HHsearch alignment for GI: 254780582 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=95.63 E-value=0.053 Score=31.48 Aligned_cols=87 Identities=10% Similarity=0.019 Sum_probs=54.7
Q ss_pred CHHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HCCCCEEEEEECHHHHHHHHHCCC----CCEEEECH
Q ss_conf 88989999--999999997501048975999653881113553-123874887305899983231168----62365333
Q gi|254780582|r 14 SFLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GKVERTLAFMPAGQGATNWPDQYF----SSTALVSE 86 (242)
Q Consensus 14 s~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~ 86 (242)
T Consensus 6 K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da 85 (259)
T COG0030 6 KRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA 85 (259)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 77664541478799999985578999869997898778899999606957999968899999997506566559994724
Q ss_pred HHCCCCCC-CCCCHH
Q ss_conf 65677547-202002
Q gi|254780582|r 87 GNLPLADS-SVDCVL 100 (242)
Q Consensus 87 ~~LPf~~~-sfD~Vi 100 (242)
T Consensus 86 Lk~d~~~l~~~~~vV 100 (259)
T COG0030 86 LKFDFPSLAQPYKVV 100 (259)
T ss_pred HCCCCHHHCCCCEEE
T ss_conf 247513515788899