Query gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 207
No_of_seqs 147 out of 1321
Neff 7.2
Searched_HMMs 23785
Date Tue May 31 18:37:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780579.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ca8_A Protein YDCF; two domai 99.9 1.2E-25 5.1E-30 175.5 19.5 149 30-178 30-218 (266)
2 1rcu_A Conserved hypothetical 92.1 0.35 1.5E-05 25.7 6.1 20 52-74 50-69 (195)
3 2q8n_A Glucose-6-phosphate iso 88.1 1.2 5.2E-05 22.4 10.2 109 35-151 76-204 (460)
4 3evn_A Oxidoreductase, GFO/IDH 83.2 2.2 9.1E-05 20.9 10.4 121 76-202 80-205 (329)
5 1zzg_A Glucose-6-phosphate iso 81.1 2.6 0.00011 20.4 9.8 107 35-152 64-182 (415)
6 3ff1_A Glucose-6-phosphate iso 79.4 2.9 0.00012 20.1 6.7 110 36-151 75-199 (446)
7 1m3s_A Hypothetical protein YC 78.9 3.1 0.00013 20.0 7.4 56 91-155 80-135 (186)
8 1b0z_A Protein (phosphoglucose 78.1 3.2 0.00014 19.8 8.0 110 36-151 71-196 (445)
9 1wek_A Hypothetical protein TT 75.3 3.9 0.00016 19.3 4.8 84 38-138 38-130 (217)
10 1vim_A Hypothetical protein AF 75.1 3.9 0.00016 19.3 7.7 56 90-154 89-144 (200)
11 3i23_A Oxidoreductase, GFO/IDH 74.3 4.1 0.00017 19.2 10.1 113 72-190 74-189 (349)
12 2hsg_A Glucose-resistance amyl 72.1 4.6 0.00019 18.9 10.4 96 54-150 170-274 (332)
13 3ljk_A Glucose-6-phosphate iso 69.2 5.4 0.00023 18.5 7.5 108 21-133 122-245 (543)
14 1t35_A Hypothetical protein YV 68.9 5.4 0.00023 18.4 6.6 16 121-136 79-94 (191)
15 3hcw_A Maltose operon transcri 68.8 5.5 0.00023 18.4 8.4 97 54-150 124-227 (295)
16 3kux_A Putative oxidoreductase 68.6 5.5 0.00023 18.4 10.3 64 73-142 77-140 (352)
17 2fep_A Catabolite control prot 62.7 7.2 0.0003 17.7 12.0 98 54-151 126-231 (289)
18 2d13_A Hypothetical protein PH 60.0 8 0.00034 17.4 8.0 103 36-141 4-115 (227)
19 2a33_A Hypothetical protein; s 59.3 8.2 0.00035 17.3 6.1 18 98-115 117-134 (215)
20 2ehj_A Uracil phosphoribosyltr 58.9 8.4 0.00035 17.3 5.8 66 89-155 121-186 (208)
21 1jeo_A MJ1247, hypothetical pr 54.1 10 0.00042 16.8 6.8 58 91-158 83-140 (180)
22 1mo9_A ORF3; nucleotide bindin 52.9 11 0.00044 16.7 4.6 38 30-68 37-74 (523)
23 3fxa_A SIS domain protein; YP_ 52.0 11 0.00046 16.6 7.0 44 90-135 92-135 (201)
24 1v9s_A Uracil phosphoribosyltr 50.2 12 0.00049 16.4 6.5 67 88-155 120-186 (208)
25 1ydh_A AT5G11950; structural g 49.3 12 0.0005 16.3 5.9 32 94-125 109-141 (216)
26 1i5e_A Uracil phosphoribosyltr 47.6 13 0.00054 16.2 6.5 66 89-155 122-187 (209)
27 2afr_A Cobalamin biosynthesis 47.4 13 0.00054 16.2 5.2 68 37-105 133-206 (231)
28 3a2k_A TRNA(Ile)-lysidine synt 47.2 8.2 0.00035 17.3 2.1 96 37-135 19-133 (464)
29 2rgy_A Transcriptional regulat 46.0 13 0.00057 16.0 11.4 131 54-187 121-262 (290)
30 3m0z_A Putative aldolase; MCSG 45.0 14 0.00059 15.9 5.0 68 49-121 146-215 (249)
31 3gh1_A Predicted nucleotide-bi 44.7 14 0.00059 15.9 6.4 43 36-78 146-192 (462)
32 1o5o_A Uracil phosphoribosyltr 43.7 15 0.00061 15.8 6.8 114 39-155 86-199 (221)
33 2a67_A Isochorismatase family 42.8 15 0.00063 15.7 3.0 96 48-150 31-132 (167)
34 1f2v_A COBH, precorrin-8X meth 42.0 16 0.00065 15.6 5.9 66 37-104 138-206 (219)
35 1weh_A Conserved hypothetical 42.0 16 0.00065 15.6 3.6 20 119-138 77-96 (171)
36 3db2_A Putative NADPH-dependen 41.8 16 0.00066 15.6 9.3 98 36-141 29-138 (354)
37 1v77_A PH1877P, hypothetical p 41.0 16 0.00068 15.5 6.1 91 36-132 75-172 (212)
38 3bq9_A Predicted rossmann fold 40.8 16 0.00068 15.5 7.3 43 36-81 144-193 (460)
39 1vp8_A Hypothetical protein AF 40.1 17 0.0007 15.5 8.0 70 97-169 22-91 (201)
40 3nlc_A Uncharacterized protein 39.9 17 0.00071 15.4 4.9 31 39-69 109-139 (549)
41 1y56_B Sarcosine oxidase; dehy 37.8 18 0.00076 15.2 4.3 32 34-66 3-34 (382)
42 3e18_A Oxidoreductase; dehydro 36.7 19 0.00079 15.1 9.5 110 75-190 77-191 (359)
43 1qpz_A PURA, protein (purine n 36.2 19 0.00081 15.1 13.2 98 52-151 168-274 (340)
44 3hjb_A Glucose-6-phosphate iso 36.2 19 0.00081 15.1 6.9 93 32-131 167-274 (574)
45 1s3e_A Amine oxidase [flavin-c 35.1 20 0.00084 15.0 4.1 31 35-66 3-33 (520)
46 2bi7_A UDP-galactopyranose mut 35.1 20 0.00084 15.0 2.7 29 39-67 5-33 (384)
47 1eiw_A Hypothetical protein MT 34.9 20 0.00085 15.0 3.6 36 32-67 34-73 (111)
48 3e9m_A Oxidoreductase, GFO/IDH 34.9 20 0.00085 14.9 11.3 112 72-189 76-192 (330)
49 3jvd_A Transcriptional regulat 33.5 21 0.00089 14.8 7.4 94 53-150 166-266 (333)
50 3o9z_A Lipopolysaccaride biosy 33.5 21 0.00089 14.8 11.4 120 63-190 74-198 (312)
51 3moi_A Probable dehydrogenase; 33.0 22 0.00091 14.8 8.9 146 37-190 28-192 (387)
52 2p2s_A Putative oxidoreductase 32.0 22 0.00094 14.7 13.1 115 72-190 75-194 (336)
53 3egc_A Putative ribose operon 31.6 23 0.00096 14.6 9.5 100 51-151 115-222 (291)
54 2i2w_A Phosphoheptose isomeras 30.8 24 0.00099 14.5 3.7 50 77-127 118-167 (212)
55 3lr0_A Sensor protein; niaid, 30.7 18 0.00074 15.3 1.6 83 94-194 26-108 (143)
56 3m6y_A 4-hydroxy-2-oxoglutarat 30.6 24 0.001 14.5 5.0 10 164-173 255-264 (275)
57 2q7v_A Thioredoxin reductase; 30.6 24 0.001 14.5 3.9 29 37-66 9-37 (325)
58 3etn_A Putative phosphosugar i 30.3 24 0.001 14.5 7.6 98 49-154 43-163 (220)
59 1h6d_A Precursor form of gluco 30.3 24 0.001 14.5 8.5 60 75-140 162-221 (433)
60 1v9c_A Precorrin-8X methyl mut 30.2 24 0.001 14.5 4.1 22 39-60 129-150 (218)
61 1w5c_T Cytochrome C-550; photo 29.3 7.1 0.0003 17.7 -0.6 19 44-62 46-64 (163)
62 3gdo_A Uncharacterized oxidore 29.3 25 0.001 14.4 12.0 63 72-140 74-136 (358)
63 2wu8_A Glucose-6-phosphate iso 28.2 26 0.0011 14.3 7.1 106 21-131 125-245 (549)
64 3bbl_A Regulatory protein of L 28.0 26 0.0011 14.2 7.2 95 55-150 119-223 (287)
65 1zh8_A Oxidoreductase; TM0312, 26.1 28 0.0012 14.0 8.5 62 74-141 93-154 (340)
66 3e7d_A COBH, precorrin-8X meth 26.1 28 0.0012 14.0 5.9 41 37-77 131-171 (212)
67 3g85_A Transcriptional regulat 26.0 29 0.0012 14.0 7.4 95 54-151 120-224 (289)
68 3jy6_A Transcriptional regulat 25.4 29 0.0012 14.0 8.5 33 109-141 171-203 (276)
69 2v4u_A CTP synthase 2; pyrimid 25.4 29 0.0012 14.0 4.1 36 34-69 88-127 (289)
70 3brq_A HTH-type transcriptiona 25.0 30 0.0013 13.9 13.0 101 50-151 128-236 (296)
71 3lqy_A Putative isochorismatas 24.9 30 0.0013 13.9 3.7 106 49-155 39-151 (190)
72 1fl2_A Alkyl hydroperoxide red 24.9 30 0.0013 13.9 3.3 27 40-66 4-30 (310)
73 2pfu_A Biopolymer transport EX 24.6 30 0.0013 13.9 3.8 42 87-128 53-94 (99)
74 3dk5_A Bifunctional protein GL 24.4 31 0.0013 13.8 6.2 108 39-152 8-144 (495)
75 3btv_A Galactose/lactose metab 24.2 31 0.0013 13.8 7.9 36 92-129 120-155 (438)
76 1i8t_A UDP-galactopyranose mut 24.0 31 0.0013 13.8 3.1 29 40-68 4-32 (367)
77 2weu_A Tryptophan 5-halogenase 23.9 31 0.0013 13.8 3.0 30 39-68 4-36 (511)
78 2ivd_A PPO, PPOX, protoporphyr 23.4 32 0.0013 13.7 3.4 26 37-63 17-42 (478)
79 3en0_A Cyanophycinase; serine 23.4 32 0.0013 13.7 5.8 90 39-134 28-127 (291)
80 3fhl_A Putative oxidoreductase 23.2 32 0.0014 13.7 11.0 65 72-142 74-138 (362)
81 3euw_A MYO-inositol dehydrogen 22.8 33 0.0014 13.6 9.4 61 75-141 77-137 (344)
82 2gqw_A Ferredoxin reductase; f 22.7 33 0.0014 13.6 4.9 34 35-69 6-40 (408)
83 3nyc_A D-arginine dehydrogenas 22.5 33 0.0014 13.6 2.8 28 32-60 5-32 (381)
84 2h0a_A TTHA0807, transcription 22.5 33 0.0014 13.6 8.3 98 52-150 104-215 (276)
85 2zxi_A TRNA uridine 5-carboxym 22.4 34 0.0014 13.6 4.2 33 35-68 26-58 (637)
86 3hqn_D Pyruvate kinase, PK; TI 22.3 34 0.0014 13.6 6.8 32 108-139 383-414 (499)
87 2e55_A Uracil phosphoribosyltr 21.9 34 0.0014 13.5 6.6 113 39-155 72-184 (208)
88 3e3m_A Transcriptional regulat 21.1 36 0.0015 13.4 10.8 98 53-150 179-285 (355)
89 2vvm_A Monoamine oxidase N; FA 20.7 36 0.0015 13.4 4.5 27 40-66 42-68 (495)
90 3nrn_A Uncharacterized protein 20.5 37 0.0015 13.4 3.3 19 42-60 5-23 (421)
No 1
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12}
Probab=99.95 E-value=1.2e-25 Score=175.46 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=122.0
Q ss_pred CCCCCCCCCEEEEECCC-HHHHHHHHHHHHHCCCCCEECCCCC---------------------CCCCHHHHHHHHHHHC
Q ss_conf 67654568789994698-5799999999996899824515876---------------------5467899999876515
Q gi|254780579|r 30 HIPDHPSVSAIVVLTGE-PIRIERAFELLENQIGEKIFISGVH---------------------HSVSKDILLQKIPIRQ 87 (207)
Q Consensus 30 ~~~~~~~~DaIVVLgGg-~~Ri~~a~~L~~~g~~~~ii~SG~~---------------------~~~~~~~~~~~~~~~~ 87 (207)
....+.++|+||||||+ ..|.+.|++||++|.++.|+.+|.+ .+.+|+++++.++.+.
T Consensus 30 ~~~~p~~aD~IVvlG~~~l~~~~~A~~L~~~g~a~liisGG~G~~T~~l~~~i~~~~~~~~i~~~g~sEAe~~a~~a~~~ 109 (266)
T 3ca8_A 30 SGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQF 109 (266)
T ss_dssp TTTCCCCCSEEEEESCCCHHHHHHHHHHHHHHTCCEEEECCSSTTHHHHHHHHHTCTTGGGSCCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 66788899989988998218999999999805998897369875531456554306544556778988999999999997
Q ss_pred -CCCHHHEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHHHHCCC----CEEEEEECCCCCC---
Q ss_conf -8861332204666660256999999998649--98189851144219999999986299----8799964167666---
Q gi|254780579|r 88 -DLAECCIDIGYKALNTEGNAQEASAWAEKNN--FHHVLIVTHDYHMPRTFLELQRINST----VQFIPYPIISHDL--- 157 (207)
Q Consensus 88 -~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~--~~~iiLVTs~yHm~RA~~~f~~~~p~----i~i~~~pv~~~~~--- 157 (207)
|+++++|++|++|+||.|||.++++++++++ +++++||||+|||+||.++|++..++ .++..+|+.....
T Consensus 110 ~GVp~~~Il~E~~S~NT~eNa~~s~~lL~~~~~~~~siilV~~p~h~rRa~atf~k~~~~~~~~~~~~s~p~~~~~~~~~ 189 (266)
T 3ca8_A 110 WHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNN 189 (266)
T ss_dssp TCCCGGGEEEECCCCSHHHHHHHHHHHHHTCSSCCSCEEEECCTTTHHHHHHHHHHHHCCCTTSCSEEECCSSCCCEEEE
T ss_pred CCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 49999996646777778999999999999639998779998988999999999999747777775220378731489853
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHH
Q ss_conf --------754211698999999999999
Q gi|254780579|r 158 --------EENSSIFKIKILRVLLIEYLK 178 (207)
Q Consensus 158 --------~~~~Ww~~~~~~~~~~~Ey~K 178 (207)
.....|.-...+..++.|+-.
T Consensus 190 ~~~~~~~~~~~~~w~~~r~i~~l~Ge~~R 218 (266)
T 3ca8_A 190 ADSVIFINQLQGLWPVERYLSLLTGELPR 218 (266)
T ss_dssp TTEEEESSCCTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf 88720066643437798999999620665
No 2
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=92.14 E-value=0.35 Score=25.75 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=11.4
Q ss_pred HHHHHHHHCCCCCEECCCCCCCC
Q ss_conf 99999996899824515876546
Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSV 74 (207)
Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~ 74 (207)
-|-.|.++|+ ++++|++++.
