BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780582|ref|YP_003064995.1| Methyltransferase type 11 [Candidatus Liberibacter asiaticus str. psy62] (242 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780582|ref|YP_003064995.1| Methyltransferase type 11 [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 503 bits (1294), Expect = e-144, Method: Compositional matrix adjust. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT 60 MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT Sbjct: 1 MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT 60 Query: 61 LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR 120 LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR Sbjct: 61 LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR 120 Query: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180 VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP Sbjct: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180 Query: 181 THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKILYQGLPITESKKKHISSPILVPHTV 240 THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKILYQGLPITESKKKHISSPILVPHTV Sbjct: 181 THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKILYQGLPITESKKKHISSPILVPHTV 240 Query: 241 ST 242 ST Sbjct: 241 ST 242 >gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 28.9 bits (63), Expect = 0.075, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 89 LPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV 131 LP +S D + + L+L EI+R+L GGR++V+ Sbjct: 134 LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 >gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 24.6 bits (52), Expect = 1.5, Method: Compositional matrix adjust. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 89 LPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 +P SVD +L L D M +I +L GG + +P Sbjct: 97 IPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.139 0.442 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 157,504 Number of Sequences: 1233 Number of extensions: 6252 Number of successful extensions: 15 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 4 length of query: 242 length of database: 328,796 effective HSP length: 71 effective length of query: 171 effective length of database: 241,253 effective search space: 41254263 effective search space used: 41254263 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 37 (18.9 bits)