Query gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 256
No_of_seqs 247 out of 4935
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 21:50:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780583.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03413 GSH_gloB hydroxyacyl 100.0 0 0 625.8 22.2 247 6-255 2-248 (248)
2 PRK10241 hydroxyacylglutathion 100.0 0 0 611.2 21.5 247 4-255 1-251 (251)
3 KOG0813 consensus 100.0 0 0 475.7 17.4 249 6-256 5-264 (265)
4 KOG0814 consensus 100.0 1E-36 2.6E-41 258.6 9.8 192 13-239 20-220 (237)
5 smart00849 Lactamase_B Metallo 99.9 3.3E-26 8.3E-31 190.6 10.7 156 12-171 5-183 (183)
6 COG0491 GloB Zn-dependent hydr 99.9 1.3E-22 3.3E-27 167.2 12.0 163 10-173 21-212 (252)
7 PRK11921 metallo-beta-lactamas 99.7 1.8E-17 4.5E-22 134.0 9.0 174 14-201 34-245 (395)
8 COG0426 FpaA Uncharacterized f 99.7 9.6E-17 2.4E-21 129.2 9.1 176 14-204 37-247 (388)
9 PRK05452 anaerobic nitric oxid 99.7 2.7E-16 7E-21 126.3 8.9 175 14-202 36-250 (479)
10 pfam00753 Lactamase_B Metallo- 99.6 1.1E-15 2.8E-20 122.3 8.3 121 14-136 6-146 (148)
11 COG0595 mRNA degradation ribon 99.2 4.3E-11 1.1E-15 92.6 5.6 122 14-138 23-171 (555)
12 TIGR00649 MG423 conserved hypo 99.1 9.8E-11 2.5E-15 90.3 6.6 120 14-137 15-179 (593)
13 PRK11539 hypothetical protein; 99.1 1.2E-09 2.9E-14 83.4 11.5 153 16-187 511-681 (754)
14 PRK00055 ribonuclease Z; Revie 99.1 1.2E-10 3E-15 89.7 5.6 117 15-136 21-165 (259)
15 COG2333 ComEC Predicted hydrol 99.0 2.2E-09 5.7E-14 81.5 9.4 159 16-188 56-234 (293)
16 COG1237 Metal-dependent hydrol 99.0 1.1E-08 2.9E-13 76.9 10.6 66 15-82 23-94 (259)
17 PRK11244 phnP carbon-phosphoru 98.9 1.8E-08 4.5E-13 75.7 10.3 113 16-134 39-163 (250)
18 PRK02113 putative hydrolase; P 98.9 1.1E-08 2.7E-13 77.1 8.1 156 14-186 35-215 (252)
19 TIGR03307 PhnP phosphonate met 98.8 6E-08 1.5E-12 72.2 10.5 113 16-134 39-163 (249)
20 TIGR03675 arCOG00543 arCOG0178 98.8 3.5E-09 9E-14 80.2 2.8 129 3-134 174-347 (630)
21 COG1236 YSH1 Predicted exonucl 98.7 2.4E-08 6.1E-13 74.8 4.1 116 15-134 15-164 (427)
22 PRK05184 pyrroloquinoline quin 98.6 6.5E-07 1.7E-11 65.5 9.6 125 16-143 41-202 (302)
23 PRK00685 metal-dependent hydro 98.6 3E-08 7.6E-13 74.2 2.2 120 16-137 10-146 (228)
24 TIGR02651 RNase_Z ribonuclease 98.4 1.1E-06 2.7E-11 64.2 6.9 116 8-126 11-170 (327)
25 COG1235 PhnP Metal-dependent h 98.4 5.9E-06 1.5E-10 59.3 9.9 54 25-79 40-93 (269)
26 COG1782 Predicted metal-depend 98.3 4.3E-07 1.1E-11 66.7 2.9 127 8-137 186-356 (637)
27 PRK02126 ribonuclease Z; Provi 98.2 3.6E-06 9.2E-11 60.7 5.4 70 9-82 12-86 (334)
28 COG2220 Predicted Zn-dependent 98.1 6.1E-06 1.6E-10 59.2 5.0 155 14-171 14-211 (258)
29 COG1234 ElaC Metal-dependent h 98.0 0.00012 3.2E-09 50.7 10.0 70 8-81 13-93 (292)
30 PRK04286 hypothetical protein; 97.9 0.00019 4.8E-09 49.6 10.5 153 16-171 17-247 (294)
31 pfam02112 PDEase_II cAMP phosp 97.9 0.00011 2.8E-09 51.1 8.9 125 10-134 12-204 (323)
32 COG2015 Alkyl sulfatase and re 97.8 3.4E-05 8.7E-10 54.4 4.9 108 25-132 135-301 (655)
33 PRK11709 putative L-ascorbate 97.7 5.3E-05 1.3E-09 53.1 4.1 123 48-171 109-282 (355)
34 KOG4736 consensus 97.6 6.8E-05 1.7E-09 52.4 3.8 103 23-135 102-212 (302)
35 KOG1136 consensus 97.1 0.00079 2E-08 45.5 4.6 134 1-136 1-181 (501)
36 KOG1135 consensus 96.8 0.0029 7.3E-08 41.9 5.5 64 15-80 16-85 (764)
37 KOG1361 consensus 96.8 0.00071 1.8E-08 45.8 2.3 106 27-136 91-207 (481)
38 KOG1137 consensus 96.4 0.0019 4.9E-08 43.0 2.2 116 16-134 29-182 (668)
39 COG2248 Predicted hydrolase (m 96.2 0.0098 2.5E-07 38.4 4.9 111 24-134 23-185 (304)
40 TIGR02650 RNase_Z_T_toga ribon 94.4 0.015 3.9E-07 37.2 1.1 100 16-121 12-140 (277)
41 TIGR02649 true_RNase_BN ribonu 93.6 0.21 5.2E-06 29.9 5.5 160 7-175 10-198 (304)
42 TIGR00361 ComEC_Rec2 DNA inter 89.0 0.37 9.4E-06 28.2 2.9 99 36-134 532-651 (731)
43 PRK00719 alkanesulfonate monoo 83.2 2.4 6.2E-05 23.0 4.6 75 129-210 288-362 (377)
44 KOG2121 consensus 83.0 0.3 7.5E-06 28.9 -0.2 63 8-71 454-524 (746)
45 COG5212 PDE1 Low-affinity cAMP 79.6 1.8 4.7E-05 23.7 2.9 87 48-134 112-232 (356)
46 TIGR00678 holB DNA polymerase 76.1 3 7.7E-05 22.3 3.2 27 99-125 99-127 (216)
47 KOG3798 consensus 70.9 4.3 0.00011 21.3 2.9 70 47-117 131-210 (343)
48 COG0462 PrsA Phosphoribosylpyr 68.5 9.5 0.00024 19.1 4.3 29 105-135 202-230 (314)
49 TIGR02108 PQQ_syn_pqqB coenzym 68.3 3.7 9.6E-05 21.7 2.2 61 22-82 45-115 (314)
50 pfam08747 DUF1788 Domain of un 68.0 2.4 6.1E-05 23.0 1.1 56 132-188 61-117 (125)
51 cd01449 TST_Repeat_2 Thiosulfa 68.0 8.5 0.00022 19.4 3.9 63 109-183 36-99 (118)
52 KOG1249 consensus 65.0 3.7 9.4E-05 21.8 1.6 44 106-149 363-424 (572)