T Consensus 50 lG~~La~~G~---~V~~GG~~Gl 69 (195)
T 1rcu_A 50 LGRTLAKKGY---LVFNGGRDGV 69 (195)
T ss_dssp HHHHHHHTTC---EEEECCSSHH
T ss_pred HHHHHHHCCC---EEECCCHHHH
T ss_conf 9999998799---9994872748
No 3
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=88.08 E-value=1.2 Score=22.35 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCCCEEEEEC-CCHH---H-HHHHHHHH--------HHCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCC
Q ss_conf 5687899946-9857---9-99999999--------96899824-51587654678999998765158861332204666
Q gi|254780579|r 35 PSVSAIVVLT-GEPI---R-IERAFELL--------ENQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKA 100 (207)
Q Consensus 35 ~~~DaIVVLg-Gg~~---R-i~~a~~L~--------~~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s 100 (207)
++.|.|||+| ||.. | +.++++=+ .....+++ +++..++ +.....+......+..+++-.+|
T Consensus 76 ~~f~~vv~iGIGGS~LGp~al~~aL~~~~~~~~~~~~~~~~~~i~f~dNiDp-----~~i~~~l~~ld~~~TlfiviSKS 150 (460)
T 2q8n_A 76 INFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDP-----DLMSSVLDRIDPKTTLFNVISKS 150 (460)
T ss_dssp TTCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSCTTTTTTCCEEEEECSCCH-----HHHHHHHTTCCGGGEEEEEECSS
T ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCH-----HHHHHHHHCCCCCCEEEEEECCC
T ss_conf 4899799984200889999999995122111011333068854999938899-----99999995389552799998699
Q ss_pred CCHHH---HHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 66025---69999999986499---81898511442199999999862998799964
Q gi|254780579|r 101 LNTEG---NAQEASAWAEKNNF---HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207)
Q Consensus 101 ~~T~e---na~~~~~~l~~~~~---~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207)
-+|.| |+...++|+++.+. ++++++|++ .-..-....++. ++.+...|
T Consensus 151 GtT~ETl~n~~~~~~~l~~~~~~~~~~~~v~t~~-~~~~l~~~a~~~--~~~~f~~~ 204 (460)
T 2q8n_A 151 GSTAEVMATYSIARGILEAYGLDPREHMLITTDP-EKGFLRKLVKEE--GFRSLEVP 204 (460)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEECS-SSSHHHHHHHHH--TCEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHH--HHHHHCCC
T ss_conf 8988999999999999997388656554433143-167887566886--44440488
No 4
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V}
Probab=83.20 E-value=2.2 Score=20.87 Aligned_cols=121 Identities=10% Similarity=-0.040 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-----CCCEEEEE
Q ss_conf 8999998765158861332204666660256999999998649981898511442199999999862-----99879996
Q gi|254780579|r 76 KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRIN-----STVQFIPY 150 (207)
Q Consensus 76 ~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~-----p~i~i~~~ 150 (207)
..++.+..+ +.|. -|.+|.--..+.+++....+..++.|..-.+-....|| + +...+++.. .++.-+.+
T Consensus 80 H~~~~~~al-~~gk---~vl~EKP~a~~~~e~~~l~~~~~~~~~~~~v~~~~r~~-p-~~~~~k~~i~~g~iG~i~~i~~ 153 (329)
T 3evn_A 80 HYKVAKAAL-LAGK---HVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFI-P-MTQVIKKLLASGEIGEVISISS 153 (329)
T ss_dssp HHHHHHHHH-HTTC---EEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSS-H-HHHHHHHHHHTTTTCSEEEEEE
T ss_pred HHHHHHHHH-HCCC---EEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC-C-CHHHHHHHHHCCCCCCCCCCCC
T ss_conf 557789999-8799---89997245455899865444553135420343102468-7-1366666765499786410121
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4167666754211698999999999999999999876055676654110174
Q gi|254780579|r 151 PIISHDLEENSSIFKIKILRVLLIEYLKILLLSIQLSLSTQTASQFFITLIE 202 (207)
Q Consensus 151 pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K~l~~~lr~~i~~~~~~~~~~~~~~ 202 (207)
-..........|+.+++.---.+.+..=..++.++.-++.....-......+
T Consensus 154 ~~~~~~~~~~~w~~~~~~~gg~~~d~g~H~id~~~~l~G~~~~~v~~~~~~~ 205 (329)
T 3evn_A 154 TTAYPNIDHVTWFRELELGGGTVHFMAPYALSYLQYLFDATITHASGTATFP 205 (329)
T ss_dssp EEECTTGGGSTTTTCGGGTCSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred CCCCCCCCCCCEEEEHHHCCCCCCCEEECHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 1246755641012103206873311533489999997299808999999838
No 5
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus HB8}
Probab=81.12 E-value=2.6 Score=20.40 Aligned_cols=107 Identities=14% Similarity=0.218 Sum_probs=61.0
Q ss_pred CCCCEEEEEC-CCHH---HHHHHHHHHHHCCCCCE-ECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH-
Q ss_conf 5687899946-9857---99999999996899824-5158765467899999876515886133220466666025699-
Q gi|254780579|r 35 PSVSAIVVLT-GEPI---RIERAFELLENQIGEKI-FISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQ- 108 (207)
Q Consensus 35 ~~~DaIVVLg-Gg~~---Ri~~a~~L~~~g~~~~i-i~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~- 108 (207)
+..+.|||+| ||.. |... +.++. ..+++ +++..+ .. .....+......+..+++-.+|-+|.|-+.
T Consensus 64 ~~~~~vV~iGIGGS~LG~~al~--~al~~-~~~~~~f~~n~d----~~-~~~~~l~~l~~~~tl~iviSKSg~T~Et~~~ 135 (415)
T 1zzg_A 64 PWVEDFVLIGIGGSALGPKALE--AAFNE-SGVRFHYLDHVE----PE-PILRLLRTLDPRKTLVNAVSKSGSTAETLAG 135 (415)
T ss_dssp TTCSEEEEECCGGGTHHHHHHH--HHHCC-SCCEEEEECSCC----HH-HHHHHHHHSCGGGEEEEEEESSSCCHHHHHH
T ss_pred CCCCEEEEEEEEHHHHHHHHHH--HHHHC-CCCCEEEECCCC----HH-HHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 6898699996658889999999--99846-797089946899----89-9999996289422799998189898789999
Q ss_pred --HHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf --9999998649----9818985114421999999998629987999641
Q gi|254780579|r 109 --EASAWAEKNN----FHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPI 152 (207)
Q Consensus 109 --~~~~~l~~~~----~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv 152 (207)
..++|++++. -++++.||++-.-...... ++. +.++...|-
T Consensus 136 ~~~~~~~l~~~~~~~~~~~~v~iT~~~~~~l~~~a-~~~--~~~~f~~p~ 182 (415)
T 1zzg_A 136 LAVFLKWLKAHLGEDWRRHLVVTTDPKEGPLRAFA-ERE--GLKAFAIPK 182 (415)
T ss_dssp HHHHHHHHHHHHGGGGGGGEEEEECSSSSHHHHHH-HHH--TCEEEECCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHH-HHC--CCCEEECCC
T ss_conf 99999998752013887655777412089999987-645--742885577
No 6
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Probab=79.43 E-value=2.9 Score=20.06 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=57.4
Q ss_pred CCCEEEEEC-CCHHH-HHHHHHHHH-----HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH---
Q ss_conf 687899946-98579-999999999-----68998245158765467899999876515886133220466666025---
Q gi|254780579|r 36 SVSAIVVLT-GEPIR-IERAFELLE-----NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG--- 105 (207)
Q Consensus 36 ~~DaIVVLg-Gg~~R-i~~a~~L~~-----~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e--- 105 (207)
..|.|||+| ||..= .....+.++ ....+++.+.+..... .............+..+++-.+|-+|.|
T Consensus 75 ~~~~iV~IGIGGS~LGpkal~~aL~~~~~~~~~~~~i~f~~n~~d~---~~~~~l~~~l~~~~t~~iviSKSg~T~ETl~ 151 (446)
T 3ff1_A 75 NSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSS---TYTKELVDYLADKDFSVNVISKSGTTTEPAV 151 (446)
T ss_dssp HCSEEEEECCGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSSCCH---HHHHHHHHHGGGCCEEEEEECSSSCCHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH---HHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
T ss_conf 7988999935087899999999999887511679817985798752---6899999741776755999979989688999
Q ss_pred HHHHHHHHHHHCCC-----CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 69999999986499-----81898511442199999999862998799964
Q gi|254780579|r 106 NAQEASAWAEKNNF-----HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207)
Q Consensus 106 na~~~~~~l~~~~~-----~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207)
|+...++|+++++. +++++||++--..-. ...++. +.++.+.|
T Consensus 152 ~~~~~~~~l~~~~~~~~~~~~~~~iT~~~~~~l~-~~a~~~--~~~~f~~~ 199 (446)
T 3ff1_A 152 AFRLFKQLVEERYGKEEAQKRIFATTDKEKGALK-QLATNE--GYETFIVP 199 (446)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHEEEEECSSCSHHH-HHHHHH--TCEEEECC
T ss_pred HHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHH-HHHHHC--CCCEEECC
T ss_conf 9999999999714735554478997367556799-874301--31155058
No 7
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=78.86 E-value=3.1 Score=19.95 Aligned_cols=56 Identities=14% Similarity=-0.063 Sum_probs=37.3
Q ss_pred HHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 13322046666602569999999986499818985114421999999998629987999641676
Q gi|254780579|r 91 ECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207)
Q Consensus 91 ~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207)
.+.++.-..|.+| .+.....+.++++|. +++.+|+..+.+=|.+ .|..+. .|+.+.
T Consensus 80 ~Dl~I~iS~sG~t-~~~~~~~~~ak~~g~-~ii~IT~~~~s~la~~------ad~~l~-~~~~~~ 135 (186)
T 1m3s_A 80 GDLVIIGSGSGET-KSLIHTAAKAKSLHG-IVAALTINPESSIGKQ------ADLIIR-MPGSPK 135 (186)
T ss_dssp TCEEEEECSSSCC-HHHHHHHHHHHHTTC-EEEEEESCTTSHHHHH------CSEEEE-CSCCSC
T ss_pred CCEEEEECCCCCC-HHHHHHHHHHHHCCC-EEEEEECCCCCHHHHH------CCEEEE-ECCCCC
T ss_conf 9999998389751-469999999998799-5999979999967996------899999-789763
No 8
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=78.12 E-value=3.2 Score=19.82 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=57.6
Q ss_pred CCCEEEEEC-CCHH---H-HHHHHHH--HH-HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH--
Q ss_conf 687899946-9857---9-9999999--99-68998245158765467899999876515886133220466666025--
Q gi|254780579|r 36 SVSAIVVLT-GEPI---R-IERAFEL--LE-NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG-- 105 (207)
Q Consensus 36 ~~DaIVVLg-Gg~~---R-i~~a~~L--~~-~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e-- 105 (207)
..|.||++| ||.. | +.+|+.= .+ .+..+++++.+.+-. ..+ ....+......+..+++-.+|-+|.|
T Consensus 71 ~~~~iV~IGIGGS~LGp~~~~~al~~~~~~~~~~~~~i~f~~~n~D--~~~-~~~~l~~l~~~~t~~iviSKSg~T~ETl 147 (445)
T 1b0z_A 71 HSDALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNIS--STY-ISHLLDVLEGKDLSINVISKSGTTTEPA 147 (445)
T ss_dssp HCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSTTSCEEEEESSSCC--HHH-HHHHHHHHTTCCEEEEEECSSSCCHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC--HHH-HHHHHHHHCCCCCEEEEEECCCCCHHHH
T ss_conf 5988999925076689999999987576652377873798518999--789-9999975076677699998998987899
Q ss_pred -HHHHHHHHHHHCC----C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf -6999999998649----9-81898511442199999999862998799964
Q gi|254780579|r 106 -NAQEASAWAEKNN----F-HHVLIVTHDYHMPRTFLELQRINSTVQFIPYP 151 (207)
Q Consensus 106 -na~~~~~~l~~~~----~-~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~p 151 (207)
|+...++|++++. . ++++++|++--.. .....++. +.+++..|
T Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~~~vit~~~~~~-l~~~a~~~--~~~if~~~ 196 (445)
T 1b0z_A 148 IAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGA-LKKLADQE--GYETFVIP 196 (445)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGEEEEECSSCSH-HHHHHHHH--TCEEEECC
T ss_pred HHHHHHHHHHHHHCCCHHHHHCEEEECCCHHHH-HHHHHHHC--CCCCCCCC
T ss_conf 999999999998538366550646532545778-88654442--33213167
No 9
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=75.35 E-value=3.9 Score=19.35 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=36.5
Q ss_pred CEEEEECCCH-----HHHHHHHH----HHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH
Q ss_conf 7899946985-----79999999----99968998245158765467899999876515886133220466666025699
Q gi|254780579|r 38 SAIVVLTGEP-----IRIERAFE----LLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQ 108 (207)
Q Consensus 38 DaIVVLgGg~-----~Ri~~a~~----L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~ 108 (207)
..|-|.+|+. .-.+.|.+ |.+.|.. +++|++++. -+...+-..+.|-...-|..+.....
T Consensus 38 p~V~Vfcgs~~~~~~~~~~~A~~LG~~LA~~g~~---lV~GGg~Gl--Mgava~ga~~~gG~viGI~~~~~~~~------ 106 (217)
T 1wek_A 38 PLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFG---VVTGGGPGV--MEAVNRGAYEAGGVSVGLNIELPHEQ------ 106 (217)
T ss_dssp CEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCE---EEECSCSHH--HHHHHHHHHHTTCCEEEEEECCTTCC------
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCE---EEECCCHHH--HHHHHHHHHHCCCEEEEEECCCCHHH------
T ss_conf 8299989888998998999999999999987999---997986789--98999999866996999975631021------
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 999999864998189851144219999999
Q gi|254780579|r 109 EASAWAEKNNFHHVLIVTHDYHMPRTFLEL 138 (207)
Q Consensus 109 ~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f 138 (207)
..+...+..++|+..|.|...++-
T Consensus 107 ------~~~~~~~~~i~~~~~~~Rk~~m~~ 130 (217)
T 1wek_A 107 ------KPNPYQTHALSLRYFFVRKVLFVR 130 (217)
T ss_dssp ------CCCSCCSEEEEESCHHHHHHHHHH
T ss_pred ------CCCCCCCEEEECCCHHHHHHHHHH
T ss_conf ------147432215752759999899986
No 10
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=75.11 E-value=3.9 Score=19.31 Aligned_cols=56 Identities=11% Similarity=-0.121 Sum_probs=36.4
Q ss_pred CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 61332204666660256999999998649981898511442199999999862998799964167
Q gi|254780579|r 90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIIS 154 (207)
Q Consensus 90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~ 154 (207)
+++++++-..+..|. +.....+.++++|. ++++||+....+=+ +.+ |+. ...|+..
T Consensus 89 ~~DvvI~iS~sG~t~-~~~~~~~~ak~~g~-~vI~IT~~~~s~L~----~~a--d~~-l~~~~~~ 144 (200)
T 1vim_A 89 DQDVLVGISGSGETT-SVVNISKKAKDIGS-KLVAVTGKRDSSLA----KMA--DVV-MVVKGKM 144 (200)
T ss_dssp TTCEEEEECSSSCCH-HHHHHHHHHHHHTC-EEEEEESCTTSHHH----HHC--SEE-EECCSSC
T ss_pred CCCEEEEECCCCCCC-CHHHHHHHHHHCCC-EEEEEECCCCCHHH----HHC--CEE-EEECCCC
T ss_conf 999899857997742-16999999998799-69999799999789----959--999-9938987
No 11
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=74.33 E-value=4.1 Score=19.19 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC-C--CEEE
Q ss_conf 546789999987651588613322046666602569999999986499818985114421999999998629-9--8799
Q gi|254780579|r 72 HSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINS-T--VQFI 148 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p-~--i~i~ 148 (207)
+.....++.... .+.|.. |.+|+-...|.+++....+..++.|. .+.|.-.++.-.+....++... + -++.
