Query         gi|254780581|ref|YP_003064994.1| hypothetical protein CLIBASIA_02340 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 16:10:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780581.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1wyz_A Putative S-adenosylmet  60.6     3.3 9.9E-05   22.4   1.1   14    3-16     17-30  (122)
  2 >3gre_A Serine/threonine-prote  16.6      56  0.0017   16.3   1.1   22    3-26      3-24  (53)
  3 >1lva_A Selenocysteine-specifi  12.0   1E+02   0.003   15.1   1.3   14   13-26     43-56  (60)
  4 >2v9v_A Selenocysteine-specifi  11.9   1E+02   0.003   15.1   1.3   14   13-26     43-56  (60)
  5 >2wax_B Enhancer of mRNA-decap   9.2      31 0.00091   17.6  -2.1   14   20-33     16-29  (44)
  6 >2k47_A Phosphoprotein, P prot   8.1 1.6E+02  0.0048   14.1   1.2   20    7-26     11-30  (79)
  7 >1urj_A Major DNA-binding prot   6.4      96  0.0028   15.2  -0.6   13   19-31     54-66  (366)
  8 >3hhw_A Phosphoprotein; protei   6.1 1.7E+02  0.0049   14.0   0.5   19    7-25     27-45  (87)
  9 >3l2t_A Integrase, IN, P42IN;    5.4   3E+02  0.0087   12.8   2.7   27    2-28     16-42  (167)
 10 >2v6e_A Protelemorase; hairpin   5.1 2.9E+02  0.0086   12.8   1.2   18    2-19     14-31  (64)

No 1  
>>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} (A:121-242)
Probab=60.61  E-value=3.3  Score=22.40  Aligned_cols=14  Identities=43%  Similarity=1.047  Sum_probs=11.6

Q ss_pred             CEEEEECCCCCCCC
Q ss_conf             30221105544574
Q gi|254780581|r    3 GFNFCGFLPKRAGD   16 (33)
Q Consensus         3 gfnfcgflpkragd   16 (33)
                      .|-|+||||+..++
T Consensus        17 ~f~F~GFlP~k~~~   30 (122)
T 1wyz_A           17 SFAFHGYLPIEPGE   30 (122)
T ss_dssp             SEEEEEECCSSTTH
T ss_pred             CCCCCEECCEECCC
T ss_conf             44310221121375


No 2  
>>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} (A:318-370)
Probab=16.61  E-value=56  Score=16.35  Aligned_cols=22  Identities=41%  Similarity=0.691  Sum_probs=16.0

Q ss_pred             CEEEEECCCCCCCCEEEEEEECCC
Q ss_conf             302211055445743689980674
Q gi|254780581|r    3 GFNFCGFLPKRAGDLSMLAVENDF   26 (33)
Q Consensus         3 gfnfcgflpkragdlsmlavendf   26 (33)
                      ..||||.-.-  ..||...|.||-
T Consensus         3 elnfcgirsl--nalstisvsndk   24 (53)
T 3gre_A            3 ELNFCGIRSL--NALSTISVSNDK   24 (53)
T ss_dssp             GCCCCCCCSG--GGGCCEEEETTE
T ss_pred             EEEEEECCCC--CEEEEEEECCCE
T ss_conf             3788506768--869999937996


No 3  
>>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:1-60)
Probab=12.00  E-value=1e+02  Score=15.10  Aligned_cols=14  Identities=50%  Similarity=0.864  Sum_probs=12.3

Q ss_pred             CCCCEEEEEEECCC
Q ss_conf             45743689980674
Q gi|254780581|r   13 RAGDLSMLAVENDF   26 (33)
Q Consensus        13 ragdlsmlavendf   26 (33)
                      .||....|.||||.
T Consensus        43 aagqvtllrvendl   56 (60)
T 1lva_A           43 AAGQVTLLRVENDL   56 (60)
T ss_dssp             HTTSEEEEEETTEE
T ss_pred             HCCCEEEEECCCCE
T ss_conf             47976899537955


No 4  
>>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} (A:1-60)
Probab=11.92  E-value=1e+02  Score=15.08  Aligned_cols=14  Identities=50%  Similarity=0.864  Sum_probs=12.2

Q ss_pred             CCCCEEEEEEECCC
Q ss_conf             45743689980674
Q gi|254780581|r   13 RAGDLSMLAVENDF   26 (33)
Q Consensus        13 ragdlsmlavendf   26 (33)
                      .||....|.||||.
T Consensus        43 aagqvtllrvendl   56 (60)
T 2v9v_A           43 AAGQVTLLRVENDL   56 (60)
T ss_dssp             HTTCEEEEEETTEE
T ss_pred             HCCCEEEEECCCCE
T ss_conf             48968998548973


No 5  
>>2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B (B:)
Probab=9.18  E-value=31  Score=17.65  Aligned_cols=14  Identities=50%  Similarity=0.629  Sum_probs=9.8

