RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780579|ref|YP_003064992.1| hypothetical protein
CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)



>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional.
          Length = 320

 Score = 26.6 bits (59), Expect = 4.3
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 14/50 (28%)

Query: 15  FIMGFISFIRYVKQMHIP-DHPSVSAIVVLTG---EPIRIERAFELLENQ 60
           F MG           H+P DHP V A   L G    P ++E   EL+E  
Sbjct: 103 FDMGC----------HLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETH 142


>gnl|CDD|185656 PTZ00478, PTZ00478, Sec superfamily; Provisional.
          Length = 81

 Score = 26.6 bits (59), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 8  LFVCLI-FFIMGFISFIRYVKQMHIP 32
           + C + FFIMGFI +   +K + IP
Sbjct: 49 AYACSVGFFIMGFIGYS--IKLVFIP 72


>gnl|CDD|163199 TIGR03282, methan_mark_13, putative methanogenesis marker 13
           metalloprotein.  Members of this protein family, to
           date, are found in a completed prokaryotic genome if and
           only if the species is one of the archaeal methanogens.
           The exact function is unknown, but likely is linked to
           methanogenesis or a process closely connected to it.
           This metal cluster-binding family is related to
           nitrogenase structural protein NifD and accessory
           protein NifE, among others.
          Length = 352

 Score = 26.3 bits (58), Expect = 5.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 47  PIRIERAFELLENQIGEKIFISGVHHSV 74
           P+  E+A E++E++  +   I+GV H+V
Sbjct: 265 PVTGEKAAEIIEDEDPDFAVITGVPHAV 292


>gnl|CDD|147793 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846).
            This family consists of several of unknown function
           from a variety of eukaryotic organisms.
          Length = 140

 Score = 26.1 bits (58), Expect = 6.6
 Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 2   RYFWYGLFVC-LIFFIMGFISFIR 24
             FW  L+V  L + ++  I+ I 
Sbjct: 91  NLFWLALYVAPLFWVVLAIINLIS 114


>gnl|CDD|162012 TIGR00728, OPT_sfam, oligopeptide transporters, OPT superfamily.
           Homology between the two branches of the superfamily is
           seen most easily at the ends of the protein. The central
           regions are poorly conserved within each branch and may
           not be homologous between branches.
          Length = 654

 Score = 25.9 bits (57), Expect = 7.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 5   WYGLFVCLIFFIMGFI 20
           W+G+ V LI   +  I
Sbjct: 407 WWGVIVALIIAFVLAI 422


>gnl|CDD|162103 TIGR00913, 2A0310, amino acid permease (yeast). 
          Length = 478

 Score = 25.7 bits (57), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)

Query: 5   WYGLFVC-LIFFIMGFISFI 23
           +Y LF   LI    G+++F 
Sbjct: 415 YYALFFNILILIAQGYVAFA 434


>gnl|CDD|162465 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
            flippase.  This model describes the P-type ATPase
            responsible for transporting phospholipids from one
            leaflet of bilayer membranes to the other. These ATPases
            are found only in eukaryotes.
          Length = 1057

 Score = 25.8 bits (57), Expect = 8.4
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 3    YFWYGLFVCLIFFIMGFISFIRYVKQMHIPDH 34
             FW  L V ++  ++   ++    +    PD+
Sbjct: 1021 GFWLVLLVIVLISLLPRFTYKAIQRLFRPPDY 1052


>gnl|CDD|180655 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.
          Length = 390

 Score = 25.6 bits (57), Expect = 9.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 147 FIPYPIISHDLEENSSIFKIKILRVLLIEY 176
           FIP  +IS    E+ S FK K L V +IE 
Sbjct: 131 FIPASLISTRFVEDFSDFKGKTLEVKIIEL 160


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,358,111
Number of extensions: 210507
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 28
Length of query: 207
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,071,361
Effective search space: 480420598
Effective search space used: 480420598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)