T Consensus 74 p~~~H~~~~~~a-l~agkh---V~~EKP~a~~~~e~~~l~~~~~~~g~--~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~ 147 (349)
T 3i23_A 74 PAHTHYDLAKQA-ILAGKS---VIVEKPFCDTLEHAEELFALGQEKGV--VVMPYQNRRFDGDYLAMKQVVEQGFLGEIN 147 (349)
T ss_dssp CGGGHHHHHHHH-HHTTCE---EEECSCSCSSHHHHHHHHHHHHHTTC--CEEECCGGGGCHHHHHHHHHHHHTTTCSEE
T ss_pred CHHHHHHHHHHH-HHCCCE---EEEECCCCCHHHHCCCHHHHHHHCCC--CCCCCCCEECHHHHHHHHHHHHCCCCCCCC
T ss_conf 714567889999-984991---87517742002210220234542697--543320110037777765654248866311
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 964167666754211698999999999999999999876055
Q gi|254780579|r 149 PYPIISHDLEENSSIFKIKILRVLLIEYLKILLLSIQLSLST 190 (207)
Q Consensus 149 ~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K~l~~~lr~~i~~ 190 (207)
..-.....+.+..|+.....---++.+..-..+..++..+++
T Consensus 148 ~~~~~~~~~~p~~~~~~~~~~gG~~~d~g~H~id~~~~~~g~ 189 (349)
T 3i23_A 148 EVETHIDYYRPGSITEQGPKENGSFYGLGIHLMDRMIALFGR 189 (349)
T ss_dssp EEEEECCCBCTTSCCSCCCGGGSHHHHTHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCC
T ss_conf 000011345774212354456853203257799999997399
No 12
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=72.05 E-value=4.6 Score=18.86 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=57.9
Q ss_pred HHHHHHCCCCCEECCCCCCCCC----HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCH
Q ss_conf 9999968998245158765467----89999987651588613322046666602569-999999986499818985114
Q gi|254780579|r 54 FELLENQIGEKIFISGVHHSVS----KDILLQKIPIRQDLAECCIDIGYKALNTEGNA-QEASAWAEKNNFHHVLIVTHD 128 (207)
Q Consensus 54 ~~L~~~g~~~~ii~SG~~~~~~----~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena-~~~~~~l~~~~~~~iiLVTs~ 128 (207)
-.|.++|+...+++.+..+... ..+-+++.+.+.|++.....+.. ...+.+++ ....++++...--+.++++++
T Consensus 170 ~~l~~~G~~~~~~i~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 248 (332)
T 2hsg_A 170 QSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVE-GDYTYDSGIEAVEKLLEEDEKPTAIFVGTD 248 (332)
T ss_dssp HHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEE-CCSSHHHHHHHHHHHHHSSSCCSEEEESSH
T ss_pred HHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE-CCCCHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 9999759965999965877872499999999999998399988003771-789879999999999836999957997732
Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf 42199999999862---9-9879996
Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPY 150 (207)
Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207)
.....+...++..+ | ++.++.+
T Consensus 249 ~~A~g~~~al~~~g~~iP~di~vvg~ 274 (332)
T 2hsg_A 249 EMALGVIHGAQDRGLNVPNDLEIIGF 274 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHCEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99999999999849999998699997
No 13
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733, cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES; 1.48A {Francisella tularensis} PDB: 3m5p_A*
Probab=69.15 E-value=5.4 Score=18.47 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHHHCCCC--CCCCCCCCEEEEEC-CCHH---H-HHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 9999721346--76545687899946-9857---9-99999999968998245158765467899999876515886133
Q gi|254780579|r 21 SFIRYVKQMH--IPDHPSVSAIVVLT-GEPI---R-IERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC 93 (207)
Q Consensus 21 ~f~~~~~~~~--~~~~~~~DaIVVLg-Gg~~---R-i~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~ 93 (207)
-|...+.... ....++.+-||++| ||.. | +..|+.-+....-...++++.++. .....+......+..
T Consensus 122 ~f~~~i~~g~~~g~~g~~~~~VV~IGIGGS~LGpk~l~~aL~~~~~~~~~i~Fi~N~Dp~-----~~~~~l~~ld~~~Tl 196 (543)
T 3ljk_A 122 ELVEKVVSGRWRGFSGKKITDIVNIGIGGSDLGPKMVVRALQPYHCTDLKVHFVSNVDAD-----SLLQALHVVDPETTL 196 (543)
T ss_dssp HHHHHHHTTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHH-----HHHHHHTTCCGGGEE
T ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHH-----HHHHHHHCCCCCCEE
T ss_conf 999999659702456884344999814220166999999963540488628868999879-----999999638976369
Q ss_pred EECCCCCCCHHHH---HHHHHHHHHHCCC------CEEEEECCHHHHHH
Q ss_conf 2204666660256---9999999986499------81898511442199
Q gi|254780579|r 94 IDIGYKALNTEGN---AQEASAWAEKNNF------HHVLIVTHDYHMPR 133 (207)
Q Consensus 94 I~~e~~s~~T~en---a~~~~~~l~~~~~------~~iiLVTs~yHm~R 133 (207)
+++-.+|-+|.|. +...++|+.+++. ++++.||++-...+
T Consensus 197 fiviSKSgtT~ETl~n~~~~~~wl~~~~~~~~~~~~h~iavt~~~~~~~ 245 (543)
T 3ljk_A 197 LIIASKSFSTEETLLNSISAREWLLDHYEDEKAVANHFVAISSKLDKVK 245 (543)
T ss_dssp EEEECTTSCCHHHHHHHHHHHHHHHHHHCCGGGGGGTEEEECSCHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHH
T ss_conf 9996798873527789999999999851474433026885067648999
No 14
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=68.91 E-value=5.4 Score=18.43 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=7.2
Q ss_pred EEEEECCHHHHHHHHH
Q ss_conf 1898511442199999
Q gi|254780579|r 121 HVLIVTHDYHMPRTFL 136 (207)
Q Consensus 121 ~iiLVTs~yHm~RA~~ 136 (207)
+..++|+.+|.|...+
T Consensus 79 ~~~i~~~~~~~Rk~~m 94 (191)
T 1t35_A 79 TELIEVNGMHERKAKM 94 (191)
T ss_dssp SEEEEESHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHH
T ss_conf 6248958999998999
No 15
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=68.75 E-value=5.5 Score=18.41 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHCCCCCEECCCCCCCCC---HHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 9999968998245158765467---8999998765158861332204666660256999999998649981898511442
Q gi|254780579|r 54 FELLENQIGEKIFISGVHHSVS---KDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH 130 (207)
Q Consensus 54 ~~L~~~g~~~~ii~SG~~~~~~---~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH 130 (207)
-.|.++|+....+++|...... ..+..+..+.+.+++...+.......+.++.......++......++++++++.-
T Consensus 124 ~~L~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~d~~ 203 (295)
T 3hcw_A 124 RHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAML 203 (295)
T ss_dssp HHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHH
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 99997298756775487431578888899999999769994244325660356677777777641477764345577899
Q ss_pred HHHHHHHHHHHC---C-CCEEEEE
Q ss_conf 199999999862---9-9879996
Q gi|254780579|r 131 MPRTFLELQRIN---S-TVQFIPY 150 (207)
Q Consensus 131 m~RA~~~f~~~~---p-~i~i~~~ 150 (207)
...+...++..+ | ++.++.+
T Consensus 204 a~g~~~~l~~~g~~ip~dv~vvg~ 227 (295)
T 3hcw_A 204 HLAILSVLYELNIEIPKDVMTATF 227 (295)
T ss_dssp HHHHHHHHHHTTCCTTTTEEEEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 999999999869988946144414
No 16
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=68.57 E-value=5.5 Score=18.39 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 4678999998765158861332204666660256999999998649981898511442199999999862
Q gi|254780579|r 73 SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRIN 142 (207)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~ 142 (207)
.....++.... .+.|. .|.+|+-...|.+++....+..++.+. .+.|...++-..+...+++..
T Consensus 77 ~~~H~~~~~~a-l~~gk---hv~~EKP~a~~~~ea~~l~~~~~~~~~--~~~v~~~~r~~p~~~~~k~~i 140 (352)
T 3kux_A 77 NDTHFPLAQSA-LAAGK---HVVVDKPFTVTLSQANALKEHADDAGL--LLSVFHNRRWDSDFLTLKTLL 140 (352)
T ss_dssp TTTHHHHHHHH-HHTTC---EEEECSSCCSCHHHHHHHHHHHHHTTC--CEEECCGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHCCC---CEECCCCCCCCCCCCHHHHHHHHHCCC--CCEEEEEECHHHHHHHHHHHH
T ss_conf 88889889999-98599---772268742222321245667876386--300111000003699999988
No 17
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=62.74 E-value=7.2 Score=17.70 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=64.0
Q ss_pred HHHHHHCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 999996899824515876546----7899999876515886133220466666025699999999864998189851144
Q gi|254780579|r 54 FELLENQIGEKIFISGVHHSV----SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207)
Q Consensus 54 ~~L~~~g~~~~ii~SG~~~~~----~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207)
-.|.++|+....+++|..... .....+.....+.++............+..+-.....++++...-...++++++.
T Consensus 126 ~~l~~~G~r~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 205 (289)
T 2fep_A 126 KLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDE 205 (289)
T ss_dssp HHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEESSHH
T ss_pred HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCHH
T ss_conf 99997499579996267543301345667889999984999772227732431144899999999569999658747889
Q ss_pred HHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf 2199999999862---9-98799964
Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPYP 151 (207)
Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~p 151 (207)
....+...++..+ | |+.++.+-
T Consensus 206 ~a~g~~~~l~~~g~~vP~di~i~g~d 231 (289)
T 2fep_A 206 MALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 99999999998599999745996138
No 18
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=60.04 E-value=8 Score=17.41 Aligned_cols=103 Identities=10% Similarity=0.004 Sum_probs=60.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC-------CCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH
Q ss_conf 6878999469857999999999968998245158765-------467899999876515886133220466666025699
Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH-------SVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQ 108 (207)
Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~-------~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~ 108 (207)
.+|++|-.+||.+=..+...+.++|.....+++=..+ +....++.+..+...|+|-..+. ...+-.++..
T Consensus 4 ~~~v~vl~SGGKDS~lAl~~a~~~G~~v~~L~t~~~~~~~s~~~h~~~~~ll~~qA~algiPL~~~~---~~~~~e~~~~ 80 (227)
T 2d13_A 4 LADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGF---TKGEKEKEVE 80 (227)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEE---C--CTTSHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEEEE---CCCCHHHHHH
T ss_conf 6649999368699999999999869927999997438888141557789999999997599717874---6786158999
Q ss_pred HHHHHHHHCCCCEEEE--ECCHHHHHHHHHHHHHH
Q ss_conf 9999998649981898--51144219999999986
Q gi|254780579|r 109 EASAWAEKNNFHHVLI--VTHDYHMPRTFLELQRI 141 (207)
Q Consensus 109 ~~~~~l~~~~~~~iiL--VTs~yHm~RA~~~f~~~ 141 (207)
...+.+++.+++-+.- +-+.||-.|-....++.
T Consensus 81 ~l~~~l~~~~v~~iv~Gdi~~~~~~~~~e~~~~~~ 115 (227)
T 2d13_A 81 DLKNVLEGLKVDGIVAGALASRYQKERIENVAREL 115 (227)
T ss_dssp HHHHHHHTBCCSEEECCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHC
T ss_conf 99999997175607862376288999999999874
No 19
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=59.27 E-value=8.2 Score=17.33 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 666660256999999998
Q gi|254780579|r 98 YKALNTEGNAQEASAWAE 115 (207)
Q Consensus 98 ~~s~~T~ena~~~~~~l~ 115 (207)
+-.--|.+|..++..+.+
T Consensus 117 PGG~GTLdEl~evltl~q 134 (215)
T 2a33_A 117 PGGYGTLEELLEVITWAQ 134 (215)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 887412888999999998
No 20
>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli}
Probab=58.88 E-value=8.4 Score=17.28 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=46.9
Q ss_pred CCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 8613322046666602569999999986499818985114421999999998629987999641676
Q gi|254780579|r 89 LAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207)
Q Consensus 89 i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207)
+....+++-.--..|-+.+..+.+.++++|.++|.+|+ --=.+-...-+.+.+|+++++...+++.
T Consensus 121 ~~~~~villDPmlATG~s~~~ai~~L~~~G~~~I~iv~-~ias~~Gi~~l~~~~P~v~I~ta~iD~~ 186 (208)
T 2ehj_A 121 IDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLV-LVAAPEGIAALEKAHPDVELYTASIDQG 186 (208)
T ss_dssp GGGCEEEEEEEEESSCHHHHHHHHHHHHTTCCEEEEEE-EEECHHHHHHHHHHCTTSEEEESCBCSE
T ss_pred CCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEE-EEECHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 66676999683674567799999999857998289999-9855899999998794978999986688
No 21
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=54.14 E-value=10 Score=16.80 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=32.8
Q ss_pred HHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 13322046666602569999999986499818985114421999999998629987999641676667
Q gi|254780579|r 91 ECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLE 158 (207)
Q Consensus 91 ~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~ 158 (207)
++.++.-..+..|.+ .....+.++++|.+ ++.+|+.-. + +.+. .|+ ..+.|+....+.
T Consensus 83 ~Dv~i~iS~sG~t~~-~i~~~~~ak~~g~~-vI~IT~~~~-~----l~~~--aD~-~l~~~~~~~~~~ 140 (180)
T 1jeo_A 83 DDLLILISGSGRTES-VLTVAKKAKNINNN-IIAIVCECG-N----VVEF--ADL-TIPLEVKKSKYL 140 (180)
T ss_dssp TCEEEEEESSSCCHH-HHHHHHHHHTTCSC-EEEEESSCC-G----GGGG--CSE-EEECCCCCBTTB
T ss_pred CCEEEEECCCCCCHH-HHHHHHHHHHCCCC-EEEEECCCC-C----CHHH--CCE-EEECCCCCCCCC
T ss_conf 998999759998089-99999999975997-999969999-7----5777--778-886256764567
No 22
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, disulphide bond, oxidoreductase; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus PY2} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
Probab=52.90 E-value=11 Score=16.68 Aligned_cols=38 Identities=16% Similarity=-0.057 Sum_probs=27.3
Q ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 676545687899946985799999999996899824515
Q gi|254780579|r 30 HIPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207)
Q Consensus 30 ~~~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207)
..++|++.|.| |.|||+.=+..|+.+.+.|....++-.
T Consensus 37 ~~~~pk~YDvv-IIG~GpAG~~aA~~~a~~g~~v~lIE~ 74 (523)
T 1mo9_A 37 DENDPREYDAI-FIGGGAAGRFGSAYLRAMGGRQLIVDR 74 (523)
T ss_dssp CTTCCSCBSEE-EECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCCCCEE-EECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 89999800989-999788999999999987998899976
No 23
>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=51.96 E-value=11 Score=16.59 Aligned_cols=44 Identities=14% Similarity=-0.103 Sum_probs=31.7
Q ss_pred CHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 6133220466666025699999999864998189851144219999
Q gi|254780579|r 90 AECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTF 135 (207)
Q Consensus 90 ~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~ 135 (207)
+.+.++.-..|..|.|-.. ..+.++++|. .++.+|+..+.+=+.
T Consensus 92 ~~Dv~I~iS~SG~t~e~i~-~~~~ak~~g~-~vI~IT~~~~s~la~ 135 (201)
T 3fxa_A 92 KEDILILISKGGNTGELLN-LIPACKTKGS-TLIGVTENPDSVIAK 135 (201)
T ss_dssp TTCEEEEECSSSCCHHHHT-THHHHHHHTC-EEEEEESCTTSHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHCCC-EEEEEECCCCCCCCC
T ss_conf 7888998789999578999-9999998398-089983689997534
No 24
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1
Probab=50.17 E-value=12 Score=16.42 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=46.7
Q ss_pred CCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 88613322046666602569999999986499818985114421999999998629987999641676
Q gi|254780579|r 88 DLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207)
Q Consensus 88 ~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207)
.+....+++-.--.-|-..+..+.+.++++|.++|++|+- .=.+=....+.+++|+++++...+++.
T Consensus 120 ~i~~~~vil~DPmlATG~s~~~ai~~Lk~~g~~~I~~v~~-ias~~Gi~~v~~~~P~v~I~ta~iD~~ 186 (208)
T 1v9s_A 120 DIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAI-LAAPEGLERIAKDHPDTEVVVAAIDER 186 (208)
T ss_dssp CGGGSCEEEECSEESSSHHHHHHHHHHHHTTCCSCEEEEE-EECHHHHHHHHHHCTTCEEEEEEECSE
T ss_pred CCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 5135779996836634377999999998659984699999-527899999998796978999996787
No 25
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=49.27 E-value=12 Score=16.33 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=17.0
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 22046666602569999999986499-818985
Q gi|254780579|r 94 IDIGYKALNTEGNAQEASAWAEKNNF-HHVLIV 125 (207)
Q Consensus 94 I~~e~~s~~T~ena~~~~~~l~~~~~-~~iiLV 125 (207)
.+.-+-.--|.+|..++..|.+-... +.++++
T Consensus 109 fIvlPGG~GTLdEl~evltl~qlg~~~kpiill 141 (216)
T 1ydh_A 109 FIALPGGYGTMEELLEMITWSQLGIHKKTVGLL 141 (216)
T ss_dssp EEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 998488723599999999999806756872798
No 26
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=47.56 E-value=13 Score=16.16 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=49.4
Q ss_pred CCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 8613322046666602569999999986499818985114421999999998629987999641676
Q gi|254780579|r 89 LAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207)
Q Consensus 89 i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207)
+.+..+++-.--.-|-+.+..+.+.+.++|.++|++| |-.=.+=....+.+.+|+++++...+++.