53 TIGR00452 TIGR00452 methyltran 64.0 2.7 6.9E-05 22.6 0.8 99 131-239 190-304 (316)
54 TIGR01935 NOT-MenG RraA family 61.8 4.2 0.00011 21.4 1.4 42 6-48 38-89 (155)
55 PRK08463 acetyl-CoA carboxylas 61.5 13 0.00032 18.3 3.8 19 163-185 408-426 (478)
56 TIGR00502 nagB glucosamine-6-p 59.6 2.6 6.6E-05 22.8 0.0 102 100-226 127-241 (260)
57 PRK04554 consensus 57.1 16 0.00041 17.6 3.7 27 6-32 33-61 (327)
58 TIGR01979 sufS cysteine desulf 56.8 6.9 0.00018 20.0 1.8 96 37-135 129-256 (409)
59 PRK12999 pyruvate carboxylase; 55.7 17 0.00042 17.6 3.6 10 6-15 213-222 (1147)
60 PRK02458 ribose-phosphate pyro 54.8 18 0.00046 17.3 4.5 27 6-32 36-64 (323)
61 PRK08126 hypothetical protein; 54.5 12 0.00031 18.4 2.8 65 128-197 315-380 (428)
62 PRK02269 ribose-phosphate pyro 54.0 18 0.00047 17.2 4.1 27 6-32 32-60 (321)
63 TIGR03565 alk_sulf_monoox alka 53.3 12 0.0003 18.5 2.5 14 240-253 305-318 (346)
64 COG4952 Predicted sugar isomer 53.0 8.1 0.00021 19.6 1.7 61 4-72 49-116 (430)
65 PRK06111 acetyl-CoA carboxylas 52.5 17 0.00044 17.4 3.3 10 37-46 65-74 (449)
66 PRK08591 acetyl-CoA carboxylas 50.8 20 0.00051 17.0 3.4 11 36-46 64-74 (449)
67 TIGR02673 FtsE cell division A 50.6 19 0.00049 17.1 3.3 30 171-200 93-123 (215)
68 PRK12833 acetyl-CoA carboxylas 49.6 21 0.00055 16.8 3.4 11 36-46 67-77 (458)
69 PRK02270 consensus 48.9 22 0.00056 16.7 3.7 27 6-32 32-60 (327)
70 KOG1448 consensus 48.6 22 0.00057 16.7 6.0 28 6-33 30-59 (316)
71 PRK05259 consensus 48.1 23 0.00058 16.6 3.4 26 6-31 27-54 (310)
72 PRK13547 hmuV hemin importer A 48.0 19 0.00047 17.2 2.9 10 23-32 26-35 (273)
73 PRK02039 consensus 48.0 23 0.00058 16.6 3.8 27 6-32 32-60 (316)
74 TIGR00972 3a0107s01c2 phosphat 47.5 14 0.00035 18.1 2.1 15 165-184 195-209 (248)
75 PRK10877 thiol:disulfide inter 47.3 23 0.00058 16.6 3.2 83 115-205 53-136 (232)
76 PRK08462 biotin carboxylase; V 46.8 22 0.00057 16.7 3.1 22 26-47 49-77 (446)
77 PRK07178 acetyl-CoA carboxylas 46.7 24 0.00061 16.5 3.2 19 163-185 406-424 (471)
78 PRK01999 consensus 46.4 24 0.00062 16.5 4.2 28 5-32 31-60 (311)
79 PRK10512 selenocysteinyl-tRNA- 46.0 11 0.00028 18.7 1.4 18 15-33 42-60 (615)
80 COG1924 Activator of 2-hydroxy 45.6 25 0.00063 16.4 4.5 106 36-159 174-283 (396)
81 cd02784 MopB_CT_PHLH The MopB_ 44.8 15 0.00039 17.8 2.0 56 64-124 20-87 (137)
82 PRK05038 consensus 44.1 26 0.00067 16.3 3.7 27 6-32 30-58 (315)
83 PRK06827 phosphoribosylpyropho 44.0 26 0.00067 16.2 4.7 22 150-171 280-302 (381)
84 COG1217 TypA Predicted membran 43.6 8.6 0.00022 19.4 0.6 16 212-227 334-349 (603)
85 PRK04923 ribose-phosphate pyro 42.5 28 0.0007 16.1 4.8 28 5-32 32-61 (319)
86 PRK01259 ribose-phosphate pyro 42.1 28 0.00071 16.1 4.1 27 5-31 26-54 (309)
87 COG4566 TtrR Response regulato 41.4 29 0.00073 16.0 4.1 26 26-51 6-33 (202)
88 PRK13230 nitrogenase reductase 41.3 27 0.0007 16.1 2.9 39 185-223 241-279 (292)
89 PRK09038 flagellar motor prote 41.3 29 0.00073 16.0 3.0 76 116-196 119-197 (285)
90 PRK00553 ribose-phosphate pyro 40.3 30 0.00076 15.9 4.3 26 7-32 45-72 (340)
91 PRK07033 hypothetical protein; 40.2 26 0.00066 16.3 2.6 70 128-202 312-383 (429)
92 PRK02812 ribose-phosphate pyro 40.0 30 0.00077 15.8 3.9 26 7-32 49-76 (331)
93 PRK01506 consensus 39.9 30 0.00077 15.8 4.4 27 6-32 36-64 (317)
94 cd03278 ABC_SMC_barmotin Barmo 39.7 27 0.00069 16.2 2.6 22 9-33 10-31 (197)
95 TIGR01286 nifK nitrogenase mol 39.2 31 0.00079 15.8 3.5 23 25-47 58-81 (526)
96 PRK01132 consensus 38.2 32 0.00082 15.7 3.7 25 7-31 28-54 (286)
97 TIGR03597 GTPase_YqeH ribosome 37.8 9.1 0.00023 19.2 -0.0 100 38-143 116-259 (360)
98 COG1038 PycA Pyruvate carboxyl 37.5 33 0.00084 15.6 4.0 15 238-252 593-607 (1149)
99 PRK00090 bioD dithiobiotin syn 37.4 33 0.00084 15.6 5.1 16 36-51 18-33 (223)
100 pfam06415 iPGM_N BPG-independe 36.9 17 0.00044 17.4 1.3 45 38-82 19-69 (223)
101 KOG0157 consensus 36.8 24 0.00062 16.4 2.0 38 164-201 297-334 (497)
102 PRK03675 consensus 36.2 35 0.00088 15.5 4.2 44 4-47 22-74 (279)
103 TIGR01394 TypA_BipA GTP-bindin 36.1 15 0.00037 17.9 0.8 30 25-54 96-130 (609)
104 COG0249 MutS Mismatch repair A 35.0 36 0.00092 15.3 3.1 24 21-45 141-164 (843)
105 TIGR00514 accC acetyl-CoA carb 34.9 34 0.00086 15.5 2.5 112 5-125 209-363 (451)
106 TIGR01821 5aminolev_synth 5-am 34.2 12 0.00031 18.4 0.2 31 31-63 138-168 (427)
107 PRK03092 ribose-phosphate pyro 34.2 37 0.00095 15.3 4.5 26 6-31 16-43 (304)
108 cd03260 ABC_PstB_phosphate_tra 34.0 31 0.00078 15.8 2.2 40 157-198 82-123 (227)
109 PRK05306 infB translation init 33.8 27 0.0007 16.1 1.9 41 116-161 529-571 (839)
110 TIGR01331 bisphos_cysQ 3'(2'), 33.8 36 0.00092 15.4 2.5 56 158-226 151-212 (263)
