Query gi|254780581|ref|YP_003064994.1| hypothetical protein CLIBASIA_02340 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 33 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 16:10:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780581.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1wyz_A Putative S-adenosylmet 60.6 3.3 9.9E-05 22.4 1.1 14 3-16 17-30 (122) 2 >3gre_A Serine/threonine-prote 16.6 56 0.0017 16.3 1.1 22 3-26 3-24 (53) 3 >1lva_A Selenocysteine-specifi 12.0 1E+02 0.003 15.1 1.3 14 13-26 43-56 (60) 4 >2v9v_A Selenocysteine-specifi 11.9 1E+02 0.003 15.1 1.3 14 13-26 43-56 (60) 5 >2wax_B Enhancer of mRNA-decap 9.2 31 0.00091 17.6 -2.1 14 20-33 16-29 (44) 6 >2k47_A Phosphoprotein, P prot 8.1 1.6E+02 0.0048 14.1 1.2 20 7-26 11-30 (79) 7 >1urj_A Major DNA-binding prot 6.4 96 0.0028 15.2 -0.6 13 19-31 54-66 (366) 8 >3hhw_A Phosphoprotein; protei 6.1 1.7E+02 0.0049 14.0 0.5 19 7-25 27-45 (87) 9 >3l2t_A Integrase, IN, P42IN; 5.4 3E+02 0.0087 12.8 2.7 27 2-28 16-42 (167) 10 >2v6e_A Protelemorase; hairpin 5.1 2.9E+02 0.0086 12.8 1.2 18 2-19 14-31 (64) No 1 >>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} (A:121-242) Probab=60.61 E-value=3.3 Score=22.40 Aligned_cols=14 Identities=43% Similarity=1.047 Sum_probs=11.6 Q ss_pred CEEEEECCCCCCCC Q ss_conf 30221105544574 Q gi|254780581|r 3 GFNFCGFLPKRAGD 16 (33) Q Consensus 3 gfnfcgflpkragd 16 (33) .|-|+||||+..++ T Consensus 17 ~f~F~GFlP~k~~~ 30 (122) T 1wyz_A 17 SFAFHGYLPIEPGE 30 (122) T ss_dssp SEEEEEECCSSTTH T ss_pred CCCCCEECCEECCC T ss_conf 44310221121375 No 2 >>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} (A:318-370) Probab=16.61 E-value=56 Score=16.35 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=16.0 Q ss_pred CEEEEECCCCCCCCEEEEEEECCC Q ss_conf 302211055445743689980674 Q gi|254780581|r 3 GFNFCGFLPKRAGDLSMLAVENDF 26 (33) Q Consensus 3 gfnfcgflpkragdlsmlavendf 26 (33) ..||||.-.- ..||...|.||- T Consensus 3 elnfcgirsl--nalstisvsndk 24 (53) T 3gre_A 3 ELNFCGIRSL--NALSTISVSNDK 24 (53) T ss_dssp GCCCCCCCSG--GGGCCEEEETTE T ss_pred EEEEEECCCC--CEEEEEEECCCE T ss_conf 3788506768--869999937996 No 3 >>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:1-60) Probab=12.00 E-value=1e+02 Score=15.10 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.3 Q ss_pred CCCCEEEEEEECCC Q ss_conf 45743689980674 Q gi|254780581|r 13 RAGDLSMLAVENDF 26 (33) Q Consensus 13 ragdlsmlavendf 26 (33) .||....|.||||. T Consensus 43 aagqvtllrvendl 56 (60) T 1lva_A 43 AAGQVTLLRVENDL 56 (60) T ss_dssp HTTSEEEEEETTEE T ss_pred HCCCEEEEECCCCE T ss_conf 47976899537955 No 4 >>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} (A:1-60) Probab=11.92 E-value=1e+02 Score=15.08 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.2 Q ss_pred CCCCEEEEEEECCC Q ss_conf 45743689980674 Q gi|254780581|r 13 RAGDLSMLAVENDF 26 (33) Q Consensus 13 ragdlsmlavendf 26 (33) .||....|.||||. T Consensus 43 aagqvtllrvendl 56 (60) T 2v9v_A 43 AAGQVTLLRVENDL 56 (60) T ss_dssp HTTCEEEEEETTEE T ss_pred HCCCEEEEECCCCE T ss_conf 48968998548973 No 5 >>2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B (B:) Probab=9.18 E-value=31 Score=17.65 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=9.8 Q ss_pred EEEECCCEEEEEEC Q ss_conf 99806740457859 Q gi|254780581|r 20 LAVENDFEWNLMLF 33 (33) Q Consensus 20 lavendfewnlmlf 33 (33) +.