RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780579|ref|YP_003064992.1| hypothetical protein
CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)



>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional
           regulator Rv1626 {Mycobacterium tuberculosis [TaxId:
           1773]}
          Length = 190

 Score = 28.7 bits (63), Expect = 0.36
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 85  IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTF-LELQRINS 143
           IR DLAE   + GY+ +   G+ QEA   AE +    V++   D  MPR   ++     +
Sbjct: 15  IRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIM---DVKMPRRDGIDAASEIA 71

Query: 144 TVQFIPYPIIS 154
           + +  P  +++
Sbjct: 72  SKRIAPIVVLT 82


>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 234

 Score = 27.8 bits (61), Expect = 0.62
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 37  VSAIVVLTGEPIRIERAFELLEN-----QIGEKIFISGVHHSVSKDILLQKIPIRQDLAE 91
           V+  V++ G+P R      LL+N     +    +  +G ++   + + +    I      
Sbjct: 11  VAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYN--GETVSIATHGIGGPSIA 68

Query: 92  CCID--IGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIP 149
             ++      A          +     N   ++++    Y+    F +  R N+ V   P
Sbjct: 69  IVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTP 128

Query: 150 YPIISHDLEENSSIFKIKI 168
              +++ L  + S   +K 
Sbjct: 129 DFELTNKLVTSFSKRNLKY 147


>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 81

 Score = 26.6 bits (59), Expect = 1.8
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGEK 64
          ++ IP     S  + +TG    IE+A   +     E+
Sbjct: 42 KIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQ 78


>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
           thermoacetica [TaxId: 1525]}
          Length = 549

 Score = 25.9 bits (57), Expect = 2.3
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)

Query: 34  HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC 93
            P     +  TG+   +  A  LL   +   +           +I  + I  R       
Sbjct: 114 VPMEDINLHFTGDIHAVTYAHNLLAAMVDNHL-----QQGNVLNIDPRTITWR-----RV 163

Query: 94  IDIGYKAL 101
           ID+  +AL
Sbjct: 164 IDLNERAL 171


>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
           [TaxId: 4120]}
          Length = 498

 Score = 25.9 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 19  FISFIRYVKQMHIPDHPSVSAIVVL----TGEPIRIERAFE 55
           F  F ++VK+MH    PS +AI       +   I I+   E
Sbjct: 433 FELFKKFVKKMHADLDPSPNAISPAVLERSNSAITIDELME 473


>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 91

 Score = 25.9 bits (57), Expect = 2.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
           +H+P     S I+ +TG    ++RA   L  ++ E
Sbjct: 42 NIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKE 77


>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 71

 Score = 25.5 bits (56), Expect = 3.9
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
          +++I +      I+ L G    I +AF ++ +++ E
Sbjct: 36 RINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 71


>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId:
           2336]}
          Length = 118

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 85  IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT-----FLELQ 139
           +R  L +     GY+      N +EA    ++     V +   D  MP         E+ 
Sbjct: 13  MRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTM---DITMPEMNGIDAIKEIM 69

Query: 140 RINSTVQFIPYPIISHDLEEN 160
           +I+   + I     +   +  
Sbjct: 70  KIDPNAKII--VCSAMGQQAM 88


>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 188

 Score = 24.8 bits (54), Expect = 6.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 147 FIPYPIISHDLEENSSIFK 165
             P P++S  LE+  S+ +
Sbjct: 1   LTPEPLLSKHLEQAPSLME 19


>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein,
          Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 104

 Score = 24.2 bits (52), Expect = 8.4
 Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 9/52 (17%)

Query: 21 SFIRYVKQM-----HIPDHPSVSA----IVVLTGEPIRIERAFELLENQIGE 63
            IR + +              +     ++ ++G    +  A  L+  ++ E
Sbjct: 35 ETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86


>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium
           thermosulfurogenes, also known as Thermoanaerobacter
           thermosulfurigenes [TaxId: 33950]}
          Length = 437

 Score = 24.0 bits (52), Expect = 8.9
 Identities = 6/31 (19%), Positives = 14/31 (45%)

Query: 36  SVSAIVVLTGEPIRIERAFELLENQIGEKIF 66
           S+    +   + +      ELLE+ + + +F
Sbjct: 406 SLEKYALERSQIVNKSGRQELLESILNQYLF 436


>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 81

 Score = 24.1 bits (52), Expect = 9.0
 Identities = 7/33 (21%), Positives = 19/33 (57%)

Query: 32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEK 64
          P +      + +TG+P ++++A E++   I ++
Sbjct: 48 PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 795,207
Number of extensions: 35982
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 29
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)