111 PRK07471 DNA polymerase III su 33.7 38 0.00097 15.2 3.9 25 138-162 229-257 (363)
112 TIGR01285 nifN nitrogenase mol 33.6 38 0.00097 15.2 2.9 18 98-115 225-242 (451)
113 cd01853 Toc34_like Toc34-like 33.4 30 0.00076 15.9 2.0 19 100-118 75-93 (249)
114 cd02653 nuc_hydro_3 NH_3: A su 33.2 39 0.00098 15.2 4.4 54 28-81 2-65 (320)
115 PRK06925 flagellar motor prote 33.0 33 0.00083 15.6 2.2 63 129-196 115-178 (230)
116 COG1135 AbcC ABC-type metal io 32.7 39 0.001 15.1 2.9 44 11-57 156-201 (339)
117 PRK02277 orotate phosphoribosy 32.2 40 0.001 15.1 4.9 15 124-138 140-154 (201)
118 TIGR02470 sucr_synth sucrose s 31.9 31 0.0008 15.7 1.9 41 211-251 572-614 (790)
119 PRK08699 DNA polymerase III su 31.9 40 0.001 15.0 4.1 33 24-56 113-151 (325)
120 PRK07034 hypothetical protein; 31.8 39 0.001 15.1 2.4 74 115-196 366-445 (565)
121 cd02780 MopB_CT_Tetrathionate_ 31.8 29 0.00073 16.0 1.7 58 62-124 17-79 (143)
122 PRK05222 5-methyltetrahydropte 31.6 20 0.00052 16.9 1.0 41 129-169 275-318 (756)
123 pfam06962 rRNA_methylase Putat 31.3 41 0.0011 15.0 3.0 25 149-173 69-98 (140)
124 pfam08003 Methyltransf_9 Prote 31.3 12 0.00031 18.4 -0.2 99 132-239 183-296 (315)
125 PRK11493 sseA 3-mercaptopyruva 31.2 41 0.001 15.0 2.4 62 111-185 192-254 (281)
126 PRK00934 ribose-phosphate pyro 31.0 42 0.0011 14.9 4.4 28 5-32 25-54 (286)
127 pfam02844 GARS_N Phosphoribosy 31.0 42 0.0011 14.9 4.2 57 26-85 41-97 (99)
128 PRK08944 motB flagellar motor 30.7 38 0.00097 15.2 2.2 68 131-203 181-251 (305)
129 cd02509 GDP-M1P_Guanylyltransf 30.6 43 0.0011 14.9 2.7 26 128-156 182-207 (274)
130 COG4161 ArtP ABC-type arginine 30.5 41 0.0011 15.0 2.4 15 19-33 23-37 (242)
131 PRK07199 phosphoribosylpyropho 30.5 43 0.0011 14.9 4.3 26 6-31 29-56 (301)
132 COG1105 FruK Fructose-1-phosph 30.2 43 0.0011 14.8 8.4 129 99-251 71-210 (310)
133 PRK11624 cdsA CDP-diglyceride 30.0 25 0.00063 16.4 1.1 28 146-173 231-259 (285)
134 PRK04117 consensus 29.8 44 0.0011 14.8 4.0 28 5-32 29-58 (309)
135 PRK09112 DNA polymerase III su 29.0 45 0.0012 14.7 4.1 23 138-160 233-258 (352)
136 COG1360 MotB Flagellar motor p 28.5 42 0.0011 14.9 2.1 75 118-197 116-193 (244)
137 cd02793 MopB_CT_DMSOR-BSOR-TMA 28.3 27 0.00068 16.2 1.1 43 74-121 33-79 (129)
138 PRK05434 phosphoglyceromutase; 27.7 31 0.00078 15.8 1.3 44 38-81 101-150 (511)
139 TIGR02998 RraA_entero regulato 27.7 27 0.0007 16.1 1.0 29 6-34 37-67 (161)
140 pfam03568 Peptidase_C50 Peptid 27.5 43 0.0011 14.8 2.0 10 38-47 48-57 (339)
141 PRK11230 glycolate oxidase sub 27.4 48 0.0012 14.5 3.6 27 21-48 116-143 (499)
142 COG2897 SseA Rhodanese-related 27.3 48 0.0012 14.5 3.1 60 112-184 195-256 (285)
143 COG1117 PstB ABC-type phosphat 27.3 49 0.0012 14.5 3.3 25 22-46 31-57 (253)
144 cd04170 EF-G_bact Elongation f 27.1 22 0.00055 16.8 0.5 18 98-115 58-75 (268)
145 TIGR03286 methan_mark_15 putat 27.1 42 0.0011 14.9 1.9 103 37-158 184-294 (404)
146 TIGR01739 tegu_FGAM_synt herpe 27.0 45 0.0011 14.7 2.0 167 26-205 682-888 (1313)
147 PRK09311 bifunctional 3,4-dihy 26.9 49 0.0013 14.5 9.5 70 100-174 218-298 (400)
148 PRK13796 GTP-binding protein Y 26.8 18 0.00047 17.2 0.0 108 34-143 116-267 (367)
149 pfam03536 VRP3 Salmonella viru 26.3 33 0.00083 15.6 1.2 63 147-225 152-215 (218)
150 PRK10418 nikD nickel transport 26.1 51 0.0013 14.4 2.3 22 151-172 179-200 (254)
151 TIGR00993 3a0901s04IAP86 chlor 26.1 40 0.001 15.0 1.7 13 52-65 530-542 (772)
152 PRK10294 6-phosphofructokinase 26.1 51 0.0013 14.4 9.2 28 28-55 33-61 (309)
153 KOG2499 consensus 26.1 51 0.0013 14.4 3.7 82 97-196 254-353 (542)
154 TIGR02199 rfaE_dom_II rfaE bif 25.8 16 0.00042 17.6 -0.4 76 95-179 9-112 (144)
155 cd02778 MopB_CT_Thiosulfate-R- 25.6 27 0.00068 16.2 0.7 57 62-123 17-78 (123)
156 cd04882 ACT_Bt0572_2 C-termina 25.3 53 0.0013 14.3 4.9 35 15-49 29-64 (65)
157 cd03255 ABC_MJ0796_Lo1CDE_FtsE 25.2 52 0.0013 14.3 2.1 27 157-184 83-109 (218)
158 cd04169 RF3 RF3 subfamily. Pe 25.0 25 0.00063 16.4 0.4 18 98-115 65-82 (267)
159 PRK05917 DNA polymerase III su 24.6 54 0.0014 14.2 3.8 14 213-226 230-243 (290)
160 PRK05784 phosphoribosylamine-- 24.5 54 0.0014 14.2 4.5 56 26-84 49-104 (485)
161 COG1084 Predicted GTPase [Gene 24.2 31 0.0008 15.7 0.8 84 84-170 196-289 (346)
162 TIGR03005 ectoine_ehuA ectoine 24.1 55 0.0014 14.1 2.8 33 147-184 182-217 (256)
163 TIGR01307 pgm_bpd_ind 2,3-bisp 23.5 44 0.0011 14.8 1.4 27 55-81 127-154 (529)
164 cd06150 YjgF_YER057c_UK114_lik 23.4 57 0.0015 14.1 2.4 31 128-158 6-38 (105)
165 cd01886 EF-G Elongation factor 23.2 28 0.00072 16.1 0.4 19 98-116 58-76 (270)
166 PRK12312 infB translation init 23.1 27 0.0007 16.1 0.3 40 117-160 305-345 (610)
