCCCEEECSSSCCTTSSEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             88885334--678899957700421412023346677079982801314765255855589999999999


No 121
>>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiamine diphosphate; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* (A:192-368)
Probab=31.33  E-value=24  Score=15.46  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             98579999999999689982451587654678999998765158861
Q gi|254780579|r   45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE   91 (207)
Q Consensus        45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~   91 (207)
                      ...+.++.++++.++...|.|++.++.......+..+.+....|+|-
T Consensus         5 p~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv   51 (177)
T 2q28_A            5 PCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPF   51 (177)
T ss_dssp             ECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             99999999998765336987999535333257999999975325875


No 122
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:158-285)
Probab=30.92  E-value=33  Score=14.55  Aligned_cols=95  Identities=13%  Similarity=0.001  Sum_probs=65.0

Q ss_pred             HHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             999999689982451587654678---99999876515886133220466666025699999999864998189851144
Q gi|254780579|r   53 AFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        53 a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      +-.|+++|+....+++|.......   ..-.+..+.+.+++..    .....+..+......+++.+.+....+++.++.
T Consensus         9 ~~~L~~~G~~~ia~i~~~~~~~~~~~R~~g~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~   84 (128)
T 3jvd_A            9 TESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVT----FHFGHYSVESGEEMAQVVFNNGLPDALIVASPR   84 (128)
T ss_dssp             HHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE----EEECCSSHHHHHHHHHHHHHTCCCSEEEECCHH
T ss_pred             HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----CEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             0012345531687504653211245544667778986086422----200254224577888988750431155543466


Q ss_pred             HHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf             2199999999862---9-98799964
Q gi|254780579|r  130 HMPRTFLELQRIN---S-TVQFIPYP  151 (207)
Q Consensus       130 Hm~RA~~~f~~~~---p-~i~i~~~p  151 (207)
                      ..-.++..++...   | ++.++.+-
T Consensus        85 ~a~~~~~~l~~~g~~vP~di~iv~~d  110 (128)
T 3jvd_A           85 LMAGVMRAFTRLNVRVPHDVVIGGYD  110 (128)
T ss_dssp             HHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             66553578888750578977999989


No 123
>>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} (A:155-272)
Probab=30.89  E-value=33  Score=14.54  Aligned_cols=57  Identities=11%  Similarity=0.059  Sum_probs=41.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-----CCHHHHHHHHHHHCCCC
Q ss_conf             4568789994698579999999999689982451587654-----67899999876515886
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-----VSKDILLQKIPIRQDLA   90 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-----~~~~~~~~~~~~~~~i~   90 (207)
                      ....+-++|.|||.-=++.|..|.+.|..-.++..+....     ...+.+++....+.|+.
T Consensus        17 ~~~~k~v~ViGgG~ig~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~gV~   78 (118)
T 2qae_A           17 PRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMK   78 (118)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCE
T ss_pred             HHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf             22598799989888999999999960987999983230100000100101343210112221


No 124
>>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} (A:1-130,A:276-315)
Probab=30.81  E-value=33  Score=14.54  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=40.6

Q ss_pred             HHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC----HHHHHHHHHHHHHHC
Q ss_conf             8765158861332204666660256999999998649981898511----442199999999862
Q gi|254780579|r   82 KIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH----DYHMPRTFLELQRIN  142 (207)
Q Consensus        82 ~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs----~yHm~RA~~~f~~~~  142 (207)
                      ..+.+.|.   .|.+|+-...|.+++.+..+..+++|..  +.|..    ..-+.||...|..+.
T Consensus        87 ~~al~aGk---hVl~EKPla~~~ee~~eL~~~a~~~g~~--v~V~~~~R~~~~~~~~~~~~~~~~  146 (170)
T 3c1a_A           87 LAAIASGK---AVLVEKPLTLDLAEAEAVAAAAKATGVX--VWVEHTQLDEXPLTRAVRLFAGAV  146 (170)
T ss_dssp             HHHHHTTC---EEEEESSSCSCHHHHHHHHHHHHHHCCC--EEEECGGGCCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCC---HHHCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             00002331---1012545321112233201233203433--322332236569999999999999


No 125
>>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA; 2.30A {Thermus thermophilus HB8} (A:149-293)
Probab=30.47  E-value=34  Score=14.50  Aligned_cols=38  Identities=11%  Similarity=-0.006  Sum_probs=26.6

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             65456878999469857999999999968998245158
Q gi|254780579|r   32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      .+.++.|.++|.|||..=...++.|.+.+-...+.+..
T Consensus        14 ~~~~~g~~vlV~Gag~~~g~~~~~la~~~g~~vi~~~~   51 (145)
T 2eih_A           14 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG   51 (145)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES
T ss_pred             HCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             29899699999899649999999999987998999979


No 126
>>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} (A:135-248)
Probab=30.33  E-value=34  Score=14.49  Aligned_cols=51  Identities=10%  Similarity=-0.012  Sum_probs=35.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             87899946985799999999996899824515876546789999987651588
Q gi|254780579|r   37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDL   89 (207)
Q Consensus        37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i   89 (207)
                      ..-++|+|||..-++.|..|.+.+..-.++.-+.....++..  .....+.++
T Consensus        21 gk~v~ViGgg~~a~e~A~~l~~~~~~Vtiv~~~~~~~~~~~~--~~~~~~~~i   71 (114)
T 3cty_A           21 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAY--VQEIKKRNI   71 (114)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHH--HHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH--HHHHHHCCC
T ss_conf             976899855001134444553046268640345400000113--345430320


No 127
>>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} (A:1-111,A:270-318)
Probab=30.17  E-value=34  Score=14.47  Aligned_cols=30  Identities=23%  Similarity=0.128  Sum_probs=25.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             999469857999999999968998245158
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      |||+|||.-=+..|.+|.+.+....|++-.
T Consensus         3 vvIIGgG~aGl~~A~~L~~~~~~~~I~li~   32 (160)
T 1nhp_A            3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYE   32 (160)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             999997899999999998069688389991


No 128
>>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* (A:1-69,A:187-260,A:371-427)
Probab=30.11  E-value=34  Score=14.46  Aligned_cols=52  Identities=10%  Similarity=-0.047  Sum_probs=37.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC--CHHHHHHHHHHHCCCC
Q ss_conf             899946985799999999996899824515876546--7899999876515886
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV--SKDILLQKIPIRQDLA   90 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~--~~~~~~~~~~~~~~i~   90 (207)
                      -++|.|||.-=+..|..|.+.|....++-.......  .....+.+.+.+.|+.
T Consensus        34 ~v~iiG~G~~g~~~a~~~~~~g~~v~~~~~~~~~~~p~~l~~~l~~~~~~~Gv~   87 (200)
T 2rgh_A           34 DLLIIGGGITGAGVAVQAAASGIKTGLIEXQDFAEGDARLVIDNIKKAAEDGAY   87 (200)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHCHHHHHHHHHHHHHHHHC
T ss_conf             499989619999999999977998999969978540378888887777765420


No 129
>>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} (A:17-217)
Probab=30.06  E-value=34  Score=14.46  Aligned_cols=44  Identities=9%  Similarity=-0.016  Sum_probs=27.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHH
Q ss_conf             220466666025699999999864--99818985114421999999
Q gi|254780579|r   94 IDIGYKALNTEGNAQEASAWAEKN--NFHHVLIVTHDYHMPRTFLE  137 (207)
Q Consensus        94 I~~e~~s~~T~ena~~~~~~l~~~--~~~~iiLVTs~yHm~RA~~~  137 (207)
                      ++.-..+.-|.|+...+..+.+-.  .-+-++++...|+.......
T Consensus       119 ~i~l~gg~gtl~E~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  164 (201)
T 1wek_A          119 FVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDRGYWEGLVRWL  164 (201)
T ss_dssp             EEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEECHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHH
T ss_conf             5880676305789999999875056543301214786118899999


No 130
>>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} (A:127-259,A:340-385)
Probab=29.86  E-value=35  Score=14.44  Aligned_cols=90  Identities=9%  Similarity=-0.003  Sum_probs=42.6

Q ss_pred             HHHHHHHHCCCCCEECCCC--CCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             9999999689982451587--65467899999876515886133220466666025699999999864998189851144
Q gi|254780579|r   52 RAFELLENQIGEKIFISGV--HHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY  129 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~--~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y  129 (207)
                      ..+++..+...+++.+-..  ..+......++..+.+.|+.-....... ...+..+......-++..+-+-++++.+.-
T Consensus         4 al~~~l~~~g~kkVaiI~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~-~~~~~~D~~~~i~~i~~~~pd~Vi~~~~~~   82 (179)
T 1pea_A            4 PLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIP-LYPSDDDLQRAVERIYQARADVVFSTVVGT   82 (179)
T ss_dssp             HHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC-SSCCHHHHHHHHHHHHHHTCSEEEEECCTH
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCHHHHHHHHHHHCCCCEEEEEEECH
T ss_conf             9999998717847998226776235565546666664168357899616-764420168999998751899899996347


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             2199999999862
Q gi|254780579|r  130 HMPRTFLELQRIN  142 (207)
Q Consensus       130 Hm~RA~~~f~~~~  142 (207)
                      .+...+..+++..
T Consensus        83 ~~~~~l~qa~~~G   95 (179)
T 1pea_A           83 GTAELYRAIARRY   95 (179)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC
T ss_conf             7999999999847


No 131
>>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} (A:1-8,A:70-209)
Probab=29.81  E-value=35  Score=14.43  Aligned_cols=68  Identities=15%  Similarity=0.008  Sum_probs=45.1

Q ss_pred             CCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             588613322046666602569999999986499818985114421999999998629987999641676
Q gi|254780579|r   87 QDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus        87 ~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                      ..+....+++-..-.+|=.....+.+.++++|.+++.++|.--=..+... ..+..++..++.....++
T Consensus        59 ~~v~gk~ViivDDii~TG~Tl~~~~~~L~~~Ga~~I~~~~l~~~~~~~~~-~~~~~~~~~i~t~~~~~~  126 (148)
T 1i5e_A           59 SDVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKA-VETAHPDVDIYIAALDER  126 (148)
T ss_dssp             TTTTTSEEEEECSEESSSHHHHHHHHHHHHTTCCCEEEECSEECHHHHHH-HHHHCTTCEEEESEECCE
T ss_pred             CCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHH-HHHHCCCCEEEEEEECCC
T ss_conf             76666508987366523266999999999679970899998633889999-999796968999997687


