HHsearch alignment for GI: 254780582 and conserved domain: PRK04266
>PRK04266 fibrillarin; Provisional.
Probab=96.48 E-value=0.0083 Score=36.10 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=89.4
Q ss_pred HHHHHH--HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHH---HH-HC
Q ss_conf 899996--128898999999999999750104897599965388111355312---3874887305899983---23-11
Q gi|254780582|r 6 VELRQF--YSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATN---WP-DQ 76 (242)
Q Consensus 6 ~~l~~w--Y~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~---~~-~~ 76 (242)
T Consensus 45 ~EyR~W~P~RSKLaAail~----g~~-~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R 119 (226)
T PRK04266 45 EEYREWNPRRSKLAAAILN----GLK-NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER 119 (226)
T ss_pred EEEEEECCCCCHHHHHHHC----CCC-CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf 4866578872199999976----975-56758998799954777984888987517964999982707789999998508
Q ss_pred CCCCEEEECH---HHC-CCCCCCCCCHHHHHHHHHHCCHHH---HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 6862365333---656-775472020022024775229999---999999846999889997338774034565327665
Q gi|254780582|r 77 YFSSTALVSE---GNL-PLADSSVDCVLMVHYLEFAEDPFL---MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149 (242)
Q Consensus 77 ~~~~~~~~d~---~~L-Pf~~~sfD~Vi~~h~LE~~~dp~~---~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~ 149 (242)
T Consensus 120 ~NivPIl~DAr~P~~Y~~~v-~~VD~i~qD-----vAQ~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~----- 188 (226)
T PRK04266 120 KNIIPILGDARKPEEYAHLV-EKVDVIYQD-----VAQPNQAEIAADNADIFLKPGGYLMLAIKARSIDVTKDPK----- 188 (226)
T ss_pred CCCEEEECCCCCHHHHHHHC-CCCCEEEEE-----CCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHH-----
T ss_conf 99625754678845644205-656589960-----6774289999999998601598899999742356468989-----
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6557888999999962876212578
Q gi|254780582|r 150 GQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 150 ~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
T Consensus 189 ---~vf~~~~~~L~~~~~~~~e~i~ 210 (226)
T PRK04266 189 ---EIFKEEIKKLEEGGFEILEVVD 210 (226)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEEE
T ss_conf ---9999999999876996689981