HHsearch results for GI: 254780579 and protein with PDBid: 3ca8_A
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12}
Probab=99.95 E-value=1.2e-25 Score=175.46 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=122.0
Q ss_pred CCCCCCCCCEEEEECCC-HHHHHHHHHHHHHCCCCCEECCCCC---------------------CCCCHHHHHHHHHHHC
Q ss_conf 67654568789994698-5799999999996899824515876---------------------5467899999876515
Q gi|254780579|r 30 HIPDHPSVSAIVVLTGE-PIRIERAFELLENQIGEKIFISGVH---------------------HSVSKDILLQKIPIRQ 87 (207)
Q Consensus 30 ~~~~~~~~DaIVVLgGg-~~Ri~~a~~L~~~g~~~~ii~SG~~---------------------~~~~~~~~~~~~~~~~ 87 (207)
....+.++|+||||||+ ..|.+.|++||++|.++.|+.+|.+ .+.+|+++++.++.+.
T Consensus 30 ~~~~p~~aD~IVvlG~~~l~~~~~A~~L~~~g~a~liisGG~G~~T~~l~~~i~~~~~~~~i~~~g~sEAe~~a~~a~~~ 109 (266)
T 3ca8_A 30 SGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQF 109 (266)
T ss_dssp TTTCCCCCSEEEEESCCCHHHHHHHHHHHHHHTCCEEEECCSSTTHHHHHHHHHTCTTGGGSCCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 66788899989988998218999999999805998897369875531456554306544556778988999999999997
Q ss_pred -CCCHHHEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHHHHCCC----CEEEEEECCCCCC---
Q ss_conf -8861332204666660256999999998649--98189851144219999999986299----8799964167666---
Q gi|254780579|r 88 -DLAECCIDIGYKALNTEGNAQEASAWAEKNN--FHHVLIVTHDYHMPRTFLELQRINST----VQFIPYPIISHDL--- 157 (207)
Q Consensus 88 -~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~--~~~iiLVTs~yHm~RA~~~f~~~~p~----i~i~~~pv~~~~~--- 157 (207)
|+++++|++|++|+||.|||.++++++++++ +++++||||+|||+||.++|++..++ .++..+|+.....
T Consensus 110 ~GVp~~~Il~E~~S~NT~eNa~~s~~lL~~~~~~~~siilV~~p~h~rRa~atf~k~~~~~~~~~~~~s~p~~~~~~~~~ 189 (266)
T 3ca8_A 110 WHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNN 189 (266)
T ss_dssp TCCCGGGEEEECCCCSHHHHHHHHHHHHHTCSSCCSCEEEECCTTTHHHHHHHHHHHHCCCTTSCSEEECCSSCCCEEEE
T ss_pred CCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 49999996646777778999999999999639998779998988999999999999747777775220378731489853
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHH
Q ss_conf --------754211698999999999999
Q gi|254780579|r 158 --------EENSSIFKIKILRVLLIEYLK 178 (207)
Q Consensus 158 --------~~~~Ww~~~~~~~~~~~Ey~K 178 (207)
.....|.-...+..++.|+-.
T Consensus 190 ~~~~~~~~~~~~~w~~~r~i~~l~Ge~~R 218 (266)
T 3ca8_A 190 ADSVIFINQLQGLWPVERYLSLLTGELPR 218 (266)
T ss_dssp TTEEEESSCCTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf 88720066643437798999999620665