BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780579|ref|YP_003064992.1| hypothetical protein
CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 207
Score = 422 bits (1086), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MRYFWYGLFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQ 60
MRYFWYGLFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQ
Sbjct: 1 MRYFWYGLFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQ 60
Query: 61 IGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH 120
IGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH
Sbjct: 61 IGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH 120
Query: 121 HVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKIL 180
HVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKIL
Sbjct: 121 HVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKIL 180
Query: 181 LLSIQLSLSTQTASQFFITLIEEITVK 207
LLSIQLSLSTQTASQFFITLIEEITVK
Sbjct: 181 LLSIQLSLSTQTASQFFITLIEEITVK 207
>gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 206
Score = 26.9 bits (58), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 109 EASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPII 153
EAS AE++ + V HD +M TF+ RI S+++ +PYP+I
Sbjct: 155 EASQLAERD-VPEYISVNHD-NMVATFV---RIPSSLKDVPYPVI 194
>gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 242
Score = 26.9 bits (58), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 65 IFISGV---HHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHH 121
I ISG H +++ I+ + + I + ++L+T NAQ +S+ + +
Sbjct: 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175
Query: 122 VLIVTHDYHMPRTFLELQ 139
+++V+ YH+ R+ L Q
Sbjct: 176 IILVSSAYHLKRSQLYFQ 193
>gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 396
Score = 26.9 bits (58), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 46 EPIRIERAFELLENQIGEKIF------ISGVHHSVSKD 77
E I + E+ +N++GE+ F ++ HHS+ KD
Sbjct: 182 EEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKD 219
>gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
Length = 373
Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 18 GFI-SFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIF 66
GF+ S IR + + + P V I +TG I + AF+L +Q G +IF
Sbjct: 151 GFLLSLIRQMYYVGVSGVPVVILISFVTGAVIAQQGAFQL--SQFGAEIF 198
>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 236
Score = 23.1 bits (48), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 169 LRVLLIEYLKILLLSIQLSLSTQTASQFFITLIEE 203
+R+LLIE K L SI+L L ++ + + L E+
Sbjct: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED 35
>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 418
Score = 22.7 bits (47), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 111 SAWAEKNNFHH 121
+AWAE NNF H
Sbjct: 194 AAWAEHNNFLH 204
>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
[Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 22.7 bits (47), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 22 FIRYVKQMHIPDHPSVSAI--VVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDIL 79
F + K + +P +P I L G+ R + L++ + + F SG+ SV K I
Sbjct: 173 FDKIAKSLGLP-YPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSF-SGLKTSVQKTIC 230
Query: 80 LQKIPIRQDLAECC 93
+ +QD+A+ C
Sbjct: 231 AFDVLEKQDIADIC 244
>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 329
Score = 22.7 bits (47), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 8 LFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVL 43
L V +IF I+G I Y K + P V A++++
Sbjct: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.328 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,377
Number of Sequences: 1233
Number of extensions: 5264
Number of successful extensions: 19
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 10
length of query: 207
length of database: 328,796
effective HSP length: 70
effective length of query: 137
effective length of database: 242,486
effective search space: 33220582
effective search space used: 33220582
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 36 (18.5 bits)