T Consensus 122 i~~~~villDPmlATG~s~~~ai~~L~~~G~~~I~~v-s~ias~~Gl~~l~~~~P~v~I~t~~iD~~ 187 (209)
T 1i5e_A 122 VEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFM-CLIAAPEGVKAVETAHPDVDIYIAALDER 187 (209)
T ss_dssp TTTSEEEEECSEESSSHHHHHHHHHHHHTTCCCEEEE-CSEECHHHHHHHHHHCTTCEEEESEECCE
T ss_pred CCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEE-EEECCHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 1038689758688647779999999996699857999-98507999999998794978999996788
No 27
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=47.41 E-value=13 Score=16.15 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=32.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHH------CCCCHHHEECCCCCCCHHH
Q ss_conf 87899946985799999999996899824515876546789999987651------5886133220466666025
Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIR------QDLAECCIDIGYKALNTEG 105 (207)
Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~------~~i~~~~I~~e~~s~~T~e 105 (207)
.++|||.|-.+-=+.+-++|.++|..++-++-|..-++-.+.-.++.+.+ .++|.- .....+.-|+.-
T Consensus 133 ~~aIvvIGNAPTAL~~Ll~li~~~~~~PalVIG~PVGFVgA~ESKe~L~~~~~~~~s~iP~I-t~~GrkGGS~iA 206 (231)
T 2afr_A 133 NESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYI-LTMGRKGGSTIA 206 (231)
T ss_dssp TTCEEEESSCHHHHHHHHHHHHHHCCCCSEEEECCCCSSSHHHHHHHHHHHHHTTSCCCCEE-EECSSCCCHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEE-EEECCCCCHHHH
T ss_conf 89789973880799999999985999877799789886378999999985412357999989-982698669999
No 28
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=47.22 E-value=8.2 Score=17.33 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=47.0
Q ss_pred CCEEEEECCCHHHHH--HHHHHHHHCCCCCEECCCCCCC------CCHHHHHHHHHHHCCCCHHHEECC------CCCCC
Q ss_conf 878999469857999--9999999689982451587654------678999998765158861332204------66666
Q gi|254780579|r 37 VSAIVVLTGEPIRIE--RAFELLENQIGEKIFISGVHHS------VSKDILLQKIPIRQDLAECCIDIG------YKALN 102 (207)
Q Consensus 37 ~DaIVVLgGg~~Ri~--~a~~L~~~g~~~~ii~SG~~~~------~~~~~~~~~~~~~~~i~~~~I~~e------~~s~~ 102 (207)
.-.+|-++||.+=+. +.+.-++....-.+..-=++.+ ..+++..+.++.+.+++-....++ ....+
T Consensus 19 ~~v~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~hvnh~lr~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 98 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLG 98 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHCCCCCC
T ss_conf 98999980719999999999998897298599999779899866699999999999984991999998600110258989
Q ss_pred HHHHHHHHH-----HHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 025699999-----999864998189851144219999
Q gi|254780579|r 103 TEGNAQEAS-----AWAEKNNFHHVLIVTHDYHMPRTF 135 (207)
Q Consensus 103 T~ena~~~~-----~~l~~~~~~~iiLVTs~yHm~RA~ 135 (207)
..+.|+..+ +++++.+...+++ +.|+-=-.
T Consensus 99 ~e~~aR~~Ry~~~~~~~~~~~~~~i~~---aHh~dD~~ 133 (464)
T 3a2k_A 99 AQEAARICRYRFFAELMEKHQAGYVAV---GHHGDDQV 133 (464)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTCCEEEC---CCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEE---EEECCCHH
T ss_conf 899999999876412333456315875---42047589
No 29
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815}
Probab=46.02 E-value=13 Score=16.02 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=69.6
Q ss_pred HHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 99999689982451587654678---999998765158861332204666660256999999998649981898511442
Q gi|254780579|r 54 FELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYH 130 (207)
Q Consensus 54 ~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yH 130 (207)
-.|.++|.....+++|....... .+-+.....+.+.+.+.+..-....+..+....+.++++..+--+.++++++..
T Consensus 121 ~~L~~~G~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 200 (290)
T 2rgy_A 121 ATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTM 200 (290)
T ss_dssp HHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHHH
T ss_pred HHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHH
T ss_conf 99998398516217787322206777778888899709986502201468888999999975200256763388537388
Q ss_pred HHHHHHHHHHHC---C-CCEEEEEECCC-CC-CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 199999999862---9-98799964167-66-675--4211698999999999999999999876
Q gi|254780579|r 131 MPRTFLELQRIN---S-TVQFIPYPIIS-HD-LEE--NSSIFKIKILRVLLIEYLKILLLSIQLS 187 (207)
Q Consensus 131 m~RA~~~f~~~~---p-~i~i~~~pv~~-~~-~~~--~~Ww~~~~~~~~~~~Ey~K~l~~~lr~~ 187 (207)
+..+...++..+ | ++.++.+--.. .. ..+ ...-++... +-.+-++.+...++..
T Consensus 201 a~g~~~al~~~g~~vP~dv~vig~d~~~~~~~~~p~ltti~~~~~~---~g~~av~~L~~~i~g~ 262 (290)
T 2rgy_A 201 AVSALARFQQLGISVPGDVSVIGYDDDYSAAYAAPALTSVHIPTAE---LTQNAVRWLINQCYGT 262 (290)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEEECCTTSTTSSSCCEEEECCHHH---HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHCCCCCEEEEECHHH---HHHHHHHHHHHHHCCC
T ss_conf 8889999998699899961899979838998248994599949999---9999999999986599
No 30
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=45.04 E-value=14 Score=15.93 Aligned_cols=68 Identities=18% Similarity=0.032 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH--CCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999999996--89982451587654678999998765158861332204666660256999999998649981
Q gi|254780579|r 49 RIERAFELLEN--QIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHH 121 (207)
Q Consensus 49 Ri~~a~~L~~~--g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~ 121 (207)
.++.|++|.+. +.+-+.+--|+-....|-......+.+.|+ .+|+..-=..+|..+..+++.+.|+++
T Consensus 146 ~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avA~aca~~g~-----~lEPTGGId~~N~~eI~~i~ldaGv~k 215 (249)
T 3m0z_A 146 PLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDF-----WLEPTGGIDLENYSEILKIALDAGVSK 215 (249)
T ss_dssp EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTC-----EEEEBSSCCTTTHHHHHHHHHHHTCSC
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC-----EECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 1999999999749981667506773419999999999997691-----676679857888999999999839982
No 31
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=44.70 E-value=14 Score=15.89 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=20.9
Q ss_pred CCCEEEEECCCH---HHHHHHHHHHHH-CCCCCEECCCCCCCCCHHH
Q ss_conf 687899946985---799999999996-8998245158765467899
Q gi|254780579|r 36 SVSAIVVLTGEP---IRIERAFELLEN-QIGEKIFISGVHHSVSKDI 78 (207)
Q Consensus 36 ~~DaIVVLgGg~---~Ri~~a~~L~~~-g~~~~ii~SG~~~~~~~~~ 78 (207)
..+.+++-||.. +-.+.|-+|-+. +..-.-+++|++++.=++.
T Consensus 146 ~p~~VfC~GghsI~~~eY~~A~eLG~~LA~rG~~VITGGGpGiMEAa 192 (462)
T 3gh1_A 146 TPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAMEGP 192 (462)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
T ss_conf 89879994999999899999999999999879989979778999899
No 32
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=43.74 E-value=15 Score=15.80 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=63.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89994698579999999999689982451587654678999998765158861332204666660256999999998649
Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNN 118 (207)
Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~ 118 (207)
++-+|-+|..=.....+++-.-..-.+.+.- ++...+....- ......+....+++-.--..|-+.+..+.+.++++|
T Consensus 86 ~V~ILRaGl~m~~g~~~~~P~a~~g~i~i~r-~~~t~~~~~yy-~klP~~~~~~~VillDPmlATG~s~~~ai~~L~~~G 163 (221)
T 1o5o_A 86 VVPILRAGLVMADGILELLPNASVGHIGIYR-DPETLQAVEYY-AKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENG 163 (221)
T ss_dssp EEEEETTHHHHHHHHHHHSTTCEECEEEEEE-CTTTCCEEEEE-EECCCCCTTCEEEEECSEESSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHCCCCCEEEEEEEE-CCCCCCCEEEE-EECCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCC
T ss_conf 9884056640778999977876413788873-58888818750-107866346728987788647712999999998659
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9818985114421999999998629987999641676
Q gi|254780579|r 119 FHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207)
Q Consensus 119 ~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207)
.++|.+|+- .=.+-....+.+.+|+++++...+++.
T Consensus 164 ~~~I~~v~~-ias~~Gi~~i~~~~P~v~I~ta~iD~~ 199 (221)
T 1o5o_A 164 AKKITLVAL-IAAPEGVEAVEKKYEDVKIYVAALDER 199 (221)
T ss_dssp CCEEEEECS-EECHHHHHHHHHHCTTCEEEESEECSE
T ss_pred CCEEEEEEE-EECHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 970899998-855899999998787988999984586
No 33
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583}
Probab=42.84 E-value=15 Score=15.72 Aligned_cols=96 Identities=7% Similarity=-0.014 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHCCCCCEECC--C-C-CCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 799999999996899824515--8-7-65467899999876515886133220466666025699999999864998189
Q gi|254780579|r 48 IRIERAFELLENQIGEKIFIS--G-V-HHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVL 123 (207)
Q Consensus 48 ~Ri~~a~~L~~~g~~~~ii~S--G-~-~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~ii 123 (207)
+++..-++.+++.-.|.|.+- + . ..+....+ ........+..+.+++...|-+.+- ...++|+++|+++++
T Consensus 31 ~~i~~l~~~~r~~g~pVi~v~h~~~~~~~g~~~~~----l~~~l~~~~~~~v~~K~~~saF~~t-~L~~~L~~~~i~~li 105 (167)
T 2a67_A 31 DKVNQRIAVYRQHHAPIIFVQHEETELPFGSDSWQ----LFEKLDTQPTDFFIRKTHANAFYQT-NLNDLLTEQAVQTLE 105 (167)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECBTTBCTTSTTTS----BCTTSCCCTTSEEEEESSSSTTTTS-SHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC----CCCCCCCCCCCEEEECCCCCCCCCC-HHHHHHHHCCCCEEE
T ss_conf 99999999998859967998327898899998564----4802188999989978875677786-299999865998899
Q ss_pred EECCHHH--HHHHHHHHHHHCCCCEEEEE
Q ss_conf 8511442--19999999986299879996
Q gi|254780579|r 124 IVTHDYH--MPRTFLELQRINSTVQFIPY 150 (207)
Q Consensus 124 LVTs~yH--m~RA~~~f~~~~p~i~i~~~ 150 (207)
++==.-| ...+-...... |.+++..
T Consensus 106 l~G~~t~~CV~~Ta~~a~~~--Gy~v~vv 132 (167)
T 2a67_A 106 IAGVQTEFCVDTTIRMAHGL--GYTCLMT 132 (167)
T ss_dssp EEEECTTTHHHHHHHHHHHH--TCEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHC--CCEEEEE
T ss_conf 99615357899999999978--8989996
No 34
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=41.96 E-value=16 Score=15.63 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=31.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHC--CCCHHHEEC-CCCCCCHH
Q ss_conf 878999469857999999999968998245158765467899999876515--886133220-46666602
Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQ--DLAECCIDI-GYKALNTE 104 (207)
Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~--~i~~~~I~~-e~~s~~T~ 104 (207)
.++|||.|-.+-=+.+-++|.++|..++-++-|..-++-.+.-.++.+.+. ++|. |.+ ..+.-|+.
T Consensus 138 ~gaIvvIGNAPTAL~~lleli~~g~~~PalVIG~PVGFVgAaESKe~L~~~~~~vP~--It~~GrkGGS~v 206 (219)
T 1f2v_A 138 AGSVVAIGNAPTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESKDALAENSYGVPF--AIVRGRLGGSAM 206 (219)
T ss_dssp TTCEEEECSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCE--EEECTTCCCHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCE--EEEECCCCCHHH
T ss_conf 998899768759999999999838998718996797654749999999847799997--998259865999
No 35
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.129.1.1
Probab=41.96 E-value=16 Score=15.63 Aligned_cols=20 Identities=10% Similarity=-0.119 Sum_probs=10.6
Q ss_pred CCEEEEECCHHHHHHHHHHH
Q ss_conf 98189851144219999999
Q gi|254780579|r 119 FHHVLIVTHDYHMPRTFLEL 138 (207)
Q Consensus 119 ~~~iiLVTs~yHm~RA~~~f 138 (207)
.-+..++|+.+|.|-..+.-
T Consensus 77 ~~~~~i~~~~~~~Rk~~m~~ 96 (171)
T 1weh_A 77 FVDLELPAATLPQRIGRLLD 96 (171)
T ss_dssp TCSEECCCSSHHHHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHH
T ss_conf 85531003528899899997
No 36
>3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=41.77 E-value=16 Score=15.61 Aligned_cols=98 Identities=8% Similarity=0.063 Sum_probs=54.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH------------HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCH
Q ss_conf 68789994698579999999999------------689982451587654678999998765158861332204666660
Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLE------------NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNT 103 (207)
Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~------------~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T 103 (207)
..+.+-|..-..++.+..++-|. .....-++++ .+.....+.... +.+.|. .|.+|+-...|
T Consensus 29 ~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~V~i~--tp~~~h~~~~~~-al~~gk---~V~~EKP~a~~ 102 (354)
T 3db2_A 29 KLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIIT--VPNDKHAEVIEQ-CARSGK---HIYVEKPISVS 102 (354)
T ss_dssp SEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEEC--SCTTSHHHHHHH-HHHTTC---EEEEESSSCSS
T ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEC--CCHHHHHHHHHH-HHHCCC---EEEEECCCCCC
T ss_conf 948999988999999999998199833899999569999889987--977888888999-997899---79996686432
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 25699999999864998189851144219999999986
Q gi|254780579|r 104 EGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRI 141 (207)
Q Consensus 104 ~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~ 141 (207)
.+++....+..++++.. +.|...++.-.+...+++.
T Consensus 103 ~~e~~~l~~~a~~~~~~--~~v~~~~r~~p~~~~~~~l 138 (354)
T 3db2_A 103 LDHAQRIDQVIKETGVK--FLCGHSSRRLGALRKMKEM 138 (354)
T ss_dssp HHHHHHHHHHHHHHCCC--EEEECGGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC--CCCCEEEEEHHHHHHHHHH
T ss_conf 37888888899860776--4222100001466777775
No 37
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=41.01 E-value=16 Score=15.54 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=44.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC---CCC--HHHHHHHHHHHCCCCHHHEEC--CCCCCCHHHHHH
Q ss_conf 6878999469857999999999968998245158765---467--899999876515886133220--466666025699
Q gi|254780579|r 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHH---SVS--KDILLQKIPIRQDLAECCIDI--GYKALNTEGNAQ 108 (207)
Q Consensus 36 ~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~---~~~--~~~~~~~~~~~~~i~~~~I~~--e~~s~~T~ena~ 108 (207)
..|.|.|.||..+=-..|++ + ....|..-+.+. +.. .+..+++..+..++.-..++- ...-.++.+|+.
