HHsearch alignment for GI: 254780582 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=94.85 E-value=0.19 Score=28.32 Aligned_cols=116 Identities=6% Similarity=-0.087 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHCCCCEEEEEE-CHHHHHHHHH------CCCCCEEEECHH
Q ss_conf 989999999999997501048975999653881113-55312387488730-5899983231------168623653336
Q gi|254780582|r 16 LGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFS-CFHGKVERTLAFMP-AGQGATNWPD------QYFSSTALVSEG 87 (242)
Q Consensus 16 ~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~d~~ 87 (242)
T Consensus 35 T~drvREalFn~L~~---~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~ 111 (198)
T PRK10909 35 TTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNAL 111 (198)
T ss_pred CCHHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 838899999987576---42998799827774688999998799789999789999999999999848886799955699
Q ss_pred H-CCCCCCCCCCHHHHHHHHHHCCHHHHHHHH--HHHCCCCCEEEEEECCC
Q ss_conf 5-677547202002202477522999999999--98469998899973387
Q gi|254780582|r 88 N-LPLADSSVDCVLMVHYLEFAEDPFLMLHEI--WRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 88 ~-LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei--~RvLkPgG~lii~~~n~ 135 (242)
T Consensus 112 ~~L~~~~~~fDlIF~DPPY~~-~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 161 (198)
T PRK10909 112 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEQNGWLADDALIYVESEVE 161 (198)
T ss_pred HHHHCCCCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 986255995218998999765-55999999999888918996999995488