HHsearch alignment for GI: 254780582 and conserved domain: PRK11188

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=96.69  E-value=0.019  Score=34.06  Aligned_cols=97  Identities=21%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             CCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHC--------CCCCCCCCCHHHH
Q ss_conf             4897599965388111355312----387488730589998323116862365333656--------7754720200220
Q gi|254780582|r   35 VTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYFSSTALVSEGNL--------PLADSSVDCVLMV  102 (242)
Q Consensus        35 ~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L--------Pf~~~sfD~Vi~~  102 (242)
T Consensus        50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~DvVlSD  124 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVDVVMSD  124 (209)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEECC
T ss_conf             789989980689975789999973999739998653045-----378967640344588999999998589873089666


Q ss_pred             H--------HHHHHC---CHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             2--------477522---999999999984699988999733877
Q gi|254780582|r  103 H--------YLEFAE---DPFLMLHEIWRVLTSGGRMIVVVPNKR  136 (242)
Q Consensus       103 h--------~LE~~~---dp~~~L~Ei~RvLkPgG~lii~~~n~~  136 (242)
T Consensus       125 mAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~  169 (209)
T PRK11188        125 MAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             665667870335999999999999999986267988999996487