T Consensus 75 r~~iv~V~gg~~~~NR~A~e---~-~VDiL~~P~~~r~d~gi~hvlak~A~e~gValEIn~s~ll~~~~~~R~~~l~n~~ 150 (212)
T 1v77_A 75 KSYLIYVESNDLRVIRYSIE---K-GVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMM 150 (212)
T ss_dssp SSSEEEEECSCHHHHHHHHH---T-TCSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHH---C-CCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHCCCCCCHHHHHHHHH
T ss_conf 47199997897789899871---7-9548956865467778578999999978918999762764479864789999999
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf 999999864998189851144219
Q gi|254780579|r 109 EASAWAEKNNFHHVLIVTHDYHMP 132 (207)
Q Consensus 109 ~~~~~l~~~~~~~iiLVTs~yHm~ 132 (207)
...++.++++.. ++|+|+-|.+
T Consensus 151 ~ll~L~kky~~p--iVvsSdAhs~ 172 (212)
T 1v77_A 151 KAWKLVEKYKVR--RFLTSSAQEK 172 (212)
T ss_dssp HHHHHHHHHTCC--EEEECCCSSG
T ss_pred HHHHHHHHHCCC--EEEECCCCCH
T ss_conf 999999981998--8997699982
No 38
>3bq9_A Predicted rossmann fold nucleotide-binding domain-containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica OS145}
Probab=40.82 E-value=16 Score=15.52 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=22.7
Q ss_pred CCCEEEEECCCH---HHHHH----HHHHHHHCCCCCEECCCCCCCCCHHHHHH
Q ss_conf 687899946985---79999----99999968998245158765467899999
Q gi|254780579|r 36 SVSAIVVLTGEP---IRIER----AFELLENQIGEKIFISGVHHSVSKDILLQ 81 (207)
Q Consensus 36 ~~DaIVVLgGg~---~Ri~~----a~~L~~~g~~~~ii~SG~~~~~~~~~~~~ 81 (207)
....|+|-||.. +-... |-.|.+.|. -+++|+++..=++....
T Consensus 144 ~p~~V~C~GGhsI~~~eY~~AreLG~~LA~~G~---~IVTGGGpGgMeAa~aG 193 (460)
T 3bq9_A 144 EPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGL---NICTGCGPGAMKGPMKG 193 (460)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTC---EEEECCSSGGGTHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC---EEEECCCHHHHHHHHHH
T ss_conf 998899979998997999999999999998799---89989866888599998
No 39
>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.49.1.2
Probab=40.06 E-value=17 Score=15.45 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 4666660256999999998649981898511442199999999862998799964167666754211698999
Q gi|254780579|r 97 GYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKIL 169 (207)
Q Consensus 97 e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~~~~Ww~~~~~~ 169 (207)
..-..||.+-+..+.+.+++.|++++++-++.=-+....+. .+.|++++...-...-.++..|-.+++..
T Consensus 22 ~~G~~NT~~tl~~a~erA~e~gIk~iVVASssG~TA~k~~e---~~kg~~lVvVth~~GF~~pg~~e~~~e~~ 91 (201)
T 1vp8_A 22 KPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALE---MAEGLEVVVVTYHTGFVREGENTMPPEVE 91 (201)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHH---HCTTCEEEEEECCTTSSSTTCCSSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 88831389999999999998699779997088669999999---74598299995636878999574899999
No 40
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=39.90 E-value=17 Score=15.44 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=25.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf 8999469857999999999968998245158
Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISG 69 (207)
Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG 69 (207)
-+||.|+|+-=+.+|+.|.+.|....|+=-|
T Consensus 109 ~~vVVGaGpAGl~AAl~la~~G~~V~vlEk~ 139 (549)
T 3nlc_A 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERG 139 (549)
T ss_dssp CCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7499896199999999999789938999557
No 41
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3}
Probab=37.84 E-value=18 Score=15.24 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=23.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 456878999469857999999999968998245
Q gi|254780579|r 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIF 66 (207)
Q Consensus 34 ~~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii 66 (207)
|.++| |+|.|||.-=+..|.+|.++|..-.|+
T Consensus 3 p~~~D-v~IIGaGi~Gls~A~~La~~G~~V~li 34 (382)
T 1y56_B 3 PEKSE-IVVIGGGIVGVTIAHELAKRGEEVTVI 34 (382)
T ss_dssp CSBCS-EEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCC-EEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 88699-999992099999999999789939998
No 42
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua}
Probab=36.70 E-value=19 Score=15.13 Aligned_cols=110 Identities=9% Similarity=0.008 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC-----CCEEEE
Q ss_conf 789999987651588613322046666602569999999986499818985114421999999998629-----987999
Q gi|254780579|r 75 SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINS-----TVQFIP 149 (207)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p-----~i~i~~ 149 (207)
...++... +.+.|. -|.+|+--..|.+++....+..++.+. .+.|...+.-..+...+++... ++.-+-
T Consensus 77 ~h~~~~~~-al~~gk---hv~~EKP~a~~~~e~~~l~~~~~~~~~--~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~i~ 150 (359)
T 3e18_A 77 SHKELAIS-ALEAGK---HVVCEKPVTMTSEDLLAIMDVAKRVNK--HFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLE 150 (359)
T ss_dssp GHHHHHHH-HHHTTC---EEEEESSCCSSHHHHHHHHHHHHHHTC--CEEEECGGGGCHHHHHHHHHHHHTTTSSEEEEE
T ss_pred HHHHHHHH-HHHCCC---EEEEECCCCCHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 52356788-885398---199957864208788788999975276--542222211475220243321221478448999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 64167666754211698999999999999999999876055
Q gi|254780579|r 150 YPIISHDLEENSSIFKIKILRVLLIEYLKILLLSIQLSLST 190 (207)
Q Consensus 150 ~pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K~l~~~lr~~i~~ 190 (207)
.-.......+.+|......---++.+..=..+..++.-++.
T Consensus 151 ~~~~~~~~~~~~w~~~~~~~gg~l~~~g~H~iD~~~~l~G~ 191 (359)
T 3e18_A 151 SRVHGANGIPGDWRHLKAHGGGMVLDWGVHLLDQLLFLVDS 191 (359)
T ss_dssp EEEECSSCSCSSGGGCGGGTCSHHHHTHHHHHHHHHHHCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEHHCCCCCCHHHHHHCCC
T ss_conf 99716888994312441037876003132210232422299
No 43
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=36.25 E-value=19 Score=15.08 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=56.3
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCC--HHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999999689982451587654678---99999876515886--133220466666025699999999864998189851
Q gi|254780579|r 52 RAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLA--ECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVT 126 (207)
Q Consensus 52 ~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~--~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVT 126 (207)
.+-.|+++|.....+++|....... .+-......+.+.+ ...+... ..+..+-.....+++++...-..++++
T Consensus 168 a~~~l~~~G~~~I~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~ 245 (340)
T 1qpz_A 168 AGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG--DFEPESGYRAMQQILSQPHRPTAVFCG 245 (340)
T ss_dssp HHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCC--CSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 999999829986999937644521789999999999986999980138965--752568999999998379998279956
Q ss_pred CHHHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf 1442199999999862---9-98799964
Q gi|254780579|r 127 HDYHMPRTFLELQRIN---S-TVQFIPYP 151 (207)
Q Consensus 127 s~yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207)
++.....+...+++.+ | ++.++.+-
T Consensus 246 ~d~~A~~~~~~l~~~G~~vP~di~vvg~d 274 (340)
T 1qpz_A 246 GDIMAMGALCAADEMGLRVPQDVSLIGYD 274 (340)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 82888999899998599889985999878
No 44
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: PG4; 1.50A {Vibrio cholerae}
Probab=36.20 E-value=19 Score=15.08 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=54.2
Q ss_pred CCCCCCCEEEEECCC-H----HHHHHHHHHHHHCCCCC-EECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHH
Q ss_conf 654568789994698-5----79999999999689982-45158765467899999876515886133220466666025
Q gi|254780579|r 32 PDHPSVSAIVVLTGE-P----IRIERAFELLENQIGEK-IFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEG 105 (207)
Q Consensus 32 ~~~~~~DaIVVLgGg-~----~Ri~~a~~L~~~g~~~~-ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~e 105 (207)
...++.+.||++|-| . .-+..|+.- ....+. .++++.++. .....+......+..+++-.+|-+|.|
T Consensus 167 ~tgk~~~~vV~IGIGGS~LGp~~~~~al~~--~~~~~~~~fvsn~D~~-----~l~~~l~~ld~~~TlfiviSKSftT~E 239 (574)
T 3hjb_A 167 FTGKAITDVVNIGIGGSDLGPYMVTEALVP--YKNHLTVHFVSNVDGT-----HMAETLKNVDPETTLFLVASKTFTTQE 239 (574)
T ss_dssp TTSCBCCEEEEECCGGGTHHHHHHHHHTGG--GCCSCEEEEECCSSHH-----HHHHHHTTCCGGGEEEEEECSSSCCHH
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHH-----HHHHHHHCCCCCCEEEEEECCCCCCHH
T ss_conf 678866607998060746889999998620--2458505535899989-----999999538965379999758889564
Q ss_pred HH---HHHHHHHHHCC-----C-CEEEEECCHHHH
Q ss_conf 69---99999998649-----9-818985114421
Q gi|254780579|r 106 NA---QEASAWAEKNN-----F-HHVLIVTHDYHM 131 (207)
Q Consensus 106 na---~~~~~~l~~~~-----~-~~iiLVTs~yHm 131 (207)
.. ...++|+.+.+ . +.++.||++--.
T Consensus 240 Tl~n~~~~~~wl~~~~~~~~~~~~hfvavt~~~~~ 274 (574)
T 3hjb_A 240 TMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKA 274 (574)
T ss_dssp HHHHHHHHHHHHHHHHCSGGGGGGTEEEESSCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHEEECCCCHHH
T ss_conf 79999999999997248667666760003464678
No 45
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=35.11 E-value=20 Score=14.97 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 56878999469857999999999968998245
Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIF 66 (207)
Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii 66 (207)
.+.| |||.|||..=+..|..|.++|..-.|+
T Consensus 3 ~~~D-VvIIGaGisGLsaA~~L~~~G~~V~Vl 33 (520)
T 1s3e_A 3 NKCD-VVVVGGGISGMAAAKLLHDSGLNVVVL 33 (520)
T ss_dssp CBCS-EEEECCBHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCC-EEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 9878-899896989999999998789988999
No 46
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A*
Probab=35.08 E-value=20 Score=14.97 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=23.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 89994698579999999999689982451
Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFI 67 (207)
Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~ 67 (207)
-|+|.|||..=+..|..|.++|..-.|+=
T Consensus 5 ki~IIGaG~sGL~~A~~L~k~g~~V~v~E 33 (384)
T 2bi7_A 5 KILIVGAGFSGAVIGRQLAEKGHQVHIID 33 (384)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 69998961999999999984899579997
No 47
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=34.93 E-value=20 Score=14.95 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCCCCCCEEEEECCCH----HHHHHHHHHHHHCCCCCEEC
Q ss_conf 6545687899946985----79999999999689982451
Q gi|254780579|r 32 PDHPSVSAIVVLTGEP----IRIERAFELLENQIGEKIFI 67 (207)
Q Consensus 32 ~~~~~~DaIVVLgGg~----~Ri~~a~~L~~~g~~~~ii~ 67 (207)
+....+|++|||.|.. +=+.+-++..++..-|.+.+
T Consensus 34 ~~~~~a~vVIVL~G~yt~~s~WI~~EI~~A~~~~KPIIgV 73 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITV 73 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEE
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 3325598999994044467689999999999869988999
No 48
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=34.88 E-value=20 Score=14.95 Aligned_cols=112 Identities=9% Similarity=-0.020 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-----CCCE
Q ss_conf 54678999998765158861332204666660256999999998649981898511442199999999862-----9987
Q gi|254780579|r 72 HSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRIN-----STVQ 146 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~-----p~i~ 146 (207)
+.....+..... .+.|.+ |.+|+--..+.+++....+..++++.. +.|--.+...-+...+++.. .++.
T Consensus 76 p~~~H~~~~~~a-l~~gk~---v~~EKPl~~~~~e~~~l~~~~~~~~~~--~~v~~~~r~~p~~~~~k~~i~~~~iG~i~ 149 (330)
T 3e9m_A 76 YNQGHYSAAKLA-LSQGKP---VLLEKPFTLNAAEAEELFAIAQEQGVF--LMEAQKSVFLPITQKVKATIQEGGLGEIL 149 (330)
T ss_dssp CGGGHHHHHHHH-HHTTCC---EEECSSCCSSHHHHHHHHHHHHHTTCC--EEECCSGGGCHHHHHHHHHHHTTTTCSEE
T ss_pred CHHHHHHHHHHH-HHCCCC---EEECCCCHHHHHHHHHHHHHHHHHCCC--EEEEECCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 707689999999-985995---764032112256778899999863541--12100124576313444466517866137
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9996416766675421169899999999999999999987605
Q gi|254780579|r 147 FIPYPIISHDLEENSSIFKIKILRVLLIEYLKILLLSIQLSLS 189 (207)
Q Consensus 147 i~~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K~l~~~lr~~i~ 189 (207)
-+.+-.........+|+.+++.--..+.+..=.....++.-++
T Consensus 150 ~~~~~~~~~~~~~~~w~~~~~~gGg~l~d~~~H~id~~~~l~G 192 (330)
T 3e9m_A 150 WVQSVTAYPNVDHIPWFYSREAGGGALHGSGSYPLQYLQYVLG 192 (330)
T ss_dssp EEEEEEEESCCTTCGGGGCTTTTCSHHHHHSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCCCCCHHHCCCEEEECCCCCHHHHHHHHC
T ss_conf 8766642588664211357532887673055321166798739
No 49
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=33.54 E-value=21 Score=14.82 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=58.7
Q ss_pred HHHHHHHCCCCCEECCCCCCCCCHH---HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 9999996899824515876546789---9999876515886133220466666025699999999864998189851144
Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSKD---ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207)
Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~~---~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207)
+-.|+++|.....+++|.....+.. +-.+..+...+.... ......+.+......+++.+++....++++++.
T Consensus 166 ~~~l~~~G~~~i~~~~g~~~~~~~~~r~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 241 (333)
T 3jvd_A 166 TESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVT----FHFGHYSVESGEEMAQVVFNNGLPDALIVASPR 241 (333)
T ss_dssp HHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE----EEECCSSHHHHHHHHHHHHHTCCCSEEEECCHH
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCE----EEECCCCHHHHHHHHHHHHCCCCCCEEEECCHH
T ss_conf 6777642880368970442103678889999999997599732----652455202178889999627998743107999
Q ss_pred HHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf 2199999999862---9-9879996
Q gi|254780579|r 130 HMPRTFLELQRIN---S-TVQFIPY 150 (207)
Q Consensus 130 Hm~RA~~~f~~~~---p-~i~i~~~ 150 (207)
-..-+...++..+ | ++.++.+
T Consensus 242 ~A~g~~~al~~~g~~vP~disvig~ 266 (333)
T 3jvd_A 242 LMAGVMRAFTRLNVRVPHDVVIGGY 266 (333)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 9999999999849999998799997
No 50
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=33.46 E-value=21 Score=14.81 Aligned_cols=120 Identities=6% Similarity=-0.090 Sum_probs=62.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 82451587654678999998765158861332204666660256999999998649981898511442199999999862
Q gi|254780579|r 63 EKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRIN 142 (207)
Q Consensus 63 ~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~ 142 (207)
..++++ .+.....+.... +.+.|. -|.+|+--..|.++++...+..++++.. +.|-..+.-..+....++..