-+-|||-||-|| T Consensus 16 l~~DFDFE~NLALF 29 (44) T 2wax_B 16 PDTDFDFEGNLALF 29 (44) T ss_dssp CSSCCCHHHHHTTC T ss_pred CCCCCCCCHHHHHH T ss_conf 34446731208887 No 6 >>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus} (A:) Probab=8.12 E-value=1.6e+02 Score=14.07 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=13.5 Q ss_pred EECCCCCCCCEEEEEEECCC Q ss_conf 11055445743689980674 Q gi|254780581|r 7 CGFLPKRAGDLSMLAVENDF 26 (33) Q Consensus 7 cgflpkragdlsmlavendf 26 (33) --|.|||||.-.|..--.|| T Consensus 11 vqf~~kkagv~pltvtL~dl 30 (79) T 2k47_A 11 MTFQPKKASLQPLTISLDEL 30 (79) T ss_dssp EEEEESSSSSCCEEEESGGG T ss_pred EEECCCCCCCCCCEEEHHHH T ss_conf 77334326898726779997 No 7 >>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication, zinc-finger, nuclear protein.; 3.0A {Human herpesvirus 1} (A:1-276,A:436-525) Probab=6.41 E-value=96 Score=15.19 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=9.8 Q ss_pred EEEEECCCEEEEE Q ss_conf 8998067404578 Q gi|254780581|r 19 MLAVENDFEWNLM 31 (33) Q Consensus 19 mlavendfewnlm 31 (33) -|.||.||++|.. T Consensus 54 GLTVE~~F~~nVk 66 (366) T 1urj_A 54 GLTVESGFEANVA 66 (366) T ss_dssp TTTBCTTCCCEEE T ss_pred CCEECCCCCCCEE T ss_conf 9524688742156 No 8 >>3hhw_A Phosphoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 3hhz_A (A:) Probab=6.10 E-value=1.7e+02 Score=14.02 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=12.7 Q ss_pred EECCCCCCCCEEEEEEECC Q ss_conf 1105544574368998067 Q gi|254780581|r 7 CGFLPKRAGDLSMLAVEND 25 (33) Q Consensus 7 cgflpkragdlsmlavend 25 (33) .-|.|||||.-.|-.--.| T Consensus 27 VQf~skkagvkpltVtL~D 45 (87) T 3hhw_A 27 XTFQPKKASLQPLTISLDE 45 (87) T ss_dssp EEECBSSSSCCCEEEEHHH T ss_pred EEECCCCCCCCCCEEEHHH T ss_conf 7732332688772666999 No 9 >>3l2t_A Integrase, IN, P42IN; protein-DNA complex; HET: RLT; 2.85A {Human spumaretrovirus} PDB: 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* (A:113-279) Probab=5.37 E-value=3e+02 Score=12.77 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=22.9 Q ss_pred CCEEEEECCCCCCCCEEEEEEECCCEE Q ss_conf 330221105544574368998067404 Q gi|254780581|r 2 YGFNFCGFLPKRAGDLSMLAVENDFEW 28 (33) Q Consensus 2 ygfnfcgflpkragdlsmlavendfew 28 (33) -+..|||-+|..-|.-..|.+-.||-. T Consensus 16 i~iD~~Gplp~s~G~~yiLvvvD~~tk 42 (167) T 3l2t_A 16 FFIDYIGPLPPSQGYLYVLVVVDGMTG 42 (167) T ss_dssp EEEEEECCCSCBTTBCEEEEEEETTTC T ss_pred EEECCCCCCCCCCCCEEEEEEECCCEE T ss_conf 963466688767995599997435036 No 10 >>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:298-361) Probab=5.08 E-value=2.9e+02 Score=12.81 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.9 Q ss_pred CCEEEEECCCCCCCCEEE Q ss_conf 330221105544574368 Q gi|254780581|r 2 YGFNFCGFLPKRAGDLSM 19 (33) Q Consensus 2 ygfnfcgflpkragdlsm 19 (33) |-.+|.|--.||.||-|- T Consensus 14 ~~l~FsGQAKKR~~d~~~ 31 (64) T 2v6e_A 14 YTVTFLGQAKKRSEDKGI 31 (64) T ss_dssp SEEEEECCTTCCCCSCCC T ss_pred CEEEEEHHHHHCCCCCCC T ss_conf 369983034323688887 Done!