Q ss_pred             EEEECCCEEEEEEC
Q ss_conf             99806740457859
Q gi|254780581|r   20 LAVENDFEWNLMLF   33 (33)
Q Consensus        20 lavendfewnlmlf   33 (33)
                      +.-+-|||-||-||
T Consensus        16 l~~DFDFE~NLALF   29 (44)
T 2wax_B           16 PDTDFDFEGNLALF   29 (44)
T ss_dssp             CSSCCCHHHHHTTC
T ss_pred             CCCCCCCCHHHHHH
T ss_conf             34446731208887


No 6  
>>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus} (A:)
Probab=8.12  E-value=1.6e+02  Score=14.07  Aligned_cols=20  Identities=20%  Similarity=0.306  Sum_probs=13.5

Q ss_pred             EECCCCCCCCEEEEEEECCC
Q ss_conf             11055445743689980674
Q gi|254780581|r    7 CGFLPKRAGDLSMLAVENDF   26 (33)
Q Consensus         7 cgflpkragdlsmlavendf   26 (33)
                      --|.|||||.-.|..--.||
T Consensus        11 vqf~~kkagv~pltvtL~dl   30 (79)
T 2k47_A           11 MTFQPKKASLQPLTISLDEL   30 (79)
T ss_dssp             EEEEESSSSSCCEEEESGGG
T ss_pred             EEECCCCCCCCCCEEEHHHH
T ss_conf             77334326898726779997


No 7  
>>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication, zinc-finger, nuclear protein.; 3.0A {Human herpesvirus 1} (A:1-276,A:436-525)
Probab=6.41  E-value=96  Score=15.19  Aligned_cols=13  Identities=46%  Similarity=0.539  Sum_probs=9.8

Q ss_pred             EEEEECCCEEEEE
Q ss_conf             8998067404578
Q gi|254780581|r   19 MLAVENDFEWNLM   31 (33)
Q Consensus        19 mlavendfewnlm   31 (33)
                      -|.||.||++|..
T Consensus        54 GLTVE~~F~~nVk   66 (366)
T 1urj_A           54 GLTVESGFEANVA   66 (366)
T ss_dssp             TTTBCTTCCCEEE
T ss_pred             CCEECCCCCCCEE
T ss_conf             9524688742156


No 8  
>>3hhw_A Phosphoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 3hhz_A (A:)
Probab=6.10  E-value=1.7e+02  Score=14.02  Aligned_cols=19  Identities=21%  Similarity=0.303  Sum_probs=12.7

Q ss_pred             EECCCCCCCCEEEEEEECC
Q ss_conf             1105544574368998067
Q gi|254780581|r    7 CGFLPKRAGDLSMLAVEND   25 (33)
Q Consensus         7 cgflpkragdlsmlavend   25 (33)
                      .-|.|||||.-.|-.--.|
T Consensus        27 VQf~skkagvkpltVtL~D   45 (87)
T 3hhw_A           27 XTFQPKKASLQPLTISLDE   45 (87)
T ss_dssp             EEECBSSSSCCCEEEEHHH
T ss_pred             EEECCCCCCCCCCEEEHHH
T ss_conf             7732332688772666999


No 9  
>>3l2t_A Integrase, IN, P42IN; protein-DNA complex; HET: RLT; 2.85A {Human spumaretrovirus} PDB: 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* (A:113-279)
Probab=5.37  E-value=3e+02  Score=12.77  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=22.9

Q ss_pred             CCEEEEECCCCCCCCEEEEEEECCCEE
Q ss_conf             330221105544574368998067404
Q gi|254780581|r    2 YGFNFCGFLPKRAGDLSMLAVENDFEW   28 (33)
Q Consensus         2 ygfnfcgflpkragdlsmlavendfew   28 (33)
                      -+..|||-+|..-|.-..|.+-.||-.
T Consensus        16 i~iD~~Gplp~s~G~~yiLvvvD~~tk   42 (167)
T 3l2t_A           16 FFIDYIGPLPPSQGYLYVLVVVDGMTG   42 (167)
T ss_dssp             EEEEEECCCSCBTTBCEEEEEEETTTC
T ss_pred             EEECCCCCCCCCCCCEEEEEEECCCEE
T ss_conf             963466688767995599997435036


No 10 
>>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:298-361)
Probab=5.08  E-value=2.9e+02  Score=12.81  Aligned_cols=18  Identities=33%  Similarity=0.532  Sum_probs=14.9

Q ss_pred             CCEEEEECCCCCCCCEEE
Q ss_conf             330221105544574368
Q gi|254780581|r    2 YGFNFCGFLPKRAGDLSM   19 (33)
Q Consensus         2 ygfnfcgflpkragdlsm   19 (33)
                      |-.+|.|--.||.||-|-
T Consensus        14 ~~l~FsGQAKKR~~d~~~   31 (64)
T 2v6e_A           14 YTVTFLGQAKKRSEDKGI   31 (64)
T ss_dssp             SEEEEECCTTCCCCSCCC
T ss_pred             CEEEEEHHHHHCCCCCCC
T ss_conf             369983034323688887


Done!