HHsearch alignment for GI: 254780582 and conserved domain: pfam01739

>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=97.68  E-value=0.00033  Score=44.10  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=59.6

Q ss_pred             CCCEEEEECCCCCH----HHHHHHCC--------CCEEEEEECHHHHHHHHHCC----------------------CCCE
Q ss_conf             89759996538811----13553123--------87488730589998323116----------------------8623
Q gi|254780582|r   36 TGCRLLGLGYAIPF----FSCFHGKV--------ERTLAFMPAGQGATNWPDQY----------------------FSST   81 (242)
Q Consensus        36 ~g~~vLdiGcg~g~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----------------------~~~~   81 (242)
T Consensus        30 ~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~~  109 (194)
T pfam01739        30 RRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGGY  109 (194)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCE
T ss_conf             95599973688995189999999997432578744999973988999999878988999845999999962860789948


Q ss_pred             ------------EEECHHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             ------------6533365677547202002202477522--99999999998469998899973
Q gi|254780582|r   82 ------------ALVSEGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVV  132 (242)
Q Consensus        82 ------------~~~d~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~  132 (242)
T Consensus       110 ~i~~~lr~~V~F~~~NL~~~~~-~~~~DlIfCRNVlIYF~~~~~~~vl~~l~~~L~~gG~L~lG~  173 (194)
T pfam01739       110 RVKPEIKEMVLFEYHNLLDYPP-LGDFDVIFCRNVLIYFDEETQRKILNRFASALKPGGYLFLGH  173 (194)
T ss_pred             EECHHHHCCCEEEECCCCCCCC-CCCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             7688997116685466556887-675039998021013799999999999999848994999807