No 132
>>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG, PSI; HET: DTY; 2.80A {Geobacillus stearothermophilus} (A:122-293)
Probab=29.68  E-value=35  Score=14.42  Aligned_cols=41  Identities=12%  Similarity=-0.098  Sum_probs=29.3

Q ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf             76545687899946985799999999996899824515876
Q gi|254780579|r   31 IPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH   71 (207)
Q Consensus        31 ~~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~   71 (207)
                      ....++.|.++|.|||..=-..++.+.+.+-...|.++...
T Consensus        23 ~~~~~~g~~Vli~gag~~vG~~a~~~ak~~g~~vi~~~~~~   63 (172)
T 1xa0_A           23 HGLTPERGPVLVTGATGGVGSLAVSXLAKRGYTVEASTGKA   63 (172)
T ss_dssp             TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf             24578876499935757665444323124785035530551


No 133
>>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} (A:1-34,A:114-150,A:297-347)
Probab=29.62  E-value=35  Score=14.41  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=26.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             5687899946985799999999996899824515
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      ++.|.| |.|||+.=+..|+.+.+.|....++=.
T Consensus         2 ~~~d~~-iig~gp~g~~aa~~~~~~~~~~~~~e~   34 (122)
T 3lad_A            2 QKFDVI-VIGAGPGGYVAAIKSAQLGLKTALIEK   34 (122)
T ss_dssp             CCCSEE-EECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             717699-988888999999999978893999950


No 134
>>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 2q6u_A* (A:1-41,A:153-211,A:330-397)
Probab=29.49  E-value=35  Score=14.40  Aligned_cols=53  Identities=13%  Similarity=0.176  Sum_probs=38.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC-CHHHHHHHHHHHCCCC
Q ss_conf             87899946985799999999996899824515876546-7899999876515886
Q gi|254780579|r   37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV-SKDILLQKIPIRQDLA   90 (207)
Q Consensus        37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~-~~~~~~~~~~~~~~i~   90 (207)
                      .| ++|.|||.-=+..|..|.+.|..-.++--+..... .-.+.+.+.+.+.|+.
T Consensus         5 ~~-~~vig~g~~g~~~a~~~~~~g~~v~~~~~~~~~~~~~l~~~l~~~~~~~Gv~   58 (168)
T 2oln_A            5 YD-VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNERGTLAALFTLAQAAGAT   58 (168)
T ss_dssp             EE-EEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSHHHHHHHHHHHHHTTCE
T ss_pred             CC-EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf             87-8998968999999999998899689990899887643322100110134321


No 135
>>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain, transport protein; NMR {Escherichia coli K12} (A:)
Probab=29.06  E-value=36  Score=14.35  Aligned_cols=55  Identities=5%  Similarity=0.068  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHH-HCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             678999998765-1588613322046666602569999999986499818985114
Q gi|254780579|r   74 VSKDILLQKIPI-RQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        74 ~~~~~~~~~~~~-~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      .+..++...... ...-++..|.+-......|+......+.+++.|++++-|+|..
T Consensus        39 v~~~~l~~~l~~~~~~~~~~~V~i~aD~~~~y~~vv~vmd~l~~aG~~~v~l~t~~   94 (99)
T 2pfu_A           39 VTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEE   94 (99)
T ss_dssp             ECSSSHHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTTCC
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             13066899999998358997599980799878899999999998699769999678


No 136
>>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} (A:)
Probab=28.69  E-value=5.4  Score=19.38  Aligned_cols=65  Identities=8%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             HHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             515886133220466666025699999999864998189851144219999999986299879996416
Q gi|254780579|r   85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPII  153 (207)
Q Consensus        85 ~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~  153 (207)
                      ....+....+++-..--+|=.....+.+.+++.|.++|.++ +..=.+++...+...   .+++..-++
T Consensus       114 ~~~~v~gk~viIvDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~-~~i~~~~a~~~l~~~---~d~v~~~~~  178 (208)
T 1wd5_A          114 PKAARKGRDVVLVDDGVATGASXEAALSVVFQEGPRRVVVA-VPVASPEAVERLKAR---AEVVALSVP  178 (208)
T ss_dssp             CCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEE-EEEBCHHHHHHHHTT---SEEEEEECC
T ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHCCCC---CCEEEECCC
T ss_conf             96244898899994221434669999999983699889998-224886788650457---998998788


No 137
>>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* (A:1-40,A:148-221,A:327-383)
Probab=28.67  E-value=36  Score=14.31  Aligned_cols=53  Identities=8%  Similarity=0.004  Sum_probs=35.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC--CHHHHHHHHHHHCCCC
Q ss_conf             87899946985799999999996899824515876546--7899999876515886
Q gi|254780579|r   37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV--SKDILLQKIPIRQDLA   90 (207)
Q Consensus        37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~--~~~~~~~~~~~~~~i~   90 (207)
                      .| ++|.|+|.-=+..|.+|.+.|....++=.+.....  .-.+.+.+.+.+.|+.
T Consensus         4 ~~-v~iiG~G~~g~~~a~~la~~g~~v~v~e~~~~~~~d~~l~~~~~~~a~~~Gv~   58 (171)
T 2qcu_A            4 KD-LIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACADARLVLANAQMVVRKGGE   58 (171)
T ss_dssp             BS-EEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCE
T ss_pred             CC-EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             79-89999679999999999978997999969977460078799999866651434


No 138
>>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} (A:1-132)
Probab=28.39  E-value=37  Score=14.28  Aligned_cols=61  Identities=3%  Similarity=-0.209  Sum_probs=38.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC--CCCCCCCHHHHHHHHHHHCCCCHHHEE
Q ss_conf             5687899946985799999999996899824515--876546789999987651588613322
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS--GVHHSVSKDILLQKIPIRQDLAECCID   95 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S--G~~~~~~~~~~~~~~~~~~~i~~~~I~   95 (207)
                      ...+++|.++||.+=...+.-+.+.+......+.  .+.....+.+.++..+...|++-..+.
T Consensus        24 ~~~~v~v~~SGG~DS~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~i~~~~i~   86 (132)
T 1xng_A           24 GFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYS   86 (132)
T ss_dssp             TCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             998299978788899999999998624330787225301561133679999998531340000


No 139
>>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris} (A:1-30,A:184-331)
Probab=28.23  E-value=37  Score=14.26  Aligned_cols=71  Identities=7%  Similarity=-0.011  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHCCCCC-EEC------CC-CCCCCCHHHHHHHHHHH--CCCCHHHEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             579999999999689982-451------58-76546789999987651--588613322046666602569999999986
Q gi|254780579|r   47 PIRIERAFELLENQIGEK-IFI------SG-VHHSVSKDILLQKIPIR--QDLAECCIDIGYKALNTEGNAQEASAWAEK  116 (207)
Q Consensus        47 ~~Ri~~a~~L~~~g~~~~-ii~------SG-~~~~~~~~~~~~~~~~~--~~i~~~~I~~e~~s~~T~ena~~~~~~l~~  116 (207)
                      +.|+.+|+++.+....+. ++.      +. .....+++++.....+.  +|...-.|+-+..-.+|.++.+..++++..
T Consensus        85 r~RV~EA~RVa~~~~~~lPVf~Y~r~~y~d~t~~fLs~~DL~~TigesaalGaaGvViWGss~~~~Sk~~C~~l~~Yl~~  164 (178)
T 2atm_A           85 QGRVKEAVRISNNLKHSPKVLSYWWYVYQDETNTFLTETDVKKTFQEIVINGGDGIIIWGSSSDVNSLSKCKRLQDYLLT  164 (178)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEEEESEETTEEEEECCHHHHHHHHHHHHHTTCCEEEEECCGGGGSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             99999999998606899853545535761651355788999999999998499889995464001688988989999861


Q ss_pred             C
Q ss_conf             4
Q gi|254780579|r  117 N  117 (207)
Q Consensus       117 ~  117 (207)
                      .
T Consensus       165 ~  165 (178)
T 2atm_A          165 V  165 (178)
T ss_dssp             T
T ss_pred             C
T ss_conf             6


No 140
>>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} (A:1-193)
Probab=28.23  E-value=37  Score=14.26  Aligned_cols=92  Identities=7%  Similarity=-0.110  Sum_probs=50.5

Q ss_pred             CCCCCCEEEEECCCHHH-HH--HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH
Q ss_conf             54568789994698579-99--9999999689982451587654678999998765158861332204666660256999
Q gi|254780579|r   33 DHPSVSAIVVLTGEPIR-IE--RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQE  109 (207)
Q Consensus        33 ~~~~~DaIVVLgGg~~R-i~--~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~  109 (207)
                      ...+++-|.+.|-|..- +.  .+..|.+.++.+....++       .+....... ..-+++++++-..+..|-+ ...
T Consensus        39 ~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l~~~~~~~~~~-------~~~~~~~~~-~~~~~d~vI~iS~sG~t~~-~~~  109 (193)
T 3fj1_A           39 RLRDPSFVATVARGSSDHVCTYLSYAAELLLGLPVASLGP-------SVASVYDAR-LRLDRALCLAVSQSGKSPD-IVA  109 (193)
T ss_dssp             HHHCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEECCT-------HHHHTTCCC-CCCTTEEEEEEESSSCCHH-HHH
T ss_pred             HHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECH-------HHHHHCCCC-CCCCCEEEEEEECCCCCHH-HHH
T ss_conf             3069878999951289999999999999984998599515-------255441366-7889849999977899748-999


Q ss_pred             HHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             9999986499818985114421999
Q gi|254780579|r  110 ASAWAEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus       110 ~~~~l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      +.+.++++|. .++.+|+....+-+
T Consensus       110 ~~~~ak~~g~-~vi~iT~~~~s~l~  133 (193)
T 3fj1_A          110 XTRNAGRDGA-LCVALTNDAASPLA  133 (193)
T ss_dssp             HHHHHHHTTC-EEEEEESCTTSHHH
T ss_pred             HHHHHHHCCC-EEEEEECCCCCCCC
T ss_conf             9999877599-49998447998701