T Consensus 74 D~V~I~--tp~~~H~~~~~~-al~~gk---~Vl~EKP~a~~~~e~~~l~~~~~~~~~~--~~v~~~~R~~p~~~~~k~~i 145 (312)
T 3o9z_A 74 DYLSIA--SPNHLHYPQIRM-ALRLGA---NALSEKPLVLWPEEIARLKELEARTGRR--VYTVLQLRVHPSLLALKERL 145 (312)
T ss_dssp SEEEEC--SCGGGHHHHHHH-HHHTTC---EEEECSSSCSCHHHHHHHHHHHHHHCCC--EEECCGGGGCHHHHHHHHHH
T ss_pred EEEEEC--CCCHHHHHHHHH-HHHCCC---CEEEECCCCCCHHHHHHHHHHHHHCCCC--EEEEEEEECCHHHHHHHHHH
T ss_conf 599998--995789999999-997199---4898048758777877899998863982--36300100699999999999
Q ss_pred -C---C-CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -9---9-8799964167666754211698999999999999999999876055
Q gi|254780579|r 143 -S---T-VQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKILLLSIQLSLST 190 (207)
Q Consensus 143 -p---~-i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K~l~~~lr~~i~~ 190 (207)
. + +...........+....|+.+...---++.+..=..+..++.-+++
T Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~~~H~id~~~~l~G~ 198 (312)
T 3o9z_A 146 GQEKGAKDVVLTYVTGRGKWYGKSWKVDEAKSGGLATNIGIHFFDLLAWLFGR 198 (312)
T ss_dssp HTCCSCEEEEEEEEECCCTTGGGSGGGCHHHHCCHHHHTTHHHHHHHHHHHCC
T ss_pred HHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCC
T ss_conf 70887605998764046765420002571137872221478999999998599
No 51
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=33.02 E-value=22 Score=14.76 Aligned_cols=146 Identities=11% Similarity=-0.011 Sum_probs=71.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHH------------HCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHH
Q ss_conf 8789994698579999999999------------6899824515876546789999987651588613322046666602
Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLE------------NQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTE 104 (207)
Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~------------~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ 104 (207)
.+..-|-.-..+|..+..+.|. ......++++ .+.....++.... .+.|. .|.+|+--..|.
T Consensus 28 ~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~i~--tp~~~H~~~~~~a-l~~gk---hV~~EKPla~~~ 101 (387)
T 3moi_A 28 AQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIA--SPHQFHCEHVVQA-SEQGL---HIIVEKPLTLSR 101 (387)
T ss_dssp EEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEEC--SCGGGHHHHHHHH-HHTTC---EEEECSCCCSCH
T ss_pred EEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHCCCCCCEEEEC--CCCHHHHHHHHHH-HHHCC---CEECCCCCCCCH
T ss_conf 19999987999999999998599858999999659999889990--8967899999999-86189---565378887999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-----CCCEEEE-EECCCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf 56999999998649981898511442199999999862-----9987999-6416766675421169-899999999999
Q gi|254780579|r 105 GNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRIN-----STVQFIP-YPIISHDLEENSSIFK-IKILRVLLIEYL 177 (207)
Q Consensus 105 ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~-----p~i~i~~-~pv~~~~~~~~~Ww~~-~~~~~~~~~Ey~ 177 (207)
+++....+..++.|. .+.|-..+.-..+....++.. ..+..+- .-..+....+..||.. ...---++.+..
T Consensus 102 ~ea~~l~~~a~~~g~--~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~i~~~~~~~~~~~~~~~~~~~~~~ggG~l~d~~ 179 (387)
T 3moi_A 102 DEADRMIEAVERAGV--HLVVGTSRSHDPVVRTLRAIVQEGSVGRVSMLNCFNYTDFLYRPRRPEELDTSKGGGIIYNQL 179 (387)
T ss_dssp HHHHHHHHHHHHHTC--CEEECCCGGGSHHHHHHHHHHHHCTTCCEEEEEEEEECCGGGSCCCGGGGCGGGTCSHHHHTH
T ss_pred HHHHHHHHHHHHHCC--EEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999998099--489722233684899999987348866146655320367655664333344357887244510
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999876055
Q gi|254780579|r 178 KILLLSIQLSLST 190 (207)
Q Consensus 178 K~l~~~lr~~i~~ 190 (207)
=..+..++.-++.
T Consensus 180 ~H~id~~~~~~G~ 192 (387)
T 3moi_A 180 PHQIDSIKTITGQ 192 (387)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCC
T ss_conf 2079999998299
No 52
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=31.99 E-value=22 Score=14.66 Aligned_cols=115 Identities=3% Similarity=-0.063 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH--CC-CCEEE
Q ss_conf 5467899999876515886133220466666025699999999864998189851144219999999986--29-98799
Q gi|254780579|r 72 HSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRI--NS-TVQFI 148 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~--~p-~i~i~ 148 (207)
|.....+.... +.+.|. -|.+|+--..|.+++++..+..+++|..-.+--...||.+-....=+.. +. +--+.
T Consensus 75 p~~~H~~~~~~-al~~gk---~Vl~EKPla~s~~e~~~l~~~a~~~~~~~~v~~~~r~~~~~~~~~k~~i~~g~ig~~~~ 150 (336)
T 2p2s_A 75 IPCDRAELALR-TLDAGK---DFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQRGEIGRVIQ 150 (336)
T ss_dssp CGGGHHHHHHH-HHHTTC---EEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHHTTTTSSEEE
T ss_pred CHHHHHHHHHH-HHHCCC---EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCEEE
T ss_conf 82778999999-998599---08962785322320046899976303233344204412799999999876587564389
Q ss_pred EE--ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 96--4167666754211698999999999999999999876055
Q gi|254780579|r 149 PY--PIISHDLEENSSIFKIKILRVLLIEYLKILLLSIQLSLST 190 (207)
Q Consensus 149 ~~--pv~~~~~~~~~Ww~~~~~~~~~~~Ey~K~l~~~lr~~i~~ 190 (207)
.. ...........|+.+....--++.+..=..+..++.-+++
T Consensus 151 ~~~~~~~~~~~~~~~w~~~~~~~gg~l~~~g~H~id~~~~l~g~ 194 (336)
T 2p2s_A 151 TMGVGPHRERGARPDWFYQKRQYGGILCDIGIHQIEQFLYFTGN 194 (336)
T ss_dssp EEEEEECBCCSCCCGGGGCHHHHCCHHHHTHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98740456666676422230124652013002899999998599
No 53
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=31.64 E-value=23 Score=14.62 Aligned_cols=100 Identities=10% Similarity=-0.038 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEEEC
Q ss_conf 99999999689982451587654678---9999987651588613322046666602569-9999999864998189851
Q gi|254780579|r 51 ERAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNA-QEASAWAEKNNFHHVLIVT 126 (207)
Q Consensus 51 ~~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena-~~~~~~l~~~~~~~iiLVT 126 (207)
..+-.|+++|+....++.|.....+. .+..+....+.|.......... +..+.+.+ ....++++...--..++++
T Consensus 115 ~~~~~L~~~G~~~i~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 193 (291)
T 3egc_A 115 TAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAA-GGVRADNGRDGAIKVLTGADRPTALLTS 193 (291)
T ss_dssp HHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC-------CCHHHHHHHHTC-CCCSEEEES
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 999999976995698832774330588999999999998499843211236-7764557999999998559998510115
Q ss_pred CHHHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf 1442199999999862---9-98799964
Q gi|254780579|r 127 HDYHMPRTFLELQRIN---S-TVQFIPYP 151 (207)
Q Consensus 127 s~yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207)
++.-...+...++..+ | ++.++.+-
T Consensus 194 ~D~~A~g~~~al~~~g~~vP~di~vig~D 222 (291)
T 3egc_A 194 SHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp SHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 78999879999998389889986899967
No 54
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=30.78 E-value=24 Score=14.53 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999998765158861332204666660256999999998649981898511
Q gi|254780579|r 77 DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTH 127 (207)
Q Consensus 77 ~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs 127 (207)
...+.......+-+.+.++.-..|.+| .|..++.++.+++|.+.+.|...
T Consensus 118 ~~~f~~ql~~~~~~gDvli~iS~SG~s-~nvi~al~~Ak~~G~~ti~lTg~ 167 (212)
T 2i2w_A 118 NDIFSRYVEAVGREGDVLLGISTSGNS-ANVIKAIAAAREKGMKVITLTGK 167 (212)
T ss_dssp SSHHHHHHHHHCCTTCEEEEECSSSCC-HHHHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCC-CCHHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999857898879998089998-32899999999859989999778
No 55
>3lr0_A Sensor protein; niaid, seattle structural genomics center for infectious DIS ssgcid, PH, RISS, iodide phased, burkholder melioidosis; 1.90A {Burkholderia pseudomallei} PDB: 3lr3_A 3lr5_A 3lr4_A
Probab=30.70 E-value=18 Score=15.30 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=48.9
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 22046666602569999999986499818985114421999999998629987999641676667542116989999999
Q gi|254780579|r 94 IDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLL 173 (207)
Q Consensus 94 I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~~~~~~~Ww~~~~~~~~~~ 173 (207)
...|+++..|.+.+.-..++ .++-|+.|+.--||+++.==....|++|+|..- .+.+.+.+ +.
T Consensus 26 ~E~ePRA~q~Aqqi~SvVnl------TRaAL~~sd~~~R~~LL~~La~~EGVrIyP~ep-~D~~ep~p---~d------- 88 (143)
T 3lr0_A 26 IEREPRAQRVALQLVAIVKL------TRTALLYSDPDLRRALLQDLESNEGVRVYPREK-TDKFKLQP---DE------- 88 (143)
T ss_dssp ------CHHHHHHHHHHHHH------HHHHHHHCCGGGHHHHHHHHHHHHCCEEEECCT-TCCEECCC---SC-------
T ss_pred HHCCHHHHHHHHHHHHHHHH------HHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCC-CCCCCCCC---CC-------
T ss_conf 62381899999999999999------999998649778999999985569828956897-86555289---97-------
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999998760556766
Q gi|254780579|r 174 IEYLKILLLSIQLSLSTQTAS 194 (207)
Q Consensus 174 ~Ey~K~l~~~lr~~i~~~~~~ 194 (207)
.+...+...+|.+++++|.=
T Consensus 89 -~~~~~v~~el~~rLG~~TiV 108 (143)
T 3lr0_A 89 -SVNRLIEHDIRSRLGDDTVI 108 (143)
T ss_dssp -TTHHHHHHHHHHHHCTTCCE
T ss_pred -HHHHHHHHHHHHHCCCCCEE
T ss_conf -69999999999865999889
No 56
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=30.62 E-value=24 Score=14.52 Aligned_cols=10 Identities=40% Similarity=0.570 Sum_probs=3.7
Q ss_pred CCHHHHHHHH
Q ss_conf 6989999999
Q gi|254780579|r 164 FKIKILRVLL 173 (207)
Q Consensus 164 ~~~~~~~~~~ 173 (207)
..++..+.++
T Consensus 255 TrpedV~~L~ 264 (275)
T 3m6y_A 255 TKVEAVRELL 264 (275)
T ss_dssp BCHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 8999999999
No 57
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=30.61 E-value=24 Score=14.52 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=21.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 878999469857999999999968998245
Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIF 66 (207)
Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii 66 (207)
.| |||.|||+-=+..|.+|.+.|....|+
T Consensus 9 yD-VvIIGaG~AGl~aA~~l~~~g~~v~li 37 (325)
T 2q7v_A 9 YD-VVIIGGGPAGLTAAIYTGRAQLSTLIL 37 (325)
T ss_dssp EE-EEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CC-EEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 89-999998699999999999789978999
No 58
>3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=30.35 E-value=24 Score=14.49 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=52.7
Q ss_pred HHHHHHHHHHH---CCCCCEECCCCCCCCCHHHHHHHHHHHCCC-------------------CHHHEECCCCCCCHHHH
Q ss_conf 99999999996---899824515876546789999987651588-------------------61332204666660256
Q gi|254780579|r 49 RIERAFELLEN---QIGEKIFISGVHHSVSKDILLQKIPIRQDL-------------------AECCIDIGYKALNTEGN 106 (207)
Q Consensus 49 Ri~~a~~L~~~---g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i-------------------~~~~I~~e~~s~~T~en 106 (207)
-+++++++.-+ ....+|++.|.+...--++-+...+...|+ +.+.++.-..|-+|.|-
T Consensus 43 ~~e~~v~~i~~~i~~~~grI~~~GvG~S~~vA~~~~~kl~~lG~~~~~~~d~~~~~~~~~~~~~~DvlI~iS~SG~T~ev 122 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREI 122 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCCEEEEECCCCCCHHH
T ss_conf 79999999999997179969999704799999999999998399405278177888885158888889998289986658
Q ss_pred HHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 999999998649-981898511442199999999862998799964167
Q gi|254780579|r 107 AQEASAWAEKNN-FHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIIS 154 (207)
Q Consensus 107 a~~~~~~l~~~~-~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~ 154 (207)
.... +.+++.+ --.++.+|+....+-+. .+ |+.+. .|+..
T Consensus 123 i~~~-~~ak~~~~~~~vI~IT~~~~S~lak----~a--D~~L~-~~~~~ 163 (220)
T 3etn_A 123 VELT-QLAHNLNPGLKFIVITGNPDSPLAS----ES--DVCLS-TGHPA 163 (220)
T ss_dssp HHHH-HHHHHHCTTCEEEEEESCTTSHHHH----HS--SEEEE-CCCCC
T ss_pred HHHH-HHHHHCCCCCCEEEEEECCCCCCCC----CC--CEEEE-CCCCC
T ss_conf 8889-9987404687158886058874213----58--87886-79873
No 59
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=30.25 E-value=24 Score=14.48 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 789999987651588613322046666602569999999986499818985114421999999998
Q gi|254780579|r 75 SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQR 140 (207)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~ 140 (207)
...++... +.+.|. .|.+|+--..|.+++....+..++.|. .+.|-..++-.......++
T Consensus 162 ~H~~~~~~-al~aGk---hv~~EKP~a~~~~e~~~l~~~a~~~~~--~~~v~~~~r~~~~~~~~k~ 221 (433)
T 1h6d_A 162 LHAEFAIR-AFKAGK---HVMCEKPMATSVADCQRMIDAAKAANK--KLMIGYRCHYDPMNRAAVK 221 (433)
T ss_dssp GHHHHHHH-HHHTTC---EEEECSSCCSSHHHHHHHHHHHHHHTC--CEEECCGGGGCHHHHHHHH
T ss_pred HHHHHHHH-HHHCCC---EEEEECCCCCCCCCCCHHHHHHHHHCC--CEEECCCCCCCCCCCCCCC
T ss_conf 99999999-998799---199957841233323202466765240--1153121234763223321
No 60
>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} SCOP: c.23.17.1
Probab=30.20 E-value=24 Score=14.47 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=8.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHC
Q ss_conf 8999469857999999999968
Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQ 60 (207)
Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g 60 (207)
+|||.|-.+-=+.+-+++.++|
T Consensus 129 ~IvvIGNAPTAL~~l~elie~g 150 (218)
T 1v9c_A 129 AIVGVGNAPTFLLALVEAIRQG 150 (218)
T ss_dssp CEEEESSCTTTTHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHHCC
T ss_conf 6899807718999999998559
No 61
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=29.34 E-value=7.1 Score=17.74 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 6985799999999996899
Q gi|254780579|r 44 TGEPIRIERAFELLENQIG 62 (207)
Q Consensus 44 gGg~~Ri~~a~~L~~~g~~ 62 (207)
.-..+.+..|-+||.+..+
T Consensus 46 ~~~~~~v~~G~~Lf~~~Ca 64 (163)
T 1w5c_T 46 TLTEKQYLEGKRLFQYACA 64 (163)
T ss_dssp ECCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 7899999999999998669
No 62
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=29.32 E-value=25 Score=14.38 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 546789999987651588613322046666602569999999986499818985114421999999998
Q gi|254780579|r 72 HSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQR 140 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~ 140 (207)
+.....++.... .+.|. .|.+|+--..|.+++....+..++++.. +.+-...-+++ +...+++
T Consensus 74 p~~~H~~~~~~a-l~~gk---~V~~EKPla~~~~ea~~l~~~a~~~~~~-~~v~~~~r~~p-~~~~~k~ 136 (358)
T 3gdo_A 74 PSGLHYEHTMAC-IQAGK---HVVMEKPMTATAEEGETLKRAADEKGVL-LSVYHNRRWDN-DFLTIKK 136 (358)
T ss_dssp CTTTHHHHHHHH-HHTTC---EEEEESSCCSSHHHHHHHHHHHHHHTCC-EEEECGGGGSH-HHHHHHH
T ss_pred CHHHHHHHHHHH-HHCCC---EEEEECEEHHHHHHHHHHHHHHHHCCEE-EEEEECCCCCC-CCCCHHH
T ss_conf 768899999999-86599---8986120001036789999987624515-65410001366-4320233
No 63
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis}
Probab=28.21 E-value=26 Score=14.26 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=56.0
Q ss_pred HHHHHHCCC--CCCCCCCCCEEEEECC-CHH---HH-HHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 999972134--6765456878999469-857---99-9999999968998245158765467899999876515886133
Q gi|254780579|r 21 SFIRYVKQM--HIPDHPSVSAIVVLTG-EPI---RI-ERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC 93 (207)
Q Consensus 21 ~f~~~~~~~--~~~~~~~~DaIVVLgG-g~~---Ri-~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~ 93 (207)
-|...+... .....++.+-||++|- |.+ |+ ..|+.=+....-...++++.++. .....+......+..
