HHsearch alignment for GI: 254780582 and conserved domain: PRK11188
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=96.69 E-value=0.019 Score=34.06 Aligned_cols=97 Identities=21% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHC--------CCCCCCCCCHHHH
Q ss_conf 4897599965388111355312----387488730589998323116862365333656--------7754720200220
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYFSSTALVSEGNL--------PLADSSVDCVLMV 102 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L--------Pf~~~sfD~Vi~~ 102 (242)
T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~DvVlSD 124 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVDVVMSD 124 (209)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEECC
T ss_conf 789989980689975789999973999739998653045-----378967640344588999999998589873089666
Q ss_pred H--------HHHHHC---CHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2--------477522---999999999984699988999733877
Q gi|254780582|r 103 H--------YLEFAE---DPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 103 h--------~LE~~~---dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
T Consensus 125 mAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~ 169 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 665667870335999999999999999986267988999996487