167 pfam02543 CmcH_NodU Carbamoylt 22.9 58 0.0015 14.0 2.6 34 184-218 288-321 (360)
168 pfam01148 CTP_transf_1 Cytidyl 22.8 41 0.0011 15.0 1.2 29 146-174 209-238 (259)
169 PRK10218 GTP-binding protein; 22.8 30 0.00076 15.9 0.5 30 25-54 94-128 (607)
170 pfam01924 HypD Hydrogenase for 22.6 59 0.0015 14.0 2.7 44 35-78 5-60 (355)
171 cd04168 TetM_like Tet(M)-like 22.5 30 0.00076 15.9 0.4 18 98-115 58-75 (237)
172 cd00881 GTP_translation_factor 22.3 30 0.00076 15.9 0.4 19 98-116 56-74 (189)
173 cd01445 TST_Repeats Thiosulfat 22.2 60 0.0015 13.9 3.4 65 112-184 52-120 (138)
174 cd02649 nuc_hydro_CeIAG nuc_hy 22.2 60 0.0015 13.9 4.3 54 28-81 3-66 (306)
175 cd03244 ABCC_MRP_domain2 Domai 21.9 61 0.0016 13.9 2.3 14 118-132 79-92 (221)
176 TIGR02017 hutG_amidohyd N-form 21.9 60 0.0015 13.9 1.9 99 112-225 82-231 (269)
177 pfam09412 XendoU Endoribonucle 21.8 57 0.0015 14.0 1.8 15 211-225 80-94 (157)
178 COG0399 WecE Predicted pyridox 21.8 61 0.0016 13.9 2.8 42 34-78 111-154 (374)
179 pfam10143 PhosphMutase 2,3-bis 21.3 51 0.0013 14.4 1.4 34 138-173 75-109 (174)
180 TIGR00653 GlnA glutamine synth 20.9 46 0.0012 14.7 1.1 18 198-215 417-434 (486)
181 PRK00741 prfC peptide chain re 20.7 34 0.00087 15.5 0.4 13 129-141 322-334 (526)
182 cd03258 ABC_MetN_methionine_tr 20.6 65 0.0017 13.7 2.7 16 86-101 21-36 (233)
183 TIGR01127 ilvA_1Cterm threonin 20.5 65 0.0017 13.7 4.1 72 38-110 139-225 (381)
184 TIGR03554 F420_G6P_DH glucose- 20.4 65 0.0017 13.7 3.6 16 238-253 285-300 (331)
185 COG0696 GpmI Phosphoglyceromut 20.4 54 0.0014 14.2 1.4 27 55-81 122-149 (509)
No 1
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=100.00 E-value=0 Score=625.80 Aligned_cols=247 Identities=39% Similarity=0.685 Sum_probs=240.5
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCC
Q ss_conf 53011057626999988998499986999899999999859964399985898433000001111000101200012343
Q gi|254780583|r 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSK 85 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~ 85 (256)
|+||+|+|||+|||.|+. ++|++||||+++++++++++++++|++||+||+|+||++|+.+|+++++++||++..+ +
T Consensus 2 ~~ip~l~DNy~YLi~d~~-~~a~vIDP~d~~~i~~~l~~~~l~l~~IL~TH~H~DHi~G~~~L~~~~~~~Vyg~~~~--~ 78 (248)
T TIGR03413 2 IPIPALSDNYIWLLHDPD-GQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE--R 78 (248)
T ss_pred EEECEECCEEEEEEEECC-CCEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHH--C
T ss_conf 533542565899999189-8589987998099999999879967899948988600131899997514661201111--6
Q ss_pred CCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 23322033101001111222331025544567522686146543137704304613446663156776654420134465
Q gi|254780583|r 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKT 165 (256)
Q Consensus 86 i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t 165 (256)
++++++.++|||.|.+|+.+++|++|||||+||||||++++++||||||||+|||||+|+|++++||+||+||++||++|
T Consensus 79 ~~~~d~~l~dgd~i~ig~~~~~vi~TPGHT~ghv~f~~~~~~~lFtGDTLF~gGcGR~feG~~~~m~~SL~kl~~Lpd~T 158 (248)
T TIGR03413 79 IPGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDT 158 (248)
T ss_pred CCCCEEEECCCCEEEECCEEEEEEECCCCCCCCEEEEECCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 87770782589889889988999967899730068995574079844634416502678989999999999986489972
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 02016652045889877502344789999999998885789866787899987282246789899997388998989999
Q gi|254780583|r 166 HIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245 (256)
Q Consensus 166 ~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~~~~~~~f 245 (256)
+||||||||++||+||+++||+|+.+++++.+++++|+++.|||||||++||++|||||++++.+++++++..+++.++|
T Consensus 159 ~vypGHeYt~~Nl~Fa~~v~p~n~~l~~~~~~~~~~~~~~~~tvPstl~~E~~~NPFlR~~~~~i~~~~~~~~~~~~evf 238 (248)
T TIGR03413 159 LVYCAHEYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDPAVRAALGSQGADPVEVF 238 (248)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHH
T ss_conf 89847550477899998748999999999999999987799816642999860494405899899998578899999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999867328
Q gi|254780583|r 246 TELRIRKNQS 255 (256)
Q Consensus 246 ~~lR~~kd~f 255 (256)
.+||+|||||
T Consensus 239 ~~LR~~Kd~F 248 (248)
T TIGR03413 239 AALRAWKDNF 248 (248)
T ss_pred HHHHHHHCCC
T ss_conf 9999854489
No 2
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=100.00 E-value=0 Score=611.20 Aligned_cols=247 Identities=36% Similarity=0.605 Sum_probs=232.6
Q ss_pred CEE-EEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHC-CCEEEECCC
Q ss_conf 145-301105762699998899849998699989999999985996439998589843300000111100-010120001