No 141
>>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} (A:121-221)
Probab=27.14  E-value=33  Score=14.58  Aligned_cols=50  Identities=14%  Similarity=0.096  Sum_probs=29.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             687899946985799999999996899824515876546789999987651588
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDL   89 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i   89 (207)
                      ...-++|+|||..=++.|..|.+-+..-.++..|......    ++..+...++
T Consensus        20 ~gk~v~ViG~g~~a~~~A~~l~~~~~~Vti~~~~~~~~~~----~~~~l~~~~i   69 (101)
T 3fbs_A           20 DQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDAD----QHALLAARGV   69 (101)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTSEEEEECTTTCCCCHH----HHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHCHH----HHHHHHHCHH
T ss_conf             7987999658746999999997389889998276110757----8998742200


No 142
>>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:120-235)
Probab=27.10  E-value=39  Score=14.14  Aligned_cols=57  Identities=11%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-----CCHHHHHHHHHHHCCCC
Q ss_conf             4568789994698579999999999689982451587654-----67899999876515886
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHS-----VSKDILLQKIPIRQDLA   90 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-----~~~~~~~~~~~~~~~i~   90 (207)
                      .....-++|.|||.-=++.|..|.+.|....++..+....     ....+.....+.+.|+.
T Consensus        23 ~~~~~~v~IiGgG~~GiE~A~~l~~~g~~v~li~~~~~~l~~~~~~~~~~~~~~~l~~~GV~   84 (116)
T 2gqw_A           23 LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVD   84 (116)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf             25676308972411111112221221035776425550012246577899999986521103


No 143
>>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} (A:108-263,A:347-379)
Probab=27.05  E-value=39  Score=14.13  Aligned_cols=89  Identities=9%  Similarity=0.055  Sum_probs=61.2

Q ss_pred             HHHHH-HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf             99999-68998245158765467899999876515886133220-46666602569999999986499818985114421
Q gi|254780579|r   54 FELLE-NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDI-GYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM  131 (207)
Q Consensus        54 ~~L~~-~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~-e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm  131 (207)
                      ++|.+ -++....+++..+.+....+.+...+...++.-..... .....++.++.....+-+++.+.+-+++.++..+.
T Consensus         6 ~dll~~f~W~~V~iIyddd~g~~~l~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~l~~i~~~~arVIIl~~~~~~~   85 (189)
T 3kg2_A            6 LSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKV   85 (189)
T ss_dssp             HHHHHHTTCSEEEEEECGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHH
T ss_pred             HHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf             99999879989999997955388999999999976998999998715888744779999998762599889999352787


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999862
Q gi|254780579|r  132 PRTFLELQRIN  142 (207)
Q Consensus       132 ~RA~~~f~~~~  142 (207)
                      ++-+....+..
T Consensus        86 ~~ll~~a~~~~   96 (189)
T 3kg2_A           86 NDIVDQVITIG   96 (189)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
T ss_conf             89999999737


No 144
>>3g68_A Putative phosphosugar isomerase; YP_001089791.1, SIS domain, double-SIS domain protein, structural genomics; HET: MSE CIT; 1.80A {Clostridium difficile 630} (A:1-188)
Probab=26.73  E-value=39  Score=14.10  Aligned_cols=94  Identities=6%  Similarity=-0.113  Sum_probs=53.5

Q ss_pred             CCCCCCCCEEEEECCCHHHHH---HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHH
Q ss_conf             765456878999469857999---99999996899824515876546789999987651588613322046666602569
Q gi|254780579|r   31 IPDHPSVSAIVVLTGEPIRIE---RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNA  107 (207)
Q Consensus        31 ~~~~~~~DaIVVLgGg~~Ri~---~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena  107 (207)
                      .....+++-|.+.|-|..-..   .+..|.+.+..+..+..+...       ... .....-++++++.-..+..|.+ .
T Consensus        28 ~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~d~vI~iS~sG~t~e-~   98 (188)
T 3g68_A           28 EVKRTNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKXYPFXI-------TED-TFKFDNENTLVVGVSQGGSSYS-T   98 (188)
T ss_dssp             TGGGSCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEEECGGGC-------CGG-GGSSCCTTEEEEEEESSSCCHH-H
T ss_pred             HHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH-------EEC-CCCCCCCCCEEEEEECCCCCHH-H
T ss_conf             998679997999997108999999999999985999899412453-------003-3212468863887607868589-9


Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             999999986499818985114421999
Q gi|254780579|r  108 QEASAWAEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus       108 ~~~~~~l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      ....+.++++|. .++.+|+..+.+=+
T Consensus        99 ~~~~~~ak~~g~-~vi~iT~~~~s~l~  124 (188)
T 3g68_A           99 YNAXKLAEDKGC-KIASXAGCKNALID  124 (188)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSTTCGGG
T ss_pred             HHHHHHHHHCCC-CCCCCCCCCCCCCH
T ss_conf             999987765386-42235566666201


No 145
>>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (A:95-371)
Probab=26.70  E-value=39  Score=14.10  Aligned_cols=96  Identities=7%  Similarity=-0.018  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCC-------HHHHHHHHHHHHHHCCC
Q ss_conf             57999999999968998245158765467899999876515886133220466666-------02569999999986499
Q gi|254780579|r   47 PIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALN-------TEGNAQEASAWAEKNNF  119 (207)
Q Consensus        47 ~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~-------T~ena~~~~~~l~~~~~  119 (207)
                      ..-+...+..........+++.+.+....|.....+...+.+..+..+.+-..+..       +-.-+...++++.++|-
T Consensus        82 KT~Ll~~i~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~t~vv~~ts~~~~~~r~~~~~~a~~~AE~~r~~G~  161 (277)
T 1fx0_A           82 KTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRER  161 (277)
T ss_dssp             HHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             77899998876527885899997211389999999964027863233100246667788888888889899999996467


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             81898511442199999999862
Q gi|254780579|r  120 HHVLIVTHDYHMPRTFLELQRIN  142 (207)
Q Consensus       120 ~~iiLVTs~yHm~RA~~~f~~~~  142 (207)
                      +-+++..|=...-||..+.....
T Consensus       162 ~Vll~~Dsltr~a~A~reis~~~  184 (277)
T 1fx0_A          162 HTLIIYDDLSKQAQAYRQMSLLL  184 (277)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCHHHHHHHHHHHHHHC
T ss_conf             72699618589999999999862


No 146
>>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} (A:347-470)
Probab=26.50  E-value=40  Score=14.07  Aligned_cols=81  Identities=12%  Similarity=0.091  Sum_probs=50.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHH
Q ss_conf             56878999469857999999999968998245158765467899999876515886133220466666025699999999
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWA  114 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l  114 (207)
                      -++++|||++-+..   .|..+.+..+..+|+.--     ......+.+....|+..   .+-+...++.+-..++.+++
T Consensus        23 l~a~aIv~~T~sG~---ta~~iSk~Rp~~pI~a~t-----~~~~~~r~L~l~~GV~p---~~~~~~~~~~~~~~~a~~~l   91 (124)
T 1e0t_A           23 LDAPLIVVATQGGK---SARAVRKYFPDATILALT-----TNEKTAHQLVLSKGVVP---QLVKEITSTDDFYRLGKELA   91 (124)
T ss_dssp             TTCSBEEEECSSSH---HHHHHHTTCCSSBEEEEE-----SCHHHHHHGGGSTTEEE---EECSCCCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCH---HHHHHHHHCCCCCEEEEC-----CCHHHHHHHHCCCCEEE---EECCCCCCHHHHHHHHHHHH
T ss_conf             59988999889828---999999559899989988-----98899988654177599---98289899999999999999


Q ss_pred             HHCCC----CEEEEEC
Q ss_conf             86499----8189851
Q gi|254780579|r  115 EKNNF----HHVLIVT  126 (207)
Q Consensus       115 ~~~~~----~~iiLVT  126 (207)
                      +++|+    ..++++.
T Consensus        92 ~~~g~~~~Gd~vvi~~  107 (124)
T 1e0t_A           92 LQSGLAHKGDVVVMVS  107 (124)
T ss_dssp             HHTSSSCTTCEEEEEE
T ss_pred             HHCCCCCCCCEEEEEE
T ss_conf             9779989979899993


No 147
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:7-118,A:1059-1073)
Probab=26.43  E-value=40  Score=14.06  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=8.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             78999469857999999999968
Q gi|254780579|r   38 SAIVVLTGEPIRIERAFELLENQ   60 (207)
Q Consensus        38 DaIVVLgGg~~Ri~~a~~L~~~g   60 (207)
                      |+|++--||+-.++.|++|.+.|
T Consensus        78 dgVLlt~GGQtaLN~~i~L~~~G  100 (127)
T 1a9x_A           78 DAVLPTMGGQTALNCALELERQG  100 (127)
T ss_dssp             SEEECSSSHHHHHHHHHHHHHTT
T ss_pred             CEEEECCCCHHHHHHHHHHHHCC
T ss_conf             99996887725789899999759


No 148
>>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinone reduction, structural genomics, structural genomics consortium, SGC; HET: NAP; 1.85A {Homo sapiens} (A:154-318)
Probab=26.16  E-value=40  Score=14.04  Aligned_cols=39  Identities=8%  Similarity=-0.168  Sum_probs=27.7

Q ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             765456878999469857999999999968998245158
Q gi|254780579|r   31 IPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        31 ~~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      ..+.++.|-|+|.|++..=-..++.+.+..-...+.++.
T Consensus        12 ~~~i~~g~~VlI~Ga~g~vG~~a~~~a~~~g~~vi~~~~   50 (165)
T 1yb5_A           12 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG   50 (165)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             138999399999889669999999999984995999603


No 149
>>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78)
Probab=26.14  E-value=33  Score=14.57  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=16.4

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             65456878999469857999999999
Q gi|254780579|r   32 PDHPSVSAIVVLTGEPIRIERAFELL   57 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~   57 (207)
                      .....+|.+|++||+ +-+..|++++
T Consensus        37 ~~~~~~Dlvi~iGGD-GT~L~a~~~~   61 (78)
T 1yt5_A           37 PGRVTADLIVVVGGD-GTVLKAAKKA   61 (78)
T ss_dssp             CSCBCCSEEEEEECH-HHHHHHHTTB
T ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHH
T ss_conf             556787899998985-9999999971