T Consensus 125 ~f~~~i~~g~~~g~~g~~~~~vV~IGIGGS~LGp~~l~~al~~~~~~~~~~~fi~n~Dp~-----~~~~~l~~ld~~~Tl 199 (549)
T 2wu8_A 125 AFTDRLRSGEWTGATGKRISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNVDPA-----DLIATLADLDPATTL 199 (549)
T ss_dssp HHHHHHHHTCSBCSSSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHH-----HHHHHHTTCCGGGEE
T ss_pred HHHHHEECCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH-----HHHHHHHCCCCCCEE
T ss_conf 876765467162688983565999705520177999999985231368215537999869-----999998568965379
Q ss_pred EECCCCCCCHHHHH---HHHHHHHHHC-C---C-CEEEEECCHHHH
Q ss_conf 22046666602569---9999999864-9---9-818985114421
Q gi|254780579|r 94 IDIGYKALNTEGNA---QEASAWAEKN-N---F-HHVLIVTHDYHM 131 (207)
Q Consensus 94 I~~e~~s~~T~ena---~~~~~~l~~~-~---~-~~iiLVTs~yHm 131 (207)
+++-.+|-+|.|.. ...++|+.+. + . +.++.||++--.
T Consensus 200 fiviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~~vavt~~~~~ 245 (549)
T 2wu8_A 200 FIVASKTFSTLETLTNATAARRWLTDALGDAAVSRHFVAVSTNKRL 245 (549)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHHHHHHHCGGGGGGTEEEECSCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCHHH
T ss_conf 9997178896116899999999987505534432258982497799
No 64
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=27.98 E-value=26 Score=14.24 Aligned_cols=95 Identities=7% Similarity=-0.108 Sum_probs=42.4
Q ss_pred HHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCH
Q ss_conf 9999689982451587654678---9999987651588613322046666602569999999986---499818985114
Q gi|254780579|r 55 ELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEK---NNFHHVLIVTHD 128 (207)
Q Consensus 55 ~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~---~~~~~iiLVTs~ 128 (207)
.|.++|+....+++|....... .......+...+.......... .....+........+.. .+-...++++++
T Consensus 119 ~L~~~G~r~I~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d 197 (287)
T 3bbl_A 119 YLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILR-GEGTFEVGRAMTLHLLDLSPERRPTAIMTLND 197 (287)
T ss_dssp HHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEE-CCSSHHHHHHHHHHHHTSCTTTSCSEEEESSH
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 99974990799924897762456666789999997299743120013-56755689999999997466799759998877
Q ss_pred HHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf 42199999999862---9-9879996
Q gi|254780579|r 129 YHMPRTFLELQRIN---S-TVQFIPY 150 (207)
Q Consensus 129 yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207)
.....+...+++.+ | ++.++.+
T Consensus 198 ~~A~gv~~~l~~~g~~vp~disvig~ 223 (287)
T 3bbl_A 198 TMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 88899999999859998865023303
No 65
>1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5
Probab=26.12 E-value=28 Score=14.03 Aligned_cols=62 Identities=8% Similarity=0.156 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 67899999876515886133220466666025699999999864998189851144219999999986
Q gi|254780579|r 74 VSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRI 141 (207)
Q Consensus 74 ~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~ 141 (207)
....++... +.+.|. -+.+|+-...|.+++....+..++.|. .+.|...+.-..+...+++.
T Consensus 93 ~~H~~~~~~-al~agk---~Vl~EKP~~~~~~e~~~l~~~a~~~~~--~~~v~~~~R~~p~~~~~k~~ 154 (340)
T 1zh8_A 93 ELNLPFIEK-ALRKGV---HVICEKPISTDVETGKKVVELSEKSEK--TVYIAENFRHVPAFWKAKEL 154 (340)
T ss_dssp GGHHHHHHH-HHHTTC---EEEEESSSSSSHHHHHHHHHHHHHCSS--CEEEECGGGGCHHHHHHHHH
T ss_pred HHHHHHHHH-HHHCCC---CEEEECCCCCCCCHHHHHHHHHHHHCC--CCCCCCCEECCCHHHHHHHH
T ss_conf 345789999-986699---657636741321113466667765133--43222213038347899999
No 66
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle structural genomics center for infectious disease; 1.80A {Brucella abortus}
Probab=26.11 E-value=28 Score=14.03 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHH
Q ss_conf 87899946985799999999996899824515876546789
Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKD 77 (207)
Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~ 77 (207)
.++|||.|-.+-=+.+-++|.++|..++-++-|..-++-.+
T Consensus 131 ~~~IvvIGNAPTAL~~Lleli~~g~~~PalVIG~PVGFV~A 171 (212)
T 3e7d_A 131 EGSIVAIGNAPTALFRLFELLDAGAPKPALIIGMPVGFVGA 171 (212)
T ss_dssp TTCEEEESSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCH
T ss_conf 99889977884899999999864899872899808875176
No 67
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=25.98 E-value=29 Score=14.02 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=52.2
Q ss_pred HHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCC--HHHEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECC
Q ss_conf 99999689982451587654678---99999876515886--1332204666660256999999-998649981898511
Q gi|254780579|r 54 FELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLA--ECCIDIGYKALNTEGNAQEASA-WAEKNNFHHVLIVTH 127 (207)
Q Consensus 54 ~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~--~~~I~~e~~s~~T~ena~~~~~-~l~~~~~~~iiLVTs 127 (207)
-.|.++|.....+++|....... .+-++..+.+.|++ +..|.. ..++.+.+....+ +++...--..+++++
T Consensus 120 ~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~---~~~~~~~~~~~~~~~l~~~~~~~aii~~~ 196 (289)
T 3g85_A 120 LLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIA---AENSIHGGVDAAKKLMKLKNTPKALFCNS 196 (289)
T ss_dssp HHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEE---CCSSHHHHHHHHHHHTTSSSCCSEEEESS
T ss_pred HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE---CCCCCHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 999974997341145676783899998600367887299866314740---44321357898887763178865433178
Q ss_pred HHHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf 442199999999862---9-98799964
Q gi|254780579|r 128 DYHMPRTFLELQRIN---S-TVQFIPYP 151 (207)
Q Consensus 128 ~yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207)
+.-...+...++..+ | |+.+....
T Consensus 197 d~~a~g~~~al~~~g~~vP~DisV~~ig 224 (289)
T 3g85_A 197 DSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 4999999999998798669623999847
No 68
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=25.43 E-value=29 Score=13.95 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=15.3
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 999999864998189851144219999999986
Q gi|254780579|r 109 EASAWAEKNNFHHVLIVTHDYHMPRTFLELQRI 141 (207)
Q Consensus 109 ~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~ 141 (207)
..+++++.+.--+.++++++.....+....+..
T Consensus 171 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 203 (276)
T 3jy6_A 171 RLTQLITQNDQKTVAFALKERWLLEFFPNLIIS 203 (276)
T ss_dssp HHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHS
T ss_pred HHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHC
T ss_conf 999987640143301006679999999999986
No 69
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=25.42 E-value=29 Score=13.95 Aligned_cols=36 Identities=11% Similarity=-0.076 Sum_probs=27.1
Q ss_pred CCCCCEEEEECCCH----HHHHHHHHHHHHCCCCCEECCC
Q ss_conf 45687899946985----7999999999968998245158
Q gi|254780579|r 34 HPSVSAIVVLTGEP----IRIERAFELLENQIGEKIFISG 69 (207)
Q Consensus 34 ~~~~DaIVVLgGg~----~Ri~~a~~L~~~g~~~~ii~SG 69 (207)
....|+|+|.||-. +=...|++..|+..-|.+=+-.
T Consensus 88 L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~IPfLGICl 127 (289)
T 2v4u_A 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXL 127 (289)
T ss_dssp HHHCSEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 4348837968978877615899999999984997023567
No 70
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12}
Probab=25.04 E-value=30 Score=13.91 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=56.3
Q ss_pred HHHHHHHHHHCCCCCEECCCCCCCCCH---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEE
Q ss_conf 999999999689982451587654678---999998765158861332204666660256999-9999986499818985
Q gi|254780579|r 50 IERAFELLENQIGEKIFISGVHHSVSK---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQE-ASAWAEKNNFHHVLIV 125 (207)
Q Consensus 50 i~~a~~L~~~g~~~~ii~SG~~~~~~~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~-~~~~l~~~~~~~iiLV 125 (207)
...+-.++++|.....+++|....... .+.......+.++......+.. ...+.+.+.. ...+++...--..+++
T Consensus 128 ~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~ 206 (296)
T 3brq_A 128 FNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIAN-GKWTPASGAEGVEMLLERGAKFSALVA 206 (296)
T ss_dssp HHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEEC-CCSSHHHHHHHHHHHHTC--CCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC-CCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8889998763245039994687775057788899999998599876102431-554522078999999856888745885
Q ss_pred CCHHHHHHHHHHHHHHC---C-CCEEEEEE
Q ss_conf 11442199999999862---9-98799964
Q gi|254780579|r 126 THDYHMPRTFLELQRIN---S-TVQFIPYP 151 (207)
Q Consensus 126 Ts~yHm~RA~~~f~~~~---p-~i~i~~~p 151 (207)
+++.-...+...++... | ++.++.+-
T Consensus 207 ~~d~~A~g~~~~l~~~g~~iP~di~vig~D 236 (296)
T 3brq_A 207 SNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 685999999999997399898642010348
No 71
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Oleispira antarctica}
Probab=24.86 E-value=30 Score=13.89 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCEECC-----CCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99999999996899824515-----8765467899999876515886133220466666025699999999864998189
Q gi|254780579|r 49 RIERAFELLENQIGEKIFIS-----GVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVL 123 (207)
Q Consensus 49 Ri~~a~~L~~~g~~~~ii~S-----G~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~ii 123 (207)
++..-++-+|+.-.|.+++- +..+..-......+........+..+.+.+...|-+.+- ...++++++|+++++
T Consensus 39 ~i~~li~~ar~~g~pVi~~~~~~~~~~~~~~~~gt~g~~i~~~l~~~~~d~vi~K~~~saf~~t-~L~~~L~~~gi~~lv 117 (190)
T 3lqy_A 39 QGAKLLAKFRQQGLPVVHVRHEFPTDEAPFFLPGSDGAKIHPSVAAQEGEAVVLKHQINSFRDT-DLKKVLDDAGIKKLV 117 (190)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECC-CTTCSSSCTTCGGGSBCGGGCCCTTSCEEEESSSSTTTTS-SHHHHHHHC-CCEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCH-HHHHHHHHCCCCEEE
T ss_conf 9999999999749977999514788888755699983331673568888714775110545560-299998736977599
Q ss_pred EECCHHHH--HHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 85114421--999999998629987999641676
Q gi|254780579|r 124 IVTHDYHM--PRTFLELQRINSTVQFIPYPIISH 155 (207)
Q Consensus 124 LVTs~yHm--~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207)
++=-..|. .-+.......+-.+.+....+...
T Consensus 118 v~G~~T~~CV~~Ta~~a~~~gy~v~vv~Da~a~~ 151 (190)
T 3lqy_A 118 IVGAMTHMAIDAVTRAAEDLGYECAVAHDACATL 151 (190)
T ss_dssp EEEECTTTHHHHHHHHHHHHTCEEEEEEEEEEBC
T ss_pred EEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 8521237079999999998799799977100788
No 72
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=24.85 E-value=30 Score=13.89 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=17.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 999469857999999999968998245
Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIF 66 (207)
Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii 66 (207)
|||.|||+.=+..|..|.+.|....|+
T Consensus 4 vvIIGgGpaGl~aA~~l~~~g~~v~li 30 (310)
T 1fl2_A 4 VLIVGSGPAGAAAAIYSARKGIRTGLM 30 (310)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 899898899999999999789988999
No 73
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain, transport protein; NMR {Escherichia coli K12}
Probab=24.61 E-value=30 Score=13.86 Aligned_cols=42 Identities=5% Similarity=-0.019 Sum_probs=34.7
Q ss_pred CCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 588613322046666602569999999986499818985114
Q gi|254780579|r 87 QDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHD 128 (207)
Q Consensus 87 ~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~ 128 (207)
..-++..|.+.-.....|+......+.+++.|++++-|+|.+
T Consensus 53 ~~~~~~~V~i~aD~~~~y~~vv~vmd~~~~aG~~~v~l~T~~ 94 (99)
T 2pfu_A 53 EGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEE 94 (99)
T ss_dssp SSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTTCC
T ss_pred HCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 418997699984798878999999999998699769999578
No 74
>3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann-like fold, LEFT-handed-beta-helix, trimer, cell shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A*
Probab=24.38 E-value=31 Score=13.83 Aligned_cols=108 Identities=11% Similarity=0.133 Sum_probs=55.1
Q ss_pred EEEEECCCHH-H-----------------HHHHHHHHH-HCCCCCEECCCCCCCCCHHHHHHHH----HHHCCCCHHHEE
Q ss_conf 8999469857-9-----------------999999999-6899824515876546789999987----651588613322
Q gi|254780579|r 39 AIVVLTGEPI-R-----------------IERAFELLE-NQIGEKIFISGVHHSVSKDILLQKI----PIRQDLAECCID 95 (207)
Q Consensus 39 aIVVLgGg~~-R-----------------i~~a~~L~~-~g~~~~ii~SG~~~~~~~~~~~~~~----~~~~~i~~~~I~ 95 (207)
|+|||+||.+ | +++-++... .|....+++.|.. ++..+.+ ....+.. ..+.
T Consensus 8 ~vvILAaG~GtRl~p~~PK~LlPiankPlI~y~l~~l~~~g~~eIivv~~~~-----~~~i~~~i~~~~~~~~~~-i~~v 81 (495)
T 3dk5_A 8 AVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHD-----HQRIAPLVGELADTLGRT-IDVA 81 (495)
T ss_dssp EEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEESSC-----HHHHTTTTTTHHHHTTSC-CEEE
T ss_pred EEEEECCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHCCCCEEEEEECCC-----HHHHHHHHHHHHHHCCCC-EEEE
T ss_conf 5999777686548999977883788821999999999856998799995898-----899999998778763981-7999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH------HHHHHHHCCCCEEEEEEC
Q ss_conf 046666602569999999986499818985114421999------999998629987999641
Q gi|254780579|r 96 IGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT------FLELQRINSTVQFIPYPI 152 (207)
Q Consensus 96 ~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA------~~~f~~~~p~i~i~~~pv 152 (207)
.+.....|-+-.....+.+.......++++..+.+.-+. ...++....+..+...++
T Consensus 82 ~q~~~lGTadAl~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ti~~~~~ 144 (495)
T 3dk5_A 82 LQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTL 144 (495)
T ss_dssp ECSSCCCHHHHHHHHHTTSCTTCCSEEEEEESSCTTCCHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCEEEECHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 807989759999999986200356650232066013267899999876541455218875441
No 75
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3btu_A
Probab=24.18 E-value=31 Score=13.81 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=26.9
Q ss_pred HHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 33220466666025699999999864998189851144
Q gi|254780579|r 92 CCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDY 129 (207)
Q Consensus 92 ~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~y 129 (207)
.-|.+|+--..|.+++....+..+++|.. +.|...+
T Consensus 120 KhV~~EKPla~~~~ea~~l~~~a~~~~~~--~~v~~~~ 155 (438)
T 3btv_A 120 KYLFVEWALACSLDQAESIYKAAAERGVQ--TIISLQG 155 (438)
T ss_dssp CEEEEESSCCSSHHHHHHHHHHHHTTTCE--EEEECGG
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHCCCE--EEEEEEE
T ss_conf 45999177135577888999987613986--7773420
No 76
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=23.97 E-value=31 Score=13.78 Aligned_cols=29 Identities=10% Similarity=-0.036 Sum_probs=22.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 99946985799999999996899824515
Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207)
Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207)
|||+|||..=+..|..|.++|..-.|+=.