Q gi|254780583|r 4 LNI-AISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF-NCTIFGPLE 81 (256)
Q Consensus 4 ~~i-~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~-~~~v~~~~~ 81 (256)
|+| +||+|+|||+|||.++ +++|++||||++++++++++++++++++||+||+|+||++|+.+|++++ +++||++.+
T Consensus 1 m~i~~ip~~~DNy~yli~d~-~~~a~vIDPgd~~~i~~~l~~~~l~l~~IL~TH~H~DHi~G~~~L~~~~~~~~v~g~~~ 79 (251)
T PRK10241 1 MNLNSIPAFDDNYIWVLNDE-AGRCLIVDPGEAEPVLNAIAANNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQE 79 (251)
T ss_pred CEEEEEEEECCEEEEEEECC-CCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECHHH
T ss_conf 96799612556689999859-98389994997099999999779917899945895576632999998768985867033
Q ss_pred CCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 23432332203310100111122233102554456752268614654313770430461344666315677665442013
Q gi|254780583|r 82 ESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSF 161 (256)
Q Consensus 82 ~~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~L 161 (256)
.. .++.++.++|||.+.+|+.+++|++|||||+||||||. +++||||||||+|||||+|+|+++|||+||+||++|
T Consensus 80 ~~--~~~~~~~v~dgd~i~~g~~~~~vi~TPGHT~Ghi~y~~--~~~lFtGDTLF~gGcGR~feG~~~~m~~SL~kl~~L 155 (251)
T PRK10241 80 TQ--DKGTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFS--KPYLFCGDTLFSGGCGRLFEGTPSQMYQSLKKINAL 155 (251)
T ss_pred CC--CCCCCEEECCCCEEEECCEEEEEEECCCCCCCHHHHHC--CCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 26--76898784899999989989999977999830001113--770675153004661478998999999999999678
Q ss_pred CCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC--C
Q ss_conf 44650201665204588987750234478999999999888578986678789998728224678989999738899--8
Q gi|254780583|r 162 SDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN--A 239 (256)
Q Consensus 162 p~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~--~ 239 (256)
|++|+||||||||++||+||+++||+|+.+++++++++++|+++.||+||||++||++||||||+++.++++++.+. +
T Consensus 156 P~~T~vy~GHeYt~~Nl~Fa~~vep~N~~l~~~~~~~~~~r~~~~~t~Pstl~~E~~~NpFlR~~~~~i~~~~~~~~~~~ 235 (251)
T PRK10241 156 PDDTLICCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTEDIDLINVINEETLLQ 235 (251)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99878972633228789999885899999999999999999779995885489997449411589989999986433799
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9899999999867328
Q gi|254780583|r 240 SNLAVFTELRIRKNQS 255 (256)
Q Consensus 240 ~~~~~f~~lR~~kd~f 255 (256)
++.++|++||+|||||
T Consensus 236 ~~~~vF~~lR~~KD~F 251 (251)
T PRK10241 236 QPEERFAWLRSKKDRF 251 (251)
T ss_pred CHHHHHHHHHHHHCCC
T ss_conf 9999999999854489
No 3
>KOG0813 consensus
Probab=100.00 E-value=0 Score=475.68 Aligned_cols=249 Identities=35% Similarity=0.585 Sum_probs=236.0
Q ss_pred EEEEEECCCEEEEEEE-CCCCEEEEECCCCHHHHHHHHHH---CCCCEEEEEECCCCHHHHCHHHHHHHH--CCCEEEEC
Q ss_conf 5301105762699998-89984999869998999999998---599643999858984330000011110--00101200
Q gi|254780583|r 6 IAISLYHDNFCILIHN-HKYRLTAAIDAPDTYIISKMLRE---KGWFLTHIFNTHHHIDHTRANLNLKKF--FNCTIFGP 79 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d-~~t~~~viIDpgd~~~i~~~l~~---~~~~i~~Il~TH~H~DHigg~~~l~~~--~~~~v~~~ 79 (256)
+.+|+++|||+||+.+ ++++.+.+|||++++.+...+++ .+..|.+||+||+||||+|||..|++. +++++|++
T Consensus 5 ~~~~~~~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~ 84 (265)
T KOG0813 5 PRLPTLQDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGG 84 (265)
T ss_pred CCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEECC
T ss_conf 34431577569997536411365322676318888888765530476468995222421467678887413578279668
Q ss_pred CCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECC---CCCCCCCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 0123432332203310100111122233102554456752268614---6543137704304613446663156776654
Q gi|254780583|r 80 LEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN---DHFLCVGDTLFSLGCGRIFEDSYAEMFESLE 156 (256)
Q Consensus 80 ~~~~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~---~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~ 156 (256)
. .++++++++.+++||++.+|+.++++++|||||.||||||+.+ ++++|||||||..||||+|||++++|..|++
T Consensus 85 ~--~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~FEgt~~~M~~sl~ 162 (265)
T KOG0813 85 A--DDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRFFEGTAEQMDSSLN 162 (265)
T ss_pred C--HHCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCEEEEEECCCCCCEEEECCCEEECCCCCHHCCCHHHHHHHHH
T ss_conf 7--00075534467888679989888999838985688089995157899758857826535862331577899998588
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHCCCCCCCCHHHHHHCC
