HHsearch alignment for GI: 254780582 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.10 E-value=3.7e-05 Score=49.50 Aligned_cols=132 Identities=15% Similarity=0.087 Sum_probs=85.1
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCC---C-C---EEEECHHHCCCC
Q ss_conf 999999750104897599965388111355312----3874887305899983231168---6-2---365333656775
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYF---S-S---TALVSEGNLPLA 92 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~-~---~~~~d~~~LPf~ 92 (242)
T Consensus 90 D~s~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~ 169 (309)
T pfam08704 90 DISLIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFD 169 (309)
T ss_pred CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCC
T ss_conf 09999998098999999983678429999999974888659998447899999999998749875058898520013666
Q ss_pred ---CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf ---4720200220247752299999999998469-998899973387740345653276656557888999999962876
Q gi|254780582|r 93 ---DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLT-SGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFT 168 (242)
Q Consensus 93 ---~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLk-PgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~ 168 (242)
T Consensus 170 ~~~~~~~D~VfLD-----lp~PW~ai~~~~~~Lk~~Gg~l~~f~P~ieQ-----------------v~r~~~aL~~~gF~ 227 (309)
T pfam08704 170 TEVSNKADAVFLD-----LPAPWEAIPHAAKALKVEGGRLCSFSPCIEQ-----------------VQRTCLALAALGFT 227 (309)
T ss_pred CCCCCCCCEEEEC-----CCCHHHHHHHHHHHHCCCCCEEEEECCCHHH-----------------HHHHHHHHHHCCCC
T ss_conf 4456643589975-----8997998899998606899689999198999-----------------99999999977997
Q ss_pred CEEEEEEEE
Q ss_conf 212578983
Q gi|254780582|r 169 LSITSRSLF 177 (242)
Q Consensus 169 ~~~~~~~~~ 177 (242)
T Consensus 228 ~i~t~E~l~ 236 (309)
T pfam08704 228 EIETIEVLP 236 (309)
T ss_pred CEEEEEEEE
T ss_conf 407999953