HHsearch alignment for GI: 254780582 and conserved domain: pfam05958
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=93.21 E-value=0.4 Score=26.47 Aligned_cols=63 Identities=17% Similarity=0.033 Sum_probs=39.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHH
Q ss_conf 996128898999999999999750104897599965388111355312-387488730589998323
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWP 74 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (242)
T Consensus 173 ~sFfQvN~~~--~~~l~~~a~~~~~~~~~-~vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~ 236 (353)
T pfam05958 173 NSFTQPNAAV--NIKMLEWACEVTQGSKG-DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CCEECCCHHH--HHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHH
T ss_conf 9977869899--99999999998626899-5899846888888999864787999962599999999