RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62] (207 letters) >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 190 Score = 28.7 bits (63), Expect = 0.36 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTF-LELQRINS 143 IR DLAE + GY+ + G+ QEA AE + V++ D MPR ++ + Sbjct: 15 IRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIM---DVKMPRRDGIDAASEIA 71 Query: 144 TVQFIPYPIIS 154 + + P +++ Sbjct: 72 SKRIAPIVVLT 82 >d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 234 Score = 27.8 bits (61), Expect = 0.62 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 9/139 (6%) Query: 37 VSAIVVLTGEPIRIERAFELLEN-----QIGEKIFISGVHHSVSKDILLQKIPIRQDLAE 91 V+ V++ G+P R LL+N + + +G ++ + + + I Sbjct: 11 VAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYN--GETVSIATHGIGGPSIA 68 Query: 92 CCID--IGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIP 149 ++ A + N ++++ Y+ F + R N+ V P Sbjct: 69 IVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTP 128 Query: 150 YPIISHDLEENSSIFKIKI 168 +++ L + S +K Sbjct: 129 DFELTNKLVTSFSKRNLKY 147 >d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Score = 26.6 bits (59), Expect = 1.8 Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGEK 64 ++ IP S + +TG IE+A + E+ Sbjct: 42 KIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQ 78 >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Length = 549 Score = 25.9 bits (57), Expect = 2.3 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%) Query: 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC 93 P + TG+ + A LL + + +I + I R Sbjct: 114 VPMEDINLHFTGDIHAVTYAHNLLAAMVDNHL-----QQGNVLNIDPRTITWR-----RV 163 Query: 94 IDIGYKAL 101 ID+ +AL Sbjct: 164 IDLNERAL 171 >d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Length = 498 Score = 25.9 bits (57), Expect = 2.6 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 19 FISFIRYVKQMHIPDHPSVSAIVVL----TGEPIRIERAFE 55 F F ++VK+MH PS +AI + I I+ E Sbjct: 433 FELFKKFVKKMHADLDPSPNAISPAVLERSNSAITIDELME 473 >d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Score = 25.9 bits (57), Expect = 2.8 Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63 +H+P S I+ +TG ++RA L ++ E Sbjct: 42 NIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKE 77 >d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Score = 25.5 bits (56), Expect = 3.9 Identities = 8/36 (22%), Positives = 19/36 (52%) Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63 +++I + I+ L G I +AF ++ +++ E Sbjct: 36 RINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 71 >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118 Score = 25.3 bits (55), Expect = 3.9 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 10/81 (12%) Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT-----FLELQ 139 +R L + GY+ N +EA ++ V + D MP E+ Sbjct: 13 MRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTM---DITMPEMNGIDAIKEIM 69 Query: 140 RINSTVQFIPYPIISHDLEEN 160 +I+ + I + + Sbjct: 70 KIDPNAKII--VCSAMGQQAM 88 >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Length = 188 Score = 24.8 bits (54), Expect = 6.3 Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 147 FIPYPIISHDLEENSSIFK 165 P P++S LE+ S+ + Sbjct: 1 LTPEPLLSKHLEQAPSLME 19 >d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Score = 24.2 bits (52), Expect = 8.4 Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 9/52 (17%) Query: 21 SFIRYVKQM-----HIPDHPSVSA----IVVLTGEPIRIERAFELLENQIGE 63 IR + + + ++ ++G + A L+ ++ E Sbjct: 35 ETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 >d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]} Length = 437 Score = 24.0 bits (52), Expect = 8.9 Identities = 6/31 (19%), Positives = 14/31 (45%) Query: 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIF 66 S+ + + + ELLE+ + + +F Sbjct: 406 SLEKYALERSQIVNKSGRQELLESILNQYLF 436 >d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 Score = 24.1 bits (52), Expect = 9.0 Identities = 7/33 (21%), Positives = 19/33 (57%) Query: 32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEK 64 P + + +TG+P ++++A E++ I ++ Sbjct: 48 PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 80 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.328 0.142 0.420 Gapped Lambda K H 0.267 0.0638 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 795,207 Number of extensions: 35982 Number of successful extensions: 131 Number of sequences better than 10.0: 1 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 29 Length of query: 207 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 126 Effective length of database: 1,295,466 Effective search space: 163228716 Effective search space used: 163228716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 51 (23.6 bits)