No 150
>>1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} (A:144-230)
Probab=26.08  E-value=40  Score=14.03  Aligned_cols=50  Identities=16%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC---CCCHHHHHHHHHHHCCC
Q ss_conf             999469857999999999968998245158765---46789999987651588
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHH---SVSKDILLQKIPIRQDL   89 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~---~~~~~~~~~~~~~~~~i   89 (207)
                      ++|.|||.-=++.|..|.+.|..-.++-.+...   .....+...+.+.+.++
T Consensus         3 v~VvGgG~~G~E~A~~l~~~g~~Vtii~~~~~~~~~~~~~~~~~~~~l~~~gI   55 (87)
T 1xhc_A            3 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGV   55 (87)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTE
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             21346765431126668655872156431024435764899999999986597


No 151
>>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} (A:141-319)
Probab=25.93  E-value=41  Score=14.01  Aligned_cols=38  Identities=11%  Similarity=-0.066  Sum_probs=29.2

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             65456878999469857999999999968998245158
Q gi|254780579|r   32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      .+.++.|-|+|.|+|..=-..++++.+..-...+.++.
T Consensus        19 ~~l~~g~~VlI~Ga~~~vG~~a~qla~~~g~~vi~~~~   56 (179)
T 2c0c_A           19 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS   56 (179)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEEC
T ss_conf             11225786169767876554220100357988999989


No 152
>>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-111,A:252-310)
Probab=25.80  E-value=41  Score=13.99  Aligned_cols=30  Identities=10%  Similarity=0.127  Sum_probs=25.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             999469857999999999968998245158
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      |||.|||+-=+..|.+|.+.|....++-.+
T Consensus         4 VvVIGgGpaGl~aA~~la~~G~~V~iiE~~   33 (170)
T 1fl2_A            4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (170)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999998799999999999789988999807


No 153
>>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, FMN, FAD, iron, 3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} (G:117-216,G:400-456)
Probab=25.53  E-value=41  Score=13.96  Aligned_cols=36  Identities=14%  Similarity=0.071  Sum_probs=29.8

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             456878999469857999999999968998245158
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      ++...-|.|.|+|+-=+..|..|.++|+...|+=..
T Consensus         3 ~~~gkkVaVIGaGpaGl~~A~~La~~G~~Vti~E~~   38 (157)
T 2vdc_G            3 RELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRY   38 (157)
T ss_dssp             SSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             456866999777658999999998469978999447


No 154
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:114-248)
Probab=25.20  E-value=42  Score=13.93  Aligned_cols=98  Identities=10%  Similarity=0.002  Sum_probs=62.3

Q ss_pred             HHHHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             999999968998245158765467---89999987651588613322046666602569999999986499818985114
Q gi|254780579|r   52 RAFELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD  128 (207)
Q Consensus        52 ~a~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~  128 (207)
                      +-++....|.....+++|......   ..+-.++.+.+.+....... .....+..+......+++..++--..++++++
T Consensus        11 ~l~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d   89 (135)
T 1gud_A           11 FIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVAS-QPADWDRIKALDVATNVLQRNPNIKAIYCAND   89 (135)
T ss_dssp             HHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEE-EECTTCHHHHHHHHHHHHHHCTTCCEEEESSH
T ss_pred             HHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCEEEE-ECCCHHHHHHHHHHHHHHHHCCCCCEEECCCH
T ss_conf             99986277862474036874017888875010345530577640356-41530158999999987652257412322676


Q ss_pred             HHHHHHHHHHHHHC-C-CCEEEEE
Q ss_conf             42199999999862-9-9879996
Q gi|254780579|r  129 YHMPRTFLELQRIN-S-TVQFIPY  150 (207)
Q Consensus       129 yHm~RA~~~f~~~~-p-~i~i~~~  150 (207)
                      .+...+...++... | ++.++.+
T Consensus        90 ~~a~g~~~al~~~g~p~~i~v~g~  113 (135)
T 1gud_A           90 TMAMGVAQAVANAGKTGKVLVVGT  113 (135)
T ss_dssp             HHHHHHHHHHHHTTCTTTSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             999999999997799988389973


No 155
>>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* (A:183-372)
Probab=25.11  E-value=42  Score=13.92  Aligned_cols=48  Identities=13%  Similarity=0.001  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             698579999999999689982451587654678999998765158861
Q gi|254780579|r   44 TGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAE   91 (207)
Q Consensus        44 gGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~   91 (207)
                      .++.+-++.++++.++...|.|++.++.......+....+....++|-
T Consensus         7 ~~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~~iPv   54 (190)
T 2pgn_A            7 HAPNEDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPV   54 (190)
T ss_dssp             CCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE
T ss_conf             575899999876530234333345653123443899999999829747


No 156
>>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} (A:1-130,A:256-265)
Probab=24.80  E-value=29  Score=14.92  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=20.9

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEC
Q ss_conf             654568789994698579999999999689982451
Q gi|254780579|r   32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFI   67 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~   67 (207)
                      .....+|.||++||+ +-+..|+++++.+ .|.+=+
T Consensus        64 ~~~~~~D~vI~lGGD-GT~L~a~~~~~~~-~PvlGI   97 (140)
T 1z0s_A           64 EELENFDFIVSVGGD-GTILRILQKLKRC-PPIFGI   97 (140)
T ss_dssp             GGGGGSSEEEEEECH-HHHHHHHTTCSSC-CCEEEE
T ss_pred             HHCCCCCEEEEECCC-HHHHHHHHHHCCC-CCEEEE
T ss_conf             121279999998783-9999999981899-868998


No 157
>>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, alternative splicing, ATP-binding; HET: SEP ANP; 2.90A {Homo sapiens} (B:)
Probab=24.72  E-value=43  Score=13.87  Aligned_cols=59  Identities=12%  Similarity=0.011  Sum_probs=44.1

Q ss_pred             HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             68998245158765467899999876515886133220466666025699999999864
Q gi|254780579|r   59 NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKN  117 (207)
Q Consensus        59 ~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~  117 (207)
                      ......|++++.....++.++...+..--.|..+.|..+..+--++++...+.+-++..
T Consensus        13 ~~~~~~i~V~nLp~~~t~~~L~~~F~~~G~V~~~~i~~~~~~fv~f~~~~~A~~Ai~~~   71 (115)
T 3beg_B           13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKL   71 (115)
T ss_dssp             ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             99885899996436898999976532121011210134514899989999999999987


No 158
>>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} (A:205-389,A:582-616)
Probab=24.72  E-value=43  Score=13.87  Aligned_cols=103  Identities=14%  Similarity=0.043  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHE------ECCCCCC-----CHHHHHHHHHH
Q ss_conf             698579999999999689982451587654678999998765158861332------2046666-----60256999999
Q gi|254780579|r   44 TGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCI------DIGYKAL-----NTEGNAQEASA  112 (207)
Q Consensus        44 gGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I------~~e~~s~-----~T~ena~~~~~  112 (207)
                      ..+.+-++.++++.++...|.|++.++.......+..+.+....|+|-...      +-+....     .-...-....+
T Consensus         6 ~~~~~~i~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~Lae~lgiPV~~t~~~kg~~~~~hP~~~G~~~g~~~~~~~~~   85 (220)
T 2pan_A            6 AASRXQIEKAVEXLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLXGWGCIPDDHELXAGXVGLQTAHRYGNA   85 (220)
T ss_dssp             CCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTBCCCCSSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             00006899999999738982899777501130899999999720787323435567532333232322345444223443


Q ss_pred             HHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9986499818985114421999999998629987999
Q gi|254780579|r  113 WAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIP  149 (207)
Q Consensus       113 ~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~  149 (207)
                      ++++-+  -|++|=..+-.......-. ..++.+++-
T Consensus        86 ~l~~aD--lIL~iG~~l~~~~t~~~~~-~~~~~~iI~  119 (220)
T 2pan_A           86 TLLASD--XVFGIGNRFANRHTGSVEK-YTEGRKIVH  119 (220)
T ss_dssp             HHHHCS--EEEEESCCCCHHHHSSHHH-HHTTCEEEE
T ss_pred             HCCCCC--EEEEECCCCCCCCCCCCCC-CCCCCEEEE
T ss_conf             034331--1344144555434322123-588981899


No 159
>>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} (A:1-127,A:277-330)
Probab=24.66  E-value=43  Score=13.86  Aligned_cols=41  Identities=12%  Similarity=-0.014  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             899999876515886133220466666025699999999864998
Q gi|254780579|r   76 KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH  120 (207)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~  120 (207)
                      ..+.... +.+.|.   .|+.|.-...|.+++....+..+++|..
T Consensus        80 H~~~a~~-aL~~GK---hVl~EKP~a~t~eea~eL~~~A~~~gv~  120 (181)
T 3e9m_A           80 HYSAAKL-ALSQGK---PVLLEKPFTLNAAEAEELFAIAQEQGVF  120 (181)
T ss_dssp             HHHHHHH-HHHTTC---CEEECSSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHH-HCCCCH---HHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1021133-224331---2220345432211012221122223433


No 160
>>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structural genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} (A:)
Probab=24.52  E-value=43  Score=13.85  Aligned_cols=101  Identities=15%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHH---CCCCCEEC-CCCC--CCCCHHHH-HHHHHHHCCCCHHHEECCCCC------CCHHHHHHHHHHH
Q ss_conf             5799999999996---89982451-5876--54678999-998765158861332204666------6602569999999
Q gi|254780579|r   47 PIRIERAFELLEN---QIGEKIFI-SGVH--HSVSKDIL-LQKIPIRQDLAECCIDIGYKA------LNTEGNAQEASAW  113 (207)
Q Consensus        47 ~~Ri~~a~~L~~~---g~~~~ii~-SG~~--~~~~~~~~-~~~~~~~~~i~~~~I~~e~~s------~~T~ena~~~~~~  113 (207)
                      +..+..+.+.++.   |...++-. .|-.  ....+... -...+.+.|..+-.+.+....      .--+++.....+.
T Consensus        71 p~~v~~a~~~L~~~~~gs~v~v~tVigFP~G~~~~~~K~~E~~~A~~~GAdEID~V~n~~~l~~g~~~~v~~ei~~i~~~  150 (281)
T 2a4a_A           71 PKFVKFINEKIKQEINPFKPKIACVINFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSV  150 (281)
T ss_dssp             GGGHHHHHHHHHHHSSSCCSEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             78899999998742478885277307899776626589999999998299757872458998436569999899999999


