HHsearch alignment for GI: 254780582 and conserved domain: COG0144

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=96.21  E-value=0.05  Score=31.64  Aligned_cols=168  Identities=15%  Similarity=0.075  Sum_probs=89.8

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHH----HHHHHCCCC-EEEEEECHHHHHHHH---HCCCC---CEEEECHHHCC---
Q ss_conf             99999750104897599965388111----355312387-488730589998323---11686---23653336567---
Q gi|254780582|r   25 SKVLSTTWDDVTGCRLLGLGYAIPFF----SCFHGKVER-TLAFMPAGQGATNWP---DQYFS---STALVSEGNLP---   90 (242)
Q Consensus        25 ~~~l~~~l~~~~g~~vLdiGcg~g~~----~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~---~~~~~d~~~LP---   90 (242)
T Consensus       145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~  224 (355)
T COG0144         145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL  224 (355)
T ss_pred             HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf             76679971999979688807999769999999668998769974498789999999999719983489951330143113


Q ss_pred             CCCCCCCCHHH----------------------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCC
Q ss_conf             75472020022----------------------02477522999999999984699988999733877403456532766
Q gi|254780582|r   91 LADSSVDCVLM----------------------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFG  148 (242)
Q Consensus        91 f~~~sfD~Vi~----------------------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~  148 (242)
T Consensus       225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e----------  294 (355)
T COG0144         225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE----------  294 (355)
T ss_pred             CCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH----------
T ss_conf             4557778599879998771133581232038999999999999999999998448798899990237500----------


Q ss_pred             CCCCCCHHHHHHHHHHC-CCCCEEEEEE--EEECCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEEEEEEEE
Q ss_conf             56557888999999962-8762125789--83086552467631589999997611321---43899999975
Q gi|254780582|r  149 SGQPYSWYQMISLLREA-NFTLSITSRS--LFFPPTHKKCILKLWSVFEKIGNIFGPGF---AGIYVIEARKI  215 (242)
Q Consensus       149 ~~r~~~~~~l~~~l~~~-gf~~~~~~~~--~~~pp~~~~~~~~~~~~~e~~~~~~~p~~---g~~~~i~a~K~  215 (242)
T Consensus       295 ----ENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~~p~~~~~dGFFia~l~k~  354 (355)
T COG0144         295 ----ENEEVVERFLERHPDFELEPVRLPWGPLFEGLG---------SELGKTRRLYPHVHGTDGFFIAKLRKK  354 (355)
T ss_pred             ----CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC---------CCCCCEEEECCCCCCCCCEEEEEEEEC
T ss_conf             ----288999999985899544114455444444445---------455661786787789786799999967