HHsearch alignment for GI: 254780582 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=94.18 E-value=0.16 Score=28.71 Aligned_cols=79 Identities=6% Similarity=-0.042 Sum_probs=49.0
Q ss_pred HHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCC----CCCEEEECHH
Q ss_conf 8989999--9999999975010489759996538811135531-2387488730589998323116----8623653336
Q gi|254780582|r 15 FLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQY----FSSTALVSEG 87 (242)
Q Consensus 15 ~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~ 87 (242)
T Consensus 7 ~lGQnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~ii~~D~l 86 (258)
T pfam00398 7 SYGQNFLTNKKVINRIVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLALHPNVEVVHQDFL 86 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 67753138999999999970899999799979962399999996169479995447799999986442897799966301
Q ss_pred HCCCCC
Q ss_conf 567754
Q gi|254780582|r 88 NLPLAD 93 (242)
Q Consensus 88 ~LPf~~ 93 (242)
T Consensus 87 ~~d~~~ 92 (258)
T pfam00398 87 KFSFPK 92 (258)
T ss_pred CCCCCC
T ss_conf 057545