Q ss_conf 4201344650201665204588987750234478999999999888578986-678789998728224678989999738
Q gi|254780583|r 157 KIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYT-NPSTISLEKKVNPFLRIENTSLRKNLN 235 (256)
Q Consensus 157 kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~t-vPstl~~Ek~~NPflr~~~~~~~~~~~ 235 (256)
.|..||++|.||||||||.+|++|+.+++|.|...++++.|+++.++++.+| +|+||++|+.+|||||+.++.++++++
T Consensus 163 ~l~~L~~~t~iypGHeYt~~n~kf~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Npf~r~~~~~v~k~~g 242 (265)
T KOG0813 163 ELIALPDDTRIYPGHEYTKSNLKFARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNPFMRLKKEKVQKALG 242 (265)
T ss_pred HHHCCCCCCEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCHHHHHHHHC
T ss_conf 76247988568468423303010454205553889999999998753267646700488998619411126176656628
Q ss_pred CC-CCCHHHHHHHHHHHHHCCC
Q ss_conf 89-9898999999998673289
Q gi|254780583|r 236 ME-NASNLAVFTELRIRKNQSK 256 (256)
Q Consensus 236 ~~-~~~~~~~f~~lR~~kd~f~ 256 (256)
.. ..++..+|.+||++||+|+
T Consensus 243 ~~~~~~~~~~m~~lr~~K~~~~ 264 (265)
T KOG0813 243 LTETADRIVVMGKLRELKNRFS 264 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8665348888899987554027
No 4
>KOG0814 consensus
Probab=100.00 E-value=1e-36 Score=258.57 Aligned_cols=192 Identities=30% Similarity=0.433 Sum_probs=162.3
Q ss_pred CCEEEEEEECCCCEEEEECCCC--HHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH-CCCEEEECCCCCCCCCCC
Q ss_conf 7626999988998499986999--8999999998599643999858984330000011110-001012000123432332
Q gi|254780583|r 13 DNFCILIHNHKYRLTAAIDAPD--TYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF-FNCTIFGPLEESSKIPGI 89 (256)
Q Consensus 13 DNy~YlI~d~~t~~~viIDpgd--~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~-~~~~v~~~~~~~~~i~~~ 89 (256)
.-|+||+.|.++++|++|||.. +..=.+.+++.|+++.+-++||-|+||+-|...|+.. ++++-..+..... ..
T Consensus 20 sTytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kSVis~~SGa---kA 96 (237)
T KOG0814 20 STYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKSVISSASGA---KA 96 (237)
T ss_pred CEEEEEEEECCCCCEEEECCHHHCCCCHHHHHHHCCCEEEEEECCEEECCCCCCCCHHHHHCCCHHHHHHHCCCC---CC
T ss_conf 517888550788855896405632530579998618001442304032033016333777642188886540365---31
Q ss_pred CEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCC--CCCCCHHHHHHHH-HHHHCCCCCCE
Q ss_conf 20331010011112223310255445675226861465431377043046134--4666315677665-44201344650
Q gi|254780583|r 90 DHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR--IFEDSYAEMFESL-EKIKSFSDKTH 166 (256)
Q Consensus 90 ~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr--~~~G~~~~l~~Sl-~kl~~Lp~~t~ 166 (256)
|..++|||.|++|++.+++..|||||+|++.|...+....||||+|...|||| |.+|.+.++|+|+ .||.+||+|++
T Consensus 97 D~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDFQqG~~~~LyesVH~kIFTLP~d~~ 176 (237)
T KOG0814 97 DLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDFQQGCPASLYESVHSKIFTLPEDYL 176 (237)
T ss_pred CCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCEEEECCEEEEECCCCCCHHCCCHHHHHHHHHHHHEECCCCEE
T ss_conf 21348897787745799985189987763799965751256246567851476303116858889988677520787518
Q ss_pred EECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHH---HHCCCCCC
Q ss_conf 20166520458898775023447899999999988857898667878999872822467898999---97388998
Q gi|254780583|r 167 IYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLR---KNLNMENA 239 (256)
Q Consensus 167 i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~---~~~~~~~~ 239 (256)
|||+|+|- |. .-||..+||+.||-|.-+-+.+. +++++..+
T Consensus 177 iYpaHdY~------------------------------G~--~~stV~EEk~~NPRLTk~~eeFv~IM~NLnL~yP 220 (237)
T KOG0814 177 IYPAHDYK------------------------------GF--LVSTVWEEKNLNPRLTKSKEEFVKIMKNLNLPYP 220 (237)
T ss_pred EEECCCCC------------------------------CE--EEEEHHHHHCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf 96535647------------------------------55--8651344533396222379999999984699971
No 5
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.94 E-value=3.3e-26 Score=190.57 Aligned_cols=156 Identities=28% Similarity=0.379 Sum_probs=126.0
Q ss_pred CCCEEEEEEECCCCEEEEECCC--CHHHHHHHHHHCCC-CEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCC-
Q ss_conf 5762699998899849998699--98999999998599-6439998589843300000111100010120001234323-
Q gi|254780583|r 12 HDNFCILIHNHKYRLTAAIDAP--DTYIISKMLREKGW-FLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIP- 87 (256)
Q Consensus 12 ~DNy~YlI~d~~t~~~viIDpg--d~~~i~~~l~~~~~-~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~- 87 (256)
.-| +|+|.++ +.+++|||| .+..+++.+++.+. ++++|++||.|+||++|+..+++.++++||+++.+...+.