Q ss_pred             HHHCC-C-CEEEEECC---HHH-HHHHHHHHHHHCCCCEEEE
Q ss_conf             98649-9-81898511---442-1999999998629987999
Q gi|254780579|r  114 AEKNN-F-HHVLIVTH---DYH-MPRTFLELQRINSTVQFIP  149 (207)
Q Consensus       114 l~~~~-~-~~iiLVTs---~yH-m~RA~~~f~~~~p~i~i~~  149 (207)
                      .+..+ . -++||=|.   +-. .++|..+...+  |.+++-
T Consensus       151 ~~~~~~~~lKvIlEt~~L~~~e~I~~a~~ia~~a--GadfIK  190 (281)
T 2a4a_A          151 KKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNG--NADFIK  190 (281)
T ss_dssp             HTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTT--TCSEEE
T ss_pred             HHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHC--CCCHHE
T ss_conf             8753797279874000047789999999999841--531420


No 161
>>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NADP-binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* (A:1-127,A:284-371)
Probab=24.41  E-value=44  Score=13.83  Aligned_cols=21  Identities=24%  Similarity=0.370  Sum_probs=8.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHC
Q ss_conf             999469857999999999968
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQ   60 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g   60 (207)
                      +-|+.||-+.+.+|++++|+|
T Consensus       173 ~~v~~gGl~~v~~gl~~lr~g  193 (215)
T 3gqv_A          173 LRVVQGGFDHIKQGMELVRKG  193 (215)
T ss_dssp             EEEEEECHHHHHHHHHHHHTT
T ss_pred             EEEEECCHHHHHHHHHHHHCC
T ss_conf             589507999999999999879


No 162
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:110-255)
Probab=24.19  E-value=44  Score=13.81  Aligned_cols=98  Identities=8%  Similarity=-0.062  Sum_probs=63.3

Q ss_pred             HHHHHHHCCC-C-CEECCCCCCCCC----HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH-HHHHHCCC-C-EEE
Q ss_conf             9999996899-8-245158765467----899999876515886133220466666025699999-99986499-8-189
Q gi|254780579|r   53 AFELLENQIG-E-KIFISGVHHSVS----KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS-AWAEKNNF-H-HVL  123 (207)
Q Consensus        53 a~~L~~~g~~-~-~ii~SG~~~~~~----~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~-~~l~~~~~-~-~ii  123 (207)
                      +-.|.++|+. . ..+++|..+..+    ...-+++.+.+.+++...+.......++.+++.... +++..++- + ..+
T Consensus        13 ~~~li~~G~~h~~i~~i~~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai   92 (146)
T 8abp_A           13 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLI   92 (146)
T ss_dssp             HHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEE
T ss_pred             HHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             99836335767606999728987708999999999999974997543333211101367888999974311687640465


Q ss_pred             EECCHHHHHHHHHHHHHHC--C-CCEEEEE
Q ss_conf             8511442199999999862--9-9879996
Q gi|254780579|r  124 IVTHDYHMPRTFLELQRIN--S-TVQFIPY  150 (207)
Q Consensus       124 LVTs~yHm~RA~~~f~~~~--p-~i~i~~~  150 (207)
                      ++++++-...++...++.+  | ++.++.+
T Consensus        93 ~~~nd~~a~g~~~~l~~~g~~p~di~iigf  122 (146)
T 8abp_A           93 VGMNDSTVLGGVRATEGQGFKAADIIGIGI  122 (146)
T ss_dssp             ECSSHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             322348899878899986435786069984


No 163
>>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} (A:1-142,A:288-339)
Probab=24.03  E-value=44  Score=13.79  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=26.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC
Q ss_conf             68789994698579999999999689982451587
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGV   70 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~   70 (207)
                      +.|+ ||.|||+.=+..|..|.++|....++-.+.
T Consensus         3 ~yDV-IVIGaGpAGl~aA~~la~~G~kV~iIE~~~   36 (194)
T 2a8x_A            3 HYDV-VVLGAGPGGYVAAIRAAQLGLSTAIVEPKY   36 (194)
T ss_dssp             EEEE-EEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCE-EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             3488-998988899999999996879099996899


No 164
>>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... (A:186-247)
Probab=23.98  E-value=44  Score=13.78  Aligned_cols=51  Identities=12%  Similarity=-0.095  Sum_probs=37.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCC
Q ss_conf             899946985799999999996899824515876546----789999987651588
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDL   89 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i   89 (207)
                      -++|.|||.-=++.|..|.+.|....++-.+.....    .-.+...+.+.+.|+
T Consensus         4 ~vvIiG~G~iG~E~A~~l~~~g~~Vtive~~~~il~~~d~~~~~~~~~~l~~~GI   58 (62)
T 3dk9_A            4 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGV   58 (62)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             6999899633302200012012344310102211235421110245665412321


No 165
>>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* (G:328-422)
Probab=23.81  E-value=45  Score=13.76  Aligned_cols=30  Identities=10%  Similarity=-0.221  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf             256999999998649981898511442199
Q gi|254780579|r  104 EGNAQEASAWAEKNNFHHVLIVTHDYHMPR  133 (207)
Q Consensus       104 ~ena~~~~~~l~~~~~~~iiLVTs~yHm~R  133 (207)
                      .+........++++|..+.+-|+.+||.+.
T Consensus        50 ~~~l~~~~~~l~~~g~~~~L~v~~afHs~~   79 (95)
T 2uva_G           50 PISLYGLNLRLRKVKAPTGLDQNRIPFTQR   79 (95)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCCTTSCGGGS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf             899999999999740576322220766667


No 166
>>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} (A:1-122,A:268-335)
Probab=23.77  E-value=45  Score=13.76  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=26.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             545687899946985799999999996899824515
Q gi|254780579|r   33 DHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      .....|+ +|.|||+.=+..|..|.+.|..-.|+=.
T Consensus        11 ~~~~~DV-iVIGaGpAGl~aA~~la~~G~~V~viE~   45 (190)
T 2a87_A           11 HHPVRDV-IVIGSGPAGYTAALYAARAQLAPLVFEG   45 (190)
T ss_dssp             CCCCEEE-EEECCHHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCCCCE-EEECCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf             7988879-9989879999999999988996899867


No 167
>>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273)
Probab=23.71  E-value=45  Score=13.75  Aligned_cols=68  Identities=10%  Similarity=0.139  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9999999986499818985114421999999998629--98799964167666754211698999999999999
Q gi|254780579|r  107 AQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINS--TVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLK  178 (207)
Q Consensus       107 a~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p--~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K  178 (207)
                      +.+..+.++++|.+-+++-.+--| .=+.-.+++.++  =+.+++.-.+...+-..   -+...++.+.+-|+|
T Consensus        63 ~~~~~~~L~~~g~~~IVIACNTAs-a~~ld~Lr~~~~iPiI~iV~~~~~~~~~~~~---~~~~~~~~~~~~~~~  132 (142)
T 2oho_A           63 TWELVNFLLTQNVKMIVFACNTAT-AVAWEEVKAALDIPVLGVVHQKAVEHRFFTT---ANPEIFQEIASIWLK  132 (142)
T ss_dssp             HHHHHHHHHTTTCSEEEECCHHHH-HHHHHHHHHHCSSCEEESHTCCCCCCEEEES---SCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHH-HHHHHHHHHHCCCCEEEEECCCCCCEEEEEC---CCHHHHHHHHHHHCC
T ss_conf             999999998557875999615788-7637877640467646423589866299989---998999999999759


No 168
>>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} (A:1-142,A:285-334)
Probab=23.51  E-value=45  Score=13.73  Aligned_cols=35  Identities=11%  Similarity=0.059  Sum_probs=26.8

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             456878999469857999999999968998245158
Q gi|254780579|r   34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      ....|+| |.|||+.=+..|..|.+.|..-.++=.+
T Consensus         3 ~~~yDvi-VIGaGpAGl~aA~~la~~G~kV~iIE~~   37 (192)
T 1lvl_A            3 TIQTTLL-IIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (192)
T ss_dssp             CEECSEE-EECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             6528999-9967989999999999788979999489


No 169
>>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} (A:187-366)
Probab=23.50  E-value=45  Score=13.73  Aligned_cols=91  Identities=9%  Similarity=0.020  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH-----------HHHHHHHHH
Q ss_conf             985799999999996899824515876546789999987651588613322046666602-----------569999999
Q gi|254780579|r   45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTE-----------GNAQEASAW  113 (207)
Q Consensus        45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~-----------ena~~~~~~  113 (207)
                      ...+.+++.+++.++...|.|++.++.......+....+....|+|-..-.......+..           -.-....+.
T Consensus         6 ~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv~~t~~~kg~~~~~hp~~~~g~~g~~~~~~~~~~   85 (180)
T 1ozh_A            6 APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRL   85 (180)
T ss_dssp             SCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf             99899999999997543986457876545166899999998608971102323676433455434445676564233124


Q ss_pred             HHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf             986499818985114421999999
Q gi|254780579|r  114 AEKNNFHHVLIVTHDYHMPRTFLE  137 (207)
Q Consensus       114 l~~~~~~~iiLVTs~yHm~RA~~~  137 (207)
                      +++-+  -++.+=..+.-......
T Consensus        86 i~~aD--~il~iG~~~~~~~~~~~  107 (180)
T 1ozh_A           86 LQLAD--LVICIGYSPVEYEPAMW  107 (180)
T ss_dssp             HHHCS--EEEEESCCGGGSCGGGT
T ss_pred             CCCCC--EEEECCCCCCCCCCCCC
T ss_conf             65020--46663765566676546


No 170
>>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3k7t_A* (X:1-84,X:194-275,X:379-431)
Probab=22.96  E-value=46  Score=13.66  Aligned_cols=29  Identities=14%  Similarity=0.100  Sum_probs=24.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             99946985799999999996899824515
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      |+|.|||.-=+..|..|.++|....++=.
T Consensus         4 ViIIGaG~aGl~aA~~La~~g~~V~iiE~   32 (219)
T 3k7m_X            4 AIVVGGGFSGLKAARDLTNAGKKVLLLEG   32 (219)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             99989788999999999878998999978


