BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780582|ref|YP_003064995.1| Methyltransferase type 11
[Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780582|ref|YP_003064995.1| Methyltransferase type 11 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 242

 Score =  503 bits (1294), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT 60
           MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT
Sbjct: 1   MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT 60

Query: 61  LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR 120
           LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR
Sbjct: 61  LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR 120

Query: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180
           VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP
Sbjct: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180

Query: 181 THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKILYQGLPITESKKKHISSPILVPHTV 240
           THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKILYQGLPITESKKKHISSPILVPHTV
Sbjct: 181 THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKILYQGLPITESKKKHISSPILVPHTV 240

Query: 241 ST 242
           ST
Sbjct: 241 ST 242


>gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 265

 Score = 28.9 bits (63), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 89  LPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV 131
           LP   +S D   +   +       L+L EI+R+L  GGR++V+
Sbjct: 134 LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176


>gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 273

 Score = 24.6 bits (52), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 89  LPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133
           +P    SVD +L    L    D   M  +I  +L  GG  +  +P
Sbjct: 97  IPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,504
Number of Sequences: 1233
Number of extensions: 6252
Number of successful extensions: 15
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 242
length of database: 328,796
effective HSP length: 71
effective length of query: 171
effective length of database: 241,253
effective search space: 41254263
effective search space used: 41254263
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)