HHsearch alignment for GI: 254780582 and conserved domain: pfam01728

>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=96.50  E-value=0.014  Score=34.86  Aligned_cols=95  Identities=21%  Similarity=0.022  Sum_probs=54.6

Q ss_pred             CCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCCCCCEEEECHHHC-------CCCCCCCCCHHHHHH
Q ss_conf             48975999653881113553123---87488730589998323116862365333656-------775472020022024
Q gi|254780582|r   35 VTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYFSSTALVSEGNL-------PLADSSVDCVLMVHY  104 (242)
Q Consensus        35 ~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L-------Pf~~~sfD~Vi~~h~  104 (242)
T Consensus        20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~-----~~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~sD~a   94 (176)
T pfam01728        20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM-----KPIQGVTFLRGDITDPETLEKLLELLPGKVDLVLCDGA   94 (176)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC-----CCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             7999999968999769999998566873999973446-----56778456516766878999999973998468973366


Q ss_pred             H-----------HHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             7-----------75229999999999846999889997338
Q gi|254780582|r  105 L-----------EFAEDPFLMLHEIWRVLTSGGRMIVVVPN  134 (242)
Q Consensus       105 L-----------E~~~dp~~~L~Ei~RvLkPgG~lii~~~n  134 (242)
T Consensus        95 ~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~  135 (176)
T pfam01728        95 PNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFK  135 (176)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             56567733478999999999999999982437639999982