HHsearch alignment for GI: 254780582 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=96.21 E-value=0.05 Score=31.64 Aligned_cols=168 Identities=15% Similarity=0.075 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHH----HHHHHCCCC-EEEEEECHHHHHHHH---HCCCC---CEEEECHHHCC---
Q ss_conf 99999750104897599965388111----355312387-488730589998323---11686---23653336567---
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFF----SCFHGKVER-TLAFMPAGQGATNWP---DQYFS---STALVSEGNLP--- 90 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~----~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~---~~~~~d~~~LP--- 90 (242)
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 76679971999979688807999769999999668998769974498789999999999719983489951330143113
Q ss_pred CCCCCCCCHHH----------------------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCC
Q ss_conf 75472020022----------------------02477522999999999984699988999733877403456532766
Q gi|254780582|r 91 LADSSVDCVLM----------------------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFG 148 (242)
Q Consensus 91 f~~~sfD~Vi~----------------------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~ 148 (242)
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e---------- 294 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE---------- 294 (355)
T ss_pred CCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH----------
T ss_conf 4557778599879998771133581232038999999999999999999998448798899990237500----------
Q ss_pred CCCCCCHHHHHHHHHHC-CCCCEEEEEE--EEECCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEEEEEEEE
Q ss_conf 56557888999999962-8762125789--83086552467631589999997611321---43899999975
Q gi|254780582|r 149 SGQPYSWYQMISLLREA-NFTLSITSRS--LFFPPTHKKCILKLWSVFEKIGNIFGPGF---AGIYVIEARKI 215 (242)
Q Consensus 149 ~~r~~~~~~l~~~l~~~-gf~~~~~~~~--~~~pp~~~~~~~~~~~~~e~~~~~~~p~~---g~~~~i~a~K~ 215 (242)
T Consensus 295 ----ENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 295 ----ENEEVVERFLERHPDFELEPVRLPWGPLFEGLG---------SELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred ----CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC---------CCCCCEEEECCCCCCCCCEEEEEEEEC
T ss_conf ----288999999985899544114455444444445---------455661786787789786799999967