T Consensus 5 ~~n-~~li~~~--~~~vliD~G~~~~~~~~~~l~~~~~~~i~~vv~TH~H~DH~gg~~~~~~~~~~~i~~~~~~~~~~~~ 81 (183)
T smart00849 5 GVN-SYLVEGD--GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKD 81 (183)
T ss_pred CCE-EEEEEEC--CEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHCHHHHHHHHCCCEEEECHHHHHHHHC
T ss_conf 418-9999989--9899992989809999999996599887499989999400330999987329989987999999861
Q ss_pred ---------------CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCC----CCCCH
Q ss_conf ---------------32203310100111122233102554456752268614654313770430461344----66631
Q gi|254780583|r 88 ---------------GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI----FEDSY 148 (256)
Q Consensus 88 ---------------~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~----~~G~~ 148 (256)
.....+.+|+.+.+|+..++++++||||+||++|++++.++|||||++|..+++.. ...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGHt~g~~~~~~~~~~vl~~GD~~~~~~~~~~~~~~~~~~~ 161 (183)
T smart00849 82 LLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASA 161 (183)
T ss_pred CHHCCCCCCCCCCCCCCCEECCCCCEEEECCEEEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf 00103333334677766167289999998998699864688788989999899999999889897987774789995659
Q ss_pred HHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 56776654420134465020166
Q gi|254780583|r 149 AEMFESLEKIKSFSDKTHIYFGH 171 (256)
Q Consensus 149 ~~l~~Sl~kl~~Lp~~t~i~pGH 171 (256)
.+..++++++..++.++ |+|||
T Consensus 162 ~~~~~~l~~~~~~~~~~-i~pgH 183 (183)
T smart00849 162 SDSLESLLKLLALDPEL-VVPGH 183 (183)
T ss_pred HHHHHHHHHHHCCCCCE-EECCC
T ss_conf 99999999987799999-97797
No 6
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.89 E-value=1.3e-22 Score=167.22 Aligned_cols=163 Identities=28% Similarity=0.397 Sum_probs=123.7
Q ss_pred EECCCEEEEEEECCCCEEEEECCCC----HHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCC-CEEEECCCCCC
Q ss_conf 1057626999988998499986999----899999999859964399985898433000001111000-10120001234
Q gi|254780583|r 10 LYHDNFCILIHNHKYRLTAAIDAPD----TYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFN-CTIFGPLEESS 84 (256)
Q Consensus 10 ~~~DNy~YlI~d~~t~~~viIDpgd----~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~-~~v~~~~~~~~ 84 (256)
.+..|.+|++.+.. ...++||+|- ...+.+.+.+.+..+++|++||.|+||+||+..+.+... ++++.+.....
T Consensus 21 ~~~~~~~~~~~~~~-~~~~liDtG~~~~~~~~~~~~l~~~~~di~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~ 99 (252)
T COG0491 21 PLSGNSVYLLVDGE-GGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPL 99 (252)
T ss_pred CCCCCEEEEEECCC-CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 56773399998489-84899949998405799999988669987789919880787827999987458734980402554
Q ss_pred -----------------CCC--CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECC--CCCC
Q ss_conf -----------------323--3220331010011112223310255445675226861465431377043046--1344
Q gi|254780583|r 85 -----------------KIP--GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLG--CGRI 143 (256)
Q Consensus 85 -----------------~i~--~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g--~Gr~ 143 (256)
..+ .....+.+++.+.+++..+++++|||||+||+||++++++++|+||.+|... +++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~ 179 (252)
T COG0491 100 LLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRL 179 (252)
T ss_pred HHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCC
T ss_conf 43012111221001211477333443357898899789269999899888558899989998999932116787677755
Q ss_pred C--CCCHHHHHHHHHHHHCCCC-CCEEECCCCC
Q ss_conf 6--6631567766544201344-6502016652
Q gi|254780583|r 144 F--EDSYAEMFESLEKIKSFSD-KTHIYFGHEY 173 (256)
Q Consensus 144 ~--~G~~~~l~~Sl~kl~~Lp~-~t~i~pGHeY 173 (256)
. ..++.++++|++++..+.. ...|+|||+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~Hg~ 212 (252)
T COG0491 180 DLPGGDAAQLLASLRRLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 557779999999999998435898599968985
No 7
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.73 E-value=1.8e-17 Score=133.96 Aligned_cols=174 Identities=21% Similarity=0.227 Sum_probs=121.3
Q ss_pred CEEEEEEECCCCEEEEECCCCHHH---HHHHHHH--CCCCEEEEEECCCCHHHHCHHHHHHH-HCCCEEEECCCCCCCCC
Q ss_conf 626999988998499986999899---9999998--59964399985898433000001111-00010120001234323
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPDTYI---ISKMLRE--KGWFLTHIFNTHHHIDHTRANLNLKK-FFNCTIFGPLEESSKIP 87 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd~~~---i~~~l~~--~~~~i~~Il~TH~H~DHigg~~~l~~-~~~~~v~~~~~~~~~i~ 87 (256)
| ||||.++ +.++||+.+..- .++.|++ ..-+|++|++.|..+||+|+++.|.+ .++++|+++......+.
