HHsearch alignment for GI: 254780582 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=96.50 E-value=0.014 Score=34.86 Aligned_cols=95 Identities=21% Similarity=0.022 Sum_probs=54.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCCCCCEEEECHHHC-------CCCCCCCCCHHHHHH
Q ss_conf 48975999653881113553123---87488730589998323116862365333656-------775472020022024
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYFSSTALVSEGNL-------PLADSSVDCVLMVHY 104 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L-------Pf~~~sfD~Vi~~h~ 104 (242)
T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~-----~~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~sD~a 94 (176)
T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM-----KPIQGVTFLRGDITDPETLEKLLELLPGKVDLVLCDGA 94 (176)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC-----CCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 7999999968999769999998566873999973446-----56778456516766878999999973998468973366
Q ss_pred H-----------HHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 7-----------75229999999999846999889997338
Q gi|254780582|r 105 L-----------EFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 105 L-----------E~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
T Consensus 95 ~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~ 135 (176)
T pfam01728 95 PNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFK 135 (176)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 56567733478999999999999999982437639999982