T Consensus 4 ivIIGaG~sGL~aA~~L~~~g~~V~vlEk 32 (367)
T 1i8t_A 4 YIIVGSGLFGAVCANELKKLNKKVLVIEK 32 (367)
T ss_dssp EEEECCSHHHHHHHHHHGGGTCCEEEECS
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99988838999999999968997799978
No 77
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=23.88 E-value=31 Score=13.77 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=20.0
Q ss_pred EEEEECCCHHHHHHHHHHHHH---CCCCCEECC
Q ss_conf 899946985799999999996---899824515
Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLEN---QIGEKIFIS 68 (207)
Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~---g~~~~ii~S 68 (207)
-|||+|||.-=-..|+-|.+. |..-.++=|
T Consensus 4 ~VvIvGgG~AG~~tAa~La~~~~~~~~VtliEs 36 (511)
T 2weu_A 4 SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVES 36 (511)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 699989878999999999986589987999968
No 78
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=23.44 E-value=32 Score=13.72 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=16.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 878999469857999999999968998
Q gi|254780579|r 37 VSAIVVLTGEPIRIERAFELLENQIGE 63 (207)
Q Consensus 37 ~DaIVVLgGg~~Ri~~a~~L~~~g~~~ 63 (207)
.| |+|.|||..=+..|..|.++|..-
T Consensus 17 ~~-V~IIGaGiaGL~aA~~L~~~G~~V 42 (478)
T 2ivd_A 17 MN-VAVVGGGISGLAVAHHLRSRGTDA 42 (478)
T ss_dssp CC-EEEECCBHHHHHHHHHHHTTTCCE
T ss_pred CC-EEEECCCHHHHHHHHHHHHCCCCE
T ss_conf 99-899898789999999998589988
No 79
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=23.40 E-value=32 Score=13.71 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=37.2
Q ss_pred EEEEECCCHH------HHHHHHHHHHHCCCCCEE-CC-CCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHH
Q ss_conf 8999469857------999999999968998245-15-876546789999987651588613322046666602569999
Q gi|254780579|r 39 AIVVLTGEPI------RIERAFELLENQIGEKIF-IS-GVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEA 110 (207)
Q Consensus 39 aIVVLgGg~~------Ri~~a~~L~~~g~~~~ii-~S-G~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~ 110 (207)
.+++-||+.+ =+.+=+++... ..++|+ +. .........+.......++|..... .+.-.++...++....
T Consensus 28 ~l~iiGG~ed~~~~~~i~~~~i~lagg-~~~~I~viptAS~~~~~~~~~y~~~f~~lG~~~v~-~l~i~~r~~A~~~~~~ 105 (291)
T 3en0_A 28 AILIIGGAEDKVHGREILQTFWSRSGG-NDAIIGIIPSASREPLLIGERYQTIFSDMGVKELK-VLDIRDRAQGDDSGYR 105 (291)
T ss_dssp CEEEECSSCCSSSCCHHHHHHHHHTTG-GGCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEE-ECCCCSGGGGGCHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHCCCHHHH
T ss_conf 599994988877869999999998399-98669999698788389999999999985996589-9944683664888999
Q ss_pred HHHHHHCCCCEEEEEC--CHHHHHHH
Q ss_conf 9999864998189851--14421999
Q gi|254780579|r 111 SAWAEKNNFHHVLIVT--HDYHMPRT 134 (207)
Q Consensus 111 ~~~l~~~~~~~iiLVT--s~yHm~RA 134 (207)
+.+++- ..+.++ +.+++.+.
T Consensus 106 -~~l~~A---d~I~~~GGdq~~l~~~ 127 (291)
T 3en0_A 106 -LFVEQC---TGIFMTGGDQLRLCGL 127 (291)
T ss_dssp -HHHHHC---SEEEECCSCHHHHHHH
T ss_pred -HHHHCC---CEEEECCCCHHHHHHH
T ss_conf -998519---9999948999999999
No 80
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=23.17 E-value=32 Score=13.69 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 54678999998765158861332204666660256999999998649981898511442199999999862
Q gi|254780579|r 72 HSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRIN 142 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~~ 142 (207)
+.....+.....+ +.|. .|.+|+--..|.++|....+..++++. .+.|...+.-..+...+++..
T Consensus 74 p~~~H~~~~~~al-~aGk---hV~~EKPla~~~~ea~~l~~~a~~~~~--~~~v~~~~r~~p~~~~~k~~i 138 (362)
T 3fhl_A 74 PDNTHYEYAGMAL-EAGK---NVVVEKPFTSTTKQGEELIALAKKKGL--MLSVYQNRRWDADFLTVRDIL 138 (362)
T ss_dssp CGGGHHHHHHHHH-HTTC---EEEEESSCCSSHHHHHHHHHHHHHHTC--CEEEECGGGGSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCCC---CCHHCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEEEECCHHHHHHHHHH
T ss_conf 9478899999999-7499---751028753122211157788763252--211101210202699999998
No 81
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032}
Probab=22.76 E-value=33 Score=13.64 Aligned_cols=61 Identities=3% Similarity=-0.036 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 7899999876515886133220466666025699999999864998189851144219999999986
Q gi|254780579|r 75 SKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRI 141 (207)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~~~ 141 (207)
...++.... .+.|. .|.+|+--..|.+++.+..+..++.+. .+.|-..+..-.+...+++.
T Consensus 77 ~h~~~~~~a-l~~gk---~Vl~EKP~a~~~~e~~~l~~~~~~~~~--~~~v~~~~R~~~~~~~~k~~ 137 (344)
T 3euw_A 77 THVDLITRA-VERGI---PALCEKPIDLDIEMVRACKEKIGDGAS--KVMLGFNRRFDPSFAAINAR 137 (344)
T ss_dssp GHHHHHHHH-HHTTC---CEEECSCSCSCHHHHHHHHHHHGGGGG--GEEECCGGGGCHHHHHHHHH
T ss_pred CHHHHHHHH-HHHCC---CEEECCCCCHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHH
T ss_conf 103567998-85137---511023220013456666665541333--22124312268789999998
No 82
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=22.71 E-value=33 Score=13.63 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCE-ECCC
Q ss_conf 5687899946985799999999996899824-5158
Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKI-FISG 69 (207)
Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~i-i~SG 69 (207)
.+++ |||.|||..=+..|..|-+.++...| +++.
T Consensus 6 m~~~-VVIIGgG~AGl~aA~~Lr~~~~~~~Itli~~ 40 (408)
T 2gqw_A 6 LKAP-VVVLGAGLASVSFVAELRQAGYQGLITVVGD 40 (408)
T ss_dssp CCSS-EEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred CCCC-EEEECCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 8899-9998988999999999965395880999969
No 83
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A*
Probab=22.54 E-value=33 Score=13.61 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=20.7
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 65456878999469857999999999968
Q gi|254780579|r 32 PDHPSVSAIVVLTGEPIRIERAFELLENQ 60 (207)
Q Consensus 32 ~~~~~~DaIVVLgGg~~Ri~~a~~L~~~g 60 (207)
..|..+|+ ||.|||--=+..|.+|.++|
T Consensus 5 ~~p~~~Dv-iIIGaGi~G~s~A~~La~~G 32 (381)
T 3nyc_A 5 HHPIEADY-LVIGAGIAGASTGYWLSAHG 32 (381)
T ss_dssp EEEEECSE-EEECCSHHHHHHHHHHTTTS
T ss_pred CCCCCCCE-EEECCCHHHHHHHHHHHHCC
T ss_conf 99793799-99992199999999999789
No 84
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.47 E-value=33 Score=13.60 Aligned_cols=98 Identities=9% Similarity=-0.088 Sum_probs=52.2
Q ss_pred HHHH-HHHHCCCCCEECCCCCCCC----C-H---HHHHHHHHHHCCCCHHHEECCCCCCCHHHHHH-HHHHHHHHCCCCE
Q ss_conf 9999-9996899824515876546----7-8---99999876515886133220466666025699-9999998649981
Q gi|254780579|r 52 RAFE-LLENQIGEKIFISGVHHSV----S-K---DILLQKIPIRQDLAECCIDIGYKALNTEGNAQ-EASAWAEKNNFHH 121 (207)
Q Consensus 52 ~a~~-L~~~g~~~~ii~SG~~~~~----~-~---~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~-~~~~~l~~~~~~~ 121 (207)
.+++ |+++|.....++.+..+.. . . .+-++....+.|.+........ .....+.+. ...++++...--+
T Consensus 104 ~~~~~L~~~g~~~i~~i~~~~~~~~~~~~~~~~R~~Gf~~a~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 182 (276)
T 2h0a_A 104 LAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYI-TRHSQEGGRLALRHFLEKASPPL 182 (276)
T ss_dssp HHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEE-ECSSHHHHHHHHHHHHTTCCSSE
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999987189626998247875012304899999999999998099977101111-11111579999999886356776
Q ss_pred EEEECCHHHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf 898511442199999999862---9-9879996
Q gi|254780579|r 122 VLIVTHDYHMPRTFLELQRIN---S-TVQFIPY 150 (207)
Q Consensus 122 iiLVTs~yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207)
.++++++.....+...+++.. | ++.++.+
T Consensus 183 aii~~~d~~a~g~~~al~~~g~~vp~~i~vvg~ 215 (276)
T 2h0a_A 183 NVFAGADQVALGVLEEAVRLGLTPGRDVRVLGF 215 (276)
T ss_dssp EEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 899677799999999999869988965311422
No 85
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme MNMG; 5-carboxymethylaminomethyl uridine, wobble uridine, FAD, FAD-binding protein; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=22.38 E-value=34 Score=13.59 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 5687899946985799999999996899824515
Q gi|254780579|r 35 PSVSAIVVLTGEPIRIERAFELLENQIGEKIFIS 68 (207)
Q Consensus 35 ~~~DaIVVLgGg~~Ri~~a~~L~~~g~~~~ii~S 68 (207)
.+.|+||| |||.-=.++|..+.+.|..-.++..
T Consensus 26 ~~~dViVI-GgGlAG~EAA~~~Ar~G~~v~L~em 58 (637)
T 2zxi_A 26 DEFDVVVI-GGGHAGIEAALAAARMGAKTAMFVL 58 (637)
T ss_dssp GCCSEEEE-CCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEE-CCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 66888998-9878999999999957998799972
No 86
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3e0w_A 3e0v_A
Probab=22.30 E-value=34 Score=13.58 Aligned_cols=32 Identities=6% Similarity=0.076 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 99999998649981898511442199999999
Q gi|254780579|r 108 QEASAWAEKNNFHHVLIVTHDYHMPRTFLELQ 139 (207)
Q Consensus 108 ~~~~~~l~~~~~~~iiLVTs~yHm~RA~~~f~ 139 (207)
..+.+...+-+.+-|+..|..=.+.|...-||
T Consensus 383 ~aav~~A~~~~akaIvv~T~sG~Ta~~iSk~R 414 (499)
T 3hqn_D 383 SSAVNSVYETKAKAMVVLSNTGRSARLVAKYR 414 (499)
T ss_dssp HHHHHHHHHHTCSEEEEECSSSHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC
T ss_conf 99999987247878999889848999999549
No 87
>2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus}
Probab=21.93 E-value=34 Score=13.53 Aligned_cols=113 Identities=14% Similarity=0.039 Sum_probs=61.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89994698579999999999689982451587654678999998765158861332204666660256999999998649
Q gi|254780579|r 39 AIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNN 118 (207)
Q Consensus 39 aIVVLgGg~~Ri~~a~~L~~~g~~~~ii~SG~~~~~~~~~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~~~~l~~~~ 118 (207)
+|-+|-+|..=.+.+.+++-....-.+.+.- ++...+.+.. +..-..+....+++-.--..|-..+..+-+.++++|
T Consensus 72 ~V~ILRaGl~m~~~~~~~~P~a~ig~i~i~r-d~~t~~p~~y--y~klP~~~~~~vlllDPmlATG~s~~~ai~~L~~~g 148 (208)
T 2e55_A 72 FVPILRAGLSFLEGALQVVPNAKVGFLGIKR-NEETLESHIY--YSRLPELKGKIVVILDPMLATGGTLEVALREILKHS 148 (208)
T ss_dssp EEEEETTTHHHHHHHHHHSTTCEECEEEEEE-CTTTCCEEEE--EEECCCCBTSEEEEECSEESSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCHHHHHHHHHCCCCCEEEEEECC-CCCCCCCEEH--HHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHHHCC
T ss_conf 9998245531777799748887346876225-7767871233--554553035706983467615715999999998448
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9818985114421999999998629987999641676
Q gi|254780579|r 119 FHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISH 155 (207)
Q Consensus 119 ~~~iiLVTs~yHm~RA~~~f~~~~p~i~i~~~pv~~~ 155 (207)
.++|++|| -.=.+-...-+.+.+|+++++...++..
T Consensus 149 ~~~I~~v~-~iaa~~Gl~~l~~~~P~v~I~ta~iD~~ 184 (208)
T 2e55_A 149 PLKVKSVH-AIAAPEGLKRIEEKFKEVEIFVGNVDER 184 (208)
T ss_dssp BSEEEEEE-EEECHHHHHHHHHHCTTSEEEEEEECSE
T ss_pred CCEEEEEE-EEECHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 86179999-9825999999998788968999983687
No 88
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.09 E-value=36 Score=13.43 Aligned_cols=98 Identities=9% Similarity=0.013 Sum_probs=58.4
Q ss_pred HHHHHHHCCCCCEECCCCCCCCCHH----HHHHHHHHHCCCCHHHEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEECC
Q ss_conf 9999996899824515876546789----999987651588613322046666602569999-99998649981898511
Q gi|254780579|r 53 AFELLENQIGEKIFISGVHHSVSKD----ILLQKIPIRQDLAECCIDIGYKALNTEGNAQEA-SAWAEKNNFHHVLIVTH 127 (207)
Q Consensus 53 a~~L~~~g~~~~ii~SG~~~~~~~~----~~~~~~~~~~~i~~~~I~~e~~s~~T~ena~~~-~~~l~~~~~~~iiLVTs 127 (207)
+-.|+++|.....++.+..+..... +-....+.+.+++............+.++.... ..++.+..--..+++++
T Consensus 179 ~~~L~~~G~r~i~~l~~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~ 258 (355)
T 3e3m_A 179 TNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVS 258 (355)
T ss_dssp HHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 99999769962999957887774099998716999998599942100224453023445666556875389997688567
Q ss_pred HHHHHHHHHHHHHHC---C-CCEEEEE
Q ss_conf 442199999999862---9-9879996
Q gi|254780579|r 128 DYHMPRTFLELQRIN---S-TVQFIPY 150 (207)
Q Consensus 128 ~yHm~RA~~~f~~~~---p-~i~i~~~ 150 (207)
+.....+...+++.+ | ++.++.+
T Consensus 259 d~~A~g~~~~l~~~g~~vP~disVig~ 285 (355)
T 3e3m_A 259 DMPAFGLLSRLKSIGVAVPEQVSVVGF 285 (355)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTCEEECS
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 799999999999859999984399997
No 89
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=20.73 E-value=36 Score=13.38 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 999469857999999999968998245
Q gi|254780579|r 40 IVVLTGEPIRIERAFELLENQIGEKIF 66 (207)
Q Consensus 40 IVVLgGg~~Ri~~a~~L~~~g~~~~ii 66 (207)
|||.|||..=+..|..|.++|..-.|+
T Consensus 42 V~IIGaG~aGLsaA~~L~k~G~~V~Vl 68 (495)
T 2vvm_A 42 VIVIGGGYCGLTATRDLTVAGFKTLLL 68 (495)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 899896889999999998689988999
No 90
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=20.50 E-value=37 Score=13.35 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=6.2
Q ss_pred EECCCHHHHHHHHHHHHHC
Q ss_conf 9469857999999999968
Q gi|254780579|r 42 VLTGEPIRIERAFELLENQ 60 (207)
Q Consensus 42 VLgGg~~Ri~~a~~L~~~g 60 (207)
|.|||..=+..|..|.++|
T Consensus 5 IIGaG~aGL~aA~~Lak~G 23 (421)
T 3nrn_A 5 VVGAGLGGLLAGAFLARNG 23 (421)
T ss_dssp EESCSHHHHHHHHHHHHTT
T ss_pred EECCCHHHHHHHHHHHHCC
T ss_conf 9997599999999999789
Done!