T Consensus 34 N-SYLI~~e---k~aLiDtv~~~f~~e~l~~l~~vi~~~~IdYiVvnH~EPDHsg~l~~ll~~~p~~~vv~s~~~~~~l~ 109 (395)
T PRK11921 34 N-SYLIKDE---KTVLIDTVWAPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTANGAKSLK 109 (395)
T ss_pred E-EEEECCC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 7-5799689---78999289843899999999964596569999938999757899999999889999998789999999
Q ss_pred C------CCEEEEEHHCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCEEEECCCC-CCCCC--CH---------
Q ss_conf 3------2203310100111122233102554-4567522686146543137704304613-44666--31---------
Q gi|254780583|r 88 G------IDHGLSDGDTFDFGSHPIKIIATPG-HTIGHICYHFMNDHFLCVGDTLFSLGCG-RIFED--SY--------- 148 (256)
Q Consensus 88 ~------~~~~l~dgd~i~ig~~~~~vi~tPG-HT~g~i~~~~~~~~~lFtGDtLF~~g~G-r~~~G--~~--------- 148 (256)
. --+.|++||++++|+.+++++.||- |+|++++-|.+++++|||.|..=.-+|. ..|.. +.
T Consensus 110 ~~~~~~~~~~~Vk~gd~L~LG~~tL~F~~tP~lHWPdtm~Ty~~edkiLFs~DaFG~h~a~~~~fdd~~d~~~~~~ea~~ 189 (395)
T PRK11921 110 GHYHQDWNFVVVKTGDRLEIGSKELIFIEAPMLHWPDSMFCYLTGDNILFSNDAFGQHYASELMYNDLVDQGELYQEAIK 189 (395)
T ss_pred HHHCCCCCEEEECCCCEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 87288877389678988842896699997898878884379975787786035544543371000233540556999999
Q ss_pred ----------HHHHHHHHHHHCCC--CCCEEECCCCCHHH-HHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf ----------56776654420134--46502016652045-8898775023447899999999988
Q gi|254780583|r 149 ----------AEMFESLEKIKSFS--DKTHIYFGHEYTEN-NAYFALSCDPHNLELQKYCSKVKSM 201 (256)
Q Consensus 149 ----------~~l~~Sl~kl~~Lp--~~t~i~pGHeYt~~-nl~Fa~~~~p~n~~~~~~~~~~~~~ 201 (256)
.+..+.|+||..|. .+ .|+|+|-.... |.. ..++.|..|.+..
T Consensus 190 YY~nI~~p~~~~V~~~l~kl~~l~l~i~-~IaPsHGpi~r~~~~---------~i~~~Y~~ws~~~ 245 (395)
T PRK11921 190 YYANILTPFSPLVIKKIEEILSLNLPVD-MICPSHGVIWRDNPL---------QIVEKYLEWAANY 245 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCEEECCHH---------HHHHHHHHHHHCC
T ss_conf 9999866318999999999984799976-998898505447999---------9999999997467
No 8
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.70 E-value=9.6e-17 Score=129.22 Aligned_cols=176 Identities=22% Similarity=0.175 Sum_probs=121.5
Q ss_pred CEEEEEEECCCCEEEEECCCC---HHHHHHHHHHC-CC-CEEEEEECCCCHHHHCHHHHHHH-HCCCEEEECCCCCCCCC
Q ss_conf 626999988998499986999---89999999985-99-64399985898433000001111-00010120001234323
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD---TYIISKMLREK-GW-FLTHIFNTHHHIDHTRANLNLKK-FFNCTIFGPLEESSKIP 87 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~-~~-~i~~Il~TH~H~DHigg~~~l~~-~~~~~v~~~~~~~~~i~ 87 (256)
| ||||.+ ++.++|||+. .+.+++.+++. +. +|++|+..|.-+||+|++..+.+ .++++|++++.....++
T Consensus 37 N-SYLI~~---~k~aLID~~~~~f~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~ 112 (388)
T COG0426 37 N-SYLIVG---DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLK 112 (388)
T ss_pred E-EEEEEC---CCEEEECCCCCCHHHHHHHHHHHHCCHHCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf 5-589967---967998899801699999999863480017199978889633546999998688978996389999999
Q ss_pred CC------CEEEEEHHCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCEEEECCCC-CCCCCCHHH---------
Q ss_conf 32------20331010011112223310255-44567522686146543137704304613-446663156---------
Q gi|254780583|r 88 GI------DHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFSLGCG-RIFEDSYAE--------- 150 (256)
Q Consensus 88 ~~------~~~l~dgd~i~ig~~~~~vi~tP-GHT~g~i~~~~~~~~~lFtGDtLF~~g~G-r~~~G~~~~--------- 150 (256)
+. -..+++||++++|+.+++++.+| -|+||+++.|.+.+++|||+|..=.-.|+ +.|.-+.+.
T Consensus 113 ~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~~kILFS~D~fG~h~~~~~~fded~~~~~~~~~~Y~ 192 (388)
T COG0426 113 GFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPEDKILFSCDAFGAHVCDDYRFDEDIEELLPDMRKYY 192 (388)
T ss_pred HHCCCCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHHH
T ss_conf 74488541363478877644894799995787779873367624775777146566424652112467999879899999
Q ss_pred ----------HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHC
Q ss_conf ----------7766544201344650201665204588987750234--47899999999988857
Q gi|254780583|r 151 ----------MFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPH--NLELQKYCSKVKSMRSQ 204 (256)
Q Consensus 151 ----------l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~--n~~~~~~~~~~~~~~~~ 204 (256)
....++++..|+-+ .|.|||--. ... ..-+.+|..|++.+..+
T Consensus 193 ~~lm~p~~~~v~~~l~~~~~l~i~-~IaP~HG~i----------~~~~~~~i~~~Y~~W~~~~~~~ 247 (388)
T COG0426 193 ANLMAPNARLVLWALKKIKLLKIE-MIAPSHGPI----------WRGNPKEIVEAYRDWAEGQPKG 247 (388)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCC-EEECCCCCE----------EECCHHHHHHHHHHHHCCCCCC
T ss_conf 996052179999