No 171
>>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} (A:143-270)
Probab=22.94  E-value=46  Score=13.66  Aligned_cols=100  Identities=15%  Similarity=0.081  Sum_probs=61.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99946985799999999996899824515876546789999987651588613322046666602569999999986499
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF  119 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~  119 (207)
                      -+|+|=..+-+..|..+.++-..|.++.--..+...+.   ........+....+++-..--+|-+++..+.+.+++.|.
T Consensus        15 d~ivg~~~gg~~~a~~la~~l~~p~~~~~k~~~~~~~~---~~~~~~~~~~gk~vlIvDDii~tG~Tl~~~~~~l~~~ga   91 (128)
T 1u9y_A           15 PIVLAPDKGALEFAKTASKILNAEYDYLEKTRLSPTEI---QIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGA   91 (128)
T ss_dssp             CEEEESSGGGHHHHHHHHHHHTCCEEEBC-------------CCBSSCCCTTCCEEEEEEECSSSHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEE---EEEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCC
T ss_conf             68995687603677877761388546774034444202---453112456686699984154133407999999986699


Q ss_pred             CEEE-EECCHHHHHHHHHHHHHHC
Q ss_conf             8189-8511442199999999862
Q gi|254780579|r  120 HHVL-IVTHDYHMPRTFLELQRIN  142 (207)
Q Consensus       120 ~~ii-LVTs~yHm~RA~~~f~~~~  142 (207)
                      +.+. .|+...+...+...++...
T Consensus        92 ~~v~~~v~~~~~~~~~~~~l~~~~  115 (128)
T 1u9y_A           92 KKIIAACVHPVLIGDALNKLYSAG  115 (128)
T ss_dssp             CSEEEEEEECCCCTTHHHHHHHHT
T ss_pred             CEEEEEEECCCCCHHHHHHHHHCC
T ss_conf             869999989718857999997389


No 172
>>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, thiamin thiazolone diphosphate, inhibitor; HET: TZD; 1.00A {Pseudomonas putida} (A:174-341)
Probab=22.89  E-value=47  Score=13.65  Aligned_cols=48  Identities=6%  Similarity=-0.032  Sum_probs=33.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             985799999999996899824515876546789999987651588613
Q gi|254780579|r   45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAEC   92 (207)
Q Consensus        45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~   92 (207)
                      ...+.+++++++.++.+.|.|++.++.......+...++....|++-.
T Consensus        12 p~~~~i~~~~~~L~~AkrPvii~G~~~~~~~a~~~l~~la~~~~~pv~   59 (168)
T 1q6z_A           12 LNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVW   59 (168)
T ss_dssp             CCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             899999999999973758736614543012667678999997358702


No 173
>>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} (A:127-275)
Probab=22.85  E-value=47  Score=13.65  Aligned_cols=41  Identities=7%  Similarity=-0.160  Sum_probs=28.7

Q ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf             76545687899946985799999999996899824515876
Q gi|254780579|r   31 IPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH   71 (207)
Q Consensus        31 ~~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~   71 (207)
                      ..+.++.|.++|.|++..=-..++++.+..-...+.++...
T Consensus        13 ~~~~~~g~~Vli~Ga~g~vG~~~~~la~~~g~~vi~~~~~~   53 (149)
T 3gms_A           13 TLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN   53 (149)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf             22245532689840576410011000123543211112332


No 174
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:107-247)
Probab=22.70  E-value=47  Score=13.63  Aligned_cols=99  Identities=10%  Similarity=-0.044  Sum_probs=57.3

Q ss_pred             HHHHHHH--CCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHH-HEECCCCCCCHHHHHHHHHHHHHH----CCCCEE
Q ss_conf             9999996--89982451587654678---9999987651588613-322046666602569999999986----499818
Q gi|254780579|r   53 AFELLEN--QIGEKIFISGVHHSVSK---DILLQKIPIRQDLAEC-CIDIGYKALNTEGNAQEASAWAEK----NNFHHV  122 (207)
Q Consensus        53 a~~L~~~--g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~-~I~~e~~s~~T~ena~~~~~~l~~----~~~~~i  122 (207)
                      +-.|.++  |+....+++|.......   ..-....+.+.+.... ..........+.+.+....+.+..    ...-..
T Consensus         9 ~~~l~~~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   88 (141)
T 3l49_A            9 ALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGA   88 (141)
T ss_dssp             HHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCE
T ss_pred             HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             99999974999779999267555225699999999998789982453352034787689999999999986124676756


Q ss_pred             EEECCHHHHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf             985114421999999998629-98799964
Q gi|254780579|r  123 LIVTHDYHMPRTFLELQRINS-TVQFIPYP  151 (207)
Q Consensus       123 iLVTs~yHm~RA~~~f~~~~p-~i~i~~~p  151 (207)
                      ++++++....-+...+++..| ++.++.+-
T Consensus        89 i~~~~d~~a~g~~~al~~~g~~di~ivg~d  118 (141)
T 3l49_A           89 IWACWDVPMIGATQALQAAGRTDIRTYGVD  118 (141)
T ss_dssp             EEESSHHHHHHHHHHHHHTTCCSCEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             996786789999999998299985799984


No 175
>>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} (A:)
Probab=22.11  E-value=48  Score=13.56  Aligned_cols=72  Identities=8%  Similarity=-0.044  Sum_probs=36.4

Q ss_pred             HHHHHHH----HHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9999999----996899824515876546789999987651588613322046666602569999999986499818
Q gi|254780579|r   50 IERAFEL----LENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHV  122 (207)
Q Consensus        50 i~~a~~L----~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~i  122 (207)
                      +..+++.    ++.+....+-+|||.+...-..+...+....+++-..+.++. .....+...+..++.++.|+...
T Consensus        32 ~~~~~~~i~~~~~~~~~v~va~SGGkDS~~lL~ll~~l~~~~~~~i~~~~~d~-g~~~~~~~~~~~~~~~~~~i~~~  107 (325)
T 1zun_A           32 EAESIHIIREVAAEFDNPVXLYSIGKDSAVXLHLARKAFFPGKLPFPVXHVDT-RWKFQEXYRFRDQXVEEXGLDLI  107 (325)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECC-SCCCHHHHHHHHHHHHTTTCCEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999996698799966768999999999998764089856999668-88508999999999999535650


No 176
>>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} (A:119-300)
Probab=22.04  E-value=48  Score=13.55  Aligned_cols=38  Identities=5%  Similarity=-0.132  Sum_probs=30.1

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             65456878999469857999999999968998245158
Q gi|254780579|r   32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      .+.++.|.|+|.|||..=-..++++.+.+.+..+.+..
T Consensus        23 ~~i~~g~~VlI~Ga~~~~G~~aiqla~~~g~~V~~~~~   60 (182)
T 1v3u_A           23 CGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG   60 (182)
T ss_dssp             SCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf             35431104750475554103334467634988866258


No 177
>>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} (A:27-201)
Probab=22.02  E-value=49  Score=13.55  Aligned_cols=110  Identities=10%  Similarity=-0.049  Sum_probs=66.2

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCCCEECCCCCCC-CCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             994698579999999999689982451587654-6789999987651588613322046666602569999999986499
Q gi|254780579|r   41 VVLTGEPIRIERAFELLENQIGEKIFISGVHHS-VSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF  119 (207)
Q Consensus        41 VVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~-~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~  119 (207)
                      ++.|-|.  +.+-.+++++...+.++++|..-. ....+..+..+...++   .+..+-....|.++.....+.+++.+.
T Consensus         7 i~~G~g~--~~~l~~~l~~~g~~~livt~~~~~~~~~~~~v~~~l~~~~~---~v~~~~~~~~~~~~v~~~~~~~~~~~~   81 (175)
T 1oj7_A            7 ILFGKGA--IAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDV---LEFGGIEPNPAYETLMNAVKLVREQKV   81 (175)
T ss_dssp             EEESTTG--GGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEE---EEECCCCSSCBHHHHHHHHHHHHHHTC
T ss_pred             EEECCCH--HHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHCCCCE---EEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             7988599--99999998679968999895168775499999998189947---999181379899999999999975499


Q ss_pred             CEEEEECCHHHHHHHHHHHHHH-------------------CCCCEEEEEECCCC
Q ss_conf             8189851144219999999986-------------------29987999641676
Q gi|254780579|r  120 HHVLIVTHDYHMPRTFLELQRI-------------------NSTVQFIPYPIISH  155 (207)
Q Consensus       120 ~~iiLVTs~yHm~RA~~~f~~~-------------------~p~i~i~~~pv~~~  155 (207)
                      ..|+=|=..-=|=-|+...-..                   .+++-++..|+...
T Consensus        82 d~iiaiGGGsv~D~aK~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~~  136 (175)
T 1oj7_A           82 TFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA  136 (175)
T ss_dssp             CEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred             CEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             7899717877730788999875087420045654305654467788455656576


No 178
>>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} (B:1-125)
Probab=21.97  E-value=49  Score=13.54  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=23.8

Q ss_pred             EEC-CCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHH
Q ss_conf             220-466666025699999999864--9981898511442
Q gi|254780579|r   94 IDI-GYKALNTEGNAQEASAWAEKN--NFHHVLIVTHDYH  130 (207)
Q Consensus        94 I~~-e~~s~~T~ena~~~~~~l~~~--~~~~iiLVTs~yH  130 (207)
                      +++ |+.+.=-.++.....+++++.  +.+.+++||++-+
T Consensus        85 lilDEPT~~LD~~~~~~l~~~l~~~~~~~~tviiitHd~e  124 (125)
T 1f2t_B           85 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE  124 (125)
T ss_dssp             EEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             9971886658999999999999999966999999952089


No 179
>>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} (A:1-108,A:254-297)
Probab=21.81  E-value=49  Score=13.52  Aligned_cols=30  Identities=13%  Similarity=0.256  Sum_probs=25.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             999469857999999999968998245158
Q gi|254780579|r   40 IVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      ++|.|||..=+..|..|.+.|....++=.+
T Consensus         5 ViIVGaG~aGl~aA~~La~~G~~V~iiEk~   34 (152)
T 3fbs_A            5 VIIIGGSYAGLSAALQLGRARKNILLVDAG   34 (152)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             899998799999999999889978999079


No 180
>>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} (A:362-473,A:625-671)
Probab=21.78  E-value=49  Score=13.52  Aligned_cols=31  Identities=13%  Similarity=0.149  Sum_probs=26.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             8999469857999999999968998245158
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      -++|.|||+-=+..|..|.+.|....+|=..
T Consensus        14 ~VaVIGaGpAGL~aA~~la~~G~~V~vlEk~   44 (159)
T 1ps9_A           14 NLAVVGAGPAGLAFAINAAARGHQVTLFDAH   44 (159)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             5999897477899999998721764799421


No 181
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:107-223)
Probab=21.77  E-value=49  Score=13.51  Aligned_cols=95  Identities=9%  Similarity=0.017  Sum_probs=52.1

Q ss_pred             HHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf             999968998245158765467899999876515886133220-4666660256999999998649981898511442199
Q gi|254780579|r   55 ELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDI-GYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPR  133 (207)
Q Consensus        55 ~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~-e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~R  133 (207)
                      .|.++|+....+++|..+..+...- +.........+..+.. .....+.-+.......+.....-...+++.++.....
T Consensus        11 ~L~~~G~~~i~~i~~~~~~~~~~~~-r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~   89 (117)
T 3jy6_A           11 AFRQQGYQHVVVLTSELELSRTRQE-RYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLE   89 (117)
T ss_dssp             HHHTTTCCEEEEEEECSTTCHHHHH-HHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHH
T ss_pred             HHHHCCCCCCEEEECCCCHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHH
T ss_conf             2332024300277047100047888-758999998646975323455317899999998764211000011222013443


Q ss_pred             HHHHHHHHC---C-CCEEEEE
Q ss_conf             999999862---9-9879996
Q gi|254780579|r  134 TFLELQRIN---S-TVQFIPY  150 (207)
Q Consensus       134 A~~~f~~~~---p-~i~i~~~  150 (207)
                      ++..++..+   | ++.++.+
T Consensus        90 ~l~~~~~~g~~iP~di~ivgf  110 (117)
T 3jy6_A           90 FFPNLIISGLIDNQTVTATGF  110 (117)
T ss_dssp             HSHHHHHSSSCCSSSEEEEEB
T ss_pred             HHHHHHHHHCCCCCCCCCCCC
T ss_conf             345666652257763112466


No 182
>>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:178-284,A:444-522)
Probab=21.75  E-value=49  Score=13.51  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=27.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             7899946985799999999996899824515
Q gi|254780579|r   38 SAIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        38 DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      --|+|.|||.-=+..|..|.++|+...++..
T Consensus        11 ~~VaIiGaGpaGl~aA~~L~~~G~~~v~~~e   41 (186)
T 1gte_A           11 AKIALLGAGPASISCASFLARLGYSDITIFE   41 (186)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9699989219999999999848997499994


No 183
>>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 1zpd_A* (A:181-357)
Probab=21.74  E-value=49  Score=13.51  Aligned_cols=49  Identities=8%  Similarity=0.051  Sum_probs=35.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf             9857999999999968998245158765467899999876515886133
Q gi|254780579|r   45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC   93 (207)
Q Consensus        45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~   93 (207)
                      ...+.+.+++++.++...|.|++.++.......+....+....|+|-.+
T Consensus        14 ~~~~~i~~~~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~g~Pv~~   62 (177)
T 2wvg_A           14 SLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVAT   62 (177)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             6799999999998617687685167634202699999999875888014


No 184
>>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} (A:1-233)
Probab=21.45  E-value=50  Score=13.47  Aligned_cols=55  Identities=5%  Similarity=-0.121  Sum_probs=34.0

Q ss_pred             HHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             3322046666602569999999986499818985114421999999998629987999641676
Q gi|254780579|r   92 CCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH  155 (207)
Q Consensus        92 ~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~  155 (207)
                      +.+++-..+..| .+.....++++++|. .++.+|+..+.+=+    +.+  |+ .+.+|+...
T Consensus       142 dlvI~iS~sG~t-~~~~~~~~~ak~~g~-~vI~IT~~~~s~l~----~~a--d~-~l~~~~~~e  196 (233)
T 1nri_A          142 DVLVGIAASGRT-PYVIAGLQYAKSLGA-LTISIASNPKSEXA----EIA--DI-AIETIVGPE  196 (233)
T ss_dssp             SEEEEECTTSCC-HHHHHHHHHHHHHTC-EEEEEESSTTCHHH----HHS--SE-EEECCCCSC
T ss_pred             CEEEEEECCCCC-HHHHHHHHHHHHCCC-CEEEEECCCCCHHH----HHC--CE-EEECCCCCC
T ss_conf             848998689997-778989999875166-25666348874356----858--98-886898877


No 185
>>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} (A:159-268)
Probab=21.32  E-value=50  Score=13.46  Aligned_cols=56  Identities=11%  Similarity=0.005  Sum_probs=40.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCC--CCCCHHHHHHHHHHHCCCC
Q ss_conf             5687899946985799999999996899824515876--5467899999876515886
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVH--HSVSKDILLQKIPIRQDLA   90 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~--~~~~~~~~~~~~~~~~~i~   90 (207)
                      ....-++|.|||.-=++.|..|.+.|..-.++..+..  +.....++.+......++.
T Consensus        12 ~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~i~~~~~~~~~~~~~~~~~~v~   69 (110)
T 3l8k_A           12 KLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN   69 (110)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHEE
T ss_conf             0798899999889999999998618978998641012244433113455554443100


No 186
>>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} (A:187-322,A:469-521)
Probab=21.28  E-value=50  Score=13.45  Aligned_cols=33  Identities=9%  Similarity=0.111  Sum_probs=26.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             6878999469857999999999968998245158
Q gi|254780579|r   36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      ..| +||.|||+.=+..|..|.+.|....++=.+
T Consensus        26 ~yD-ViVIGaGpAGl~aA~~lar~G~kV~viE~~   58 (189)
T 1hyu_A           26 AYD-VLIVGSGPAGAAAAVYSARKGIRTGLMGER   58 (189)
T ss_dssp             CEE-EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCC-EEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             885-899967899999999999789988999816


No 187
>>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} (A:1-152,A:296-346)
Probab=20.74  E-value=52  Score=13.38  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=24.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             87899946985799999999996899824515
Q gi|254780579|r   37 VSAIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      .|+ +|.|||+.=+..|..+.++|....++=-
T Consensus         3 yDv-iIIG~GpaGl~aA~~aa~~G~kV~iiE~   33 (203)
T 1xdi_A            3 TRI-VILGGGPAGYEAALVAATSHPETTQVTV   33 (203)
T ss_dssp             EEE-EEECCSHHHHHHHHHHHHHCTTTEEEEE
T ss_pred             CCE-EEECCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             888-9987888999999999856868898999


No 188
>>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} (A:1-193,A:392-447)
Probab=20.71  E-value=52  Score=13.38  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=26.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf             5456878999469857999999999968998245158
Q gi|254780579|r   33 DHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISG   69 (207)
Q Consensus        33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG   69 (207)
                      ...+.|+ +|.|||.-=+..|+.|.++|....|+=.+
T Consensus        23 ~~~~~DV-iIIGaG~aGL~aA~~La~~G~~V~ilE~~   58 (249)
T 2i0z_A           23 NAMHYDV-IVIGGGPSGLMAAIGAAEEGANVLLLDKG   58 (249)
T ss_dssp             --CCCSE-EEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCE-EEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             7773396-99896799999999999789988999689


No 189
>>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} (A:152-266)
Probab=20.67  E-value=52  Score=13.37  Aligned_cols=56  Identities=14%  Similarity=0.096  Sum_probs=40.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC--C--CCHHHHHHHHHHHCCCC
Q ss_conf             56878999469857999999999968998245158765--4--67899999876515886
Q gi|254780579|r   35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH--S--VSKDILLQKIPIRQDLA   90 (207)
Q Consensus        35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~--~--~~~~~~~~~~~~~~~i~   90 (207)
                      ....-++|+|||.-=++.|..|.+.|....++..+..-  .  ..-.+.....+.+.|+.
T Consensus        17 ~~~k~vvIiGgG~ig~E~a~~l~~~g~~vtlv~~~~~i~~~~d~~~~~~~~~~l~~~gV~   76 (115)
T 1ebd_A           17 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVE   76 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             HCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf             669978999997148889999963595550000366334455789999999998626849


No 190
>>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} (A:187-356)
Probab=20.59  E-value=52  Score=13.36  Aligned_cols=110  Identities=12%  Similarity=0.010  Sum_probs=61.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE-----C-CCCCC--CHH------
Q ss_conf             899946985799999999996899824515876546789999987651588613322-----0-46666--602------
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID-----I-GYKAL--NTE------  104 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~-----~-e~~s~--~T~------  104 (207)
                      ......+..+.+++++++.++...|.|++.++.......+..+++....+++-....     + +....  .++      
T Consensus         9 ~~~~~~~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~~~pv~~t~~~kg~~~~~~p~~~G~~~~~~~G   88 (170)
T 2iht_A            9 VGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYXDG   88 (170)
T ss_dssp             BEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             34421000567899999998564652013212234323799999999979898973146654357852455443330113


Q ss_pred             -HHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             -5699999999864998189851---1442199999999862998799964167
Q gi|254780579|r  105 -GNAQEASAWAEKNNFHHVLIVT---HDYHMPRTFLELQRINSTVQFIPYPIIS  154 (207)
Q Consensus       105 -ena~~~~~~l~~~~~~~iiLVT---s~yHm~RA~~~f~~~~p~i~i~~~pv~~  154 (207)
                       -....+.+.+++-+  -++.+=   +.+++...    ....++.+++......
T Consensus        89 ~~~~~~~~~~l~~aD--lil~iG~~~~~~~~~~~----~~~~~~~~~i~i~~d~  136 (170)
T 2iht_A           89 ILNFPALQTXFAPVD--LVLTVGYDYAEDLRPSX----WQKGIEKKTVRISPTV  136 (170)
T ss_dssp             HHTSCHHHHHHTTCC--EEEEETCCGGGCCCHHH----HCCSSCCEEEEEESSC
T ss_pred             CCCCHHHHHHHCCCC--CEEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCC
T ss_conf             322478998734434--30000245312466542----2245532100012223


No 191
>>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8} (A:58-227)
Probab=20.59  E-value=52  Score=13.36  Aligned_cols=113  Identities=16%  Similarity=0.051  Sum_probs=56.5

Q ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHHHHHCCC------------CCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECC
Q ss_conf             654568789994698-5799999999996899------------824-51587654678999998765158861332204
Q gi|254780579|r   32 PDHPSVSAIVVLTGE-PIRIERAFELLENQIG------------EKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIG   97 (207)
Q Consensus        32 ~~~~~~DaIVVLgGg-~~Ri~~a~~L~~~g~~------------~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e   97 (207)
                      ...++.|.||++|=| ..=-..++.-.-++..            +++ +.+..+     .......+......+.-++.-
T Consensus        16 ~~i~~~~~vv~iG~GgS~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~d-----~~~~~~~l~~l~~~~tl~i~i   90 (170)
T 2q8n_A           16 DWIINFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVD-----PDLMSSVLDRIDPKTTLFNVI   90 (170)
T ss_dssp             HHHTTCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSCTTTTTTCCEEEEECSCC-----HHHHHHHHTTCCGGGEEEEEE
T ss_pred             HHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCC-----HHHHHHHHHCCCCCCEEEEEE
T ss_conf             997289989998314188999999999633210112245405885599980889-----899999970037534189996


Q ss_pred             CCCCCHHH---HHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             66666025---69999999986499---818985114421999999998629987999641
Q gi|254780579|r   98 YKALNTEG---NAQEASAWAEKNNF---HHVLIVTHDYHMPRTFLELQRINSTVQFIPYPI  152 (207)
Q Consensus        98 ~~s~~T~e---na~~~~~~l~~~~~---~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv  152 (207)
                      .+|-+|.|   |++..++++++.+.   ++++.||++--..-+... ++.  +......|.
T Consensus        91 SkSG~T~Etl~~~~~~~~~~~~~~~~~~~~~v~iT~~~~~~~~~~~-~~~--~~~~~~~~~  148 (170)
T 2q8n_A           91 SKSGSTAEVMATYSIARGILEAYGLDPREHMLITTDPEKGFLRKLV-KEE--GFRSLEVPP  148 (170)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEECSSSSHHHHHH-HHH--TCEEEECCT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH-HHH--HHHHHHCCC
T ss_conf             5888736799889999999997386477778871353157777677-887--577763355


No 192
>>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} (A:184-247)
Probab=20.56  E-value=52  Score=13.36  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=37.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC----CCCHHHHHHHHHHHCCC
Q ss_conf             878999469857999999999968998245158765----46789999987651588
Q gi|254780579|r   37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH----SVSKDILLQKIPIRQDL   89 (207)
Q Consensus        37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~----~~~~~~~~~~~~~~~~i   89 (207)
                      +.-++|.|||.-=++.|-.|.+.|..-.++-.+...    .....+...+.+.+.|+
T Consensus         2 pk~v~ViG~G~iGlE~A~~l~~~g~~Vtiie~~~~il~~~d~~~~~~~~~~l~~~gv   58 (64)
T 2hqm_A            2 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGI   58 (64)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             767999898878999999999649842553001244433303443345554442010


No 193
>>2wjw_A Glutamate receptor 2; transport protein, postsynaptic cell membrane, GLUR2, synapse, membrane, palmitate, synaptic plasticity, alternative splicing; HET: NAG; 1.80A {Homo sapiens} PDB: 2wjx_A 3h5v_A* 3h5w_A (A:107-241,A:343-388)
Probab=20.38  E-value=52  Score=13.34  Aligned_cols=89  Identities=9%  Similarity=0.045  Sum_probs=62.2

Q ss_pred             HHHHH-HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf             99999-68998245158765467899999876515886133220-46666602569999999986499818985114421
Q gi|254780579|r   54 FELLE-NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDI-GYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHM  131 (207)
Q Consensus        54 ~~L~~-~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~-e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm  131 (207)
                      ++|.+ -++....++...+.+....+.+...+...++.-..... .....++.++.....+-+++.+.+.+++.++...+
T Consensus         7 ~~LL~~f~W~~v~vIyd~d~g~~~l~~l~~~~~~~~i~V~~~~~~~~~~~~~~~~~~~~L~~i~~s~~rvIIl~~~~~~~   86 (181)
T 2wjw_A            7 LSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKV   86 (181)
T ss_dssp             HHHHHHTTCCEEEEEECTTSCSHHHHHHHHHHHHHTCEEEEEECCCCCSSTHHHHTHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf             99999849967999981452222477899999970884999997435787417789999998660588589998056898


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999862
Q gi|254780579|r  132 PRTFLELQRIN  142 (207)
Q Consensus       132 ~RA~~~f~~~~  142 (207)
                      ++-+.......
T Consensus        87 ~~iL~~a~~~g   97 (181)
T 2wjw_A           87 NDIVDQVITIG   97 (181)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHC
T ss_conf             88899999847


No 194
>>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open active site loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* (A:199-361)
Probab=20.32  E-value=53  Score=13.33  Aligned_cols=80  Identities=8%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEE-----CCCCC---CCHH-H--HHHHHHHH
Q ss_conf             985799999999996899824515876546789999987651588613322-----04666---6602-5--69999999
Q gi|254780579|r   45 GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCID-----IGYKA---LNTE-G--NAQEASAW  113 (207)
Q Consensus        45 Gg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~-----~e~~s---~~T~-e--na~~~~~~  113 (207)
                      +..+.++.++++.++...|.|++.++.......+..+.+....+++-..-.     +++..   ..++ .  .-...++.
T Consensus         9 ~~~~~i~~~~~~L~~A~rPvii~G~~~~~~~a~~~l~~lae~~g~pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~   88 (163)
T 2nxw_A            9 ALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRL   88 (163)
T ss_dssp             HHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf             36899999999987501122210011344333431000023334322334210011235530000112565431111012


Q ss_pred             HHHCCCCEEEEEC
Q ss_conf             9864998189851
Q gi|254780579|r  114 AEKNNFHHVLIVT  126 (207)
Q Consensus       114 l~~~~~~~iiLVT  126 (207)
                      +++-+  =++.+=
T Consensus        89 ~~~aD--lvl~iG   99 (163)
T 2nxw_A           89 VEESD--GLFLLG   99 (163)
T ss_dssp             HHTCS--EEEEES
T ss_pred             CCCCC--CCEEEC
T ss_conf             45565--213653


No 195
>>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:1-93)
Probab=20.21  E-value=53  Score=13.31  Aligned_cols=34  Identities=15%  Similarity=0.115  Sum_probs=22.1

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCCEEC
Q ss_conf             545687899946985799999999996-89982451
Q gi|254780579|r   33 DHPSVSAIVVLTGEPIRIERAFELLEN-QIGEKIFI   67 (207)
Q Consensus        33 ~~~~~DaIVVLgGg~~Ri~~a~~L~~~-g~~~~ii~   67 (207)
                      ....+|.|||+||+ +-+..|++.+.. ...++++-
T Consensus        32 ~~~~~D~vi~iGGD-GT~L~a~~~~~~~~~~~pv~g   66 (93)
T 2i2c_A           32 DDVEPEIVISIGGD-GTFLSAFHQYEERLDEIAFIG   66 (93)
T ss_dssp             CSSSCSEEEEEESH-HHHHHHHHHTGGGTTTCEEEE
T ss_pred             CCCCCCEEEEECCH-HHHHHHHHHHHHCCCCCEEEE
T ss_conf             78899899998972-999999998655158974998


No 196
>>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* (A:)
Probab=20.07  E-value=53  Score=13.30  Aligned_cols=30  Identities=10%  Similarity=0.160  Sum_probs=25.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             899946985799999999996899824515
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      =++|.|||..=+..|..|.++|....++=.
T Consensus        41 ~VvVIGaG~aGL~AA~~L~~~G~~V~vlE~   70 (495)
T 2vvm_A           41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEA   70 (495)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             489989589999999999868998899925


No 197
>>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:244-449)
Probab=20.03  E-value=53  Score=13.29  Aligned_cols=90  Identities=6%  Similarity=-0.173  Sum_probs=49.7

Q ss_pred             CCCCEEEEECCCHHH--HH-HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHH
Q ss_conf             568789994698579--99-999999968998245158765467899999876515886133220466666025699999
Q gi|254780579|r   35 PSVSAIVVLTGEPIR--IE-RAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEAS  111 (207)
Q Consensus        35 ~~~DaIVVLgGg~~R--i~-~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~  111 (207)
                      .+++-|.+.|-|..-  .. .+..|.+.|.....+..+        ..+..... .--+++.++.-..|..|. +...+.
T Consensus        47 ~~a~~I~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~--------~~~~~~~~-~~~~~dlvI~iS~sG~t~-~~~~~~  116 (206)
T 2bpl_A           47 SKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIA--------SEFRYRKS-AVRRNSLMITLSQSGETA-DTLAGL  116 (206)
T ss_dssp             HHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEEEEH--------HHHTTSCC-CCCTTEEEEEEESSSCCH-HHHHHH
T ss_pred             HHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC--------CCCCCCCC-CCCCCCEEEEECCCCCHH-HHHHHH
T ss_conf             32113589985654778999999999970987499974--------01311245-568985899973788738-899999


Q ss_pred             HHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             99986499818985114421999
Q gi|254780579|r  112 AWAEKNNFHHVLIVTHDYHMPRT  134 (207)
Q Consensus       112 ~~l~~~~~~~iiLVTs~yHm~RA  134 (207)
                      +.+++.|...++++|+..+.+=+
T Consensus       117 ~~ak~~g~~~vi~iT~~~~s~l~  139 (206)
T 2bpl_A          117 RLSKELGYLGSLAICNVPGSSLV  139 (206)
T ss_dssp             HHHHHTTCSEEEEEESSTTCHHH
T ss_pred             HHHHHCCCCEEEEEECCCCCHHH
T ss_conf             98875387559999746997787


No 198
>>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} (A:1-131,A:255-332)
Probab=20.03  E-value=53  Score=13.29  Aligned_cols=30  Identities=10%  Similarity=0.097  Sum_probs=24.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             899946985799999999996899824515
Q gi|254780579|r   39 AIVVLTGEPIRIERAFELLENQIGEKIFIS   68 (207)
Q Consensus        39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S   68 (207)
                      -|||+|||.-=+..|.+|-+.++.-.|.+-
T Consensus         5 kIvIIGaG~aG~~aA~~lr~~~~~~~Itvi   34 (209)
T 3iwa_A            5 HVVVIGAVALGPKAACRFKRLDPEAHVTMI   34 (209)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             999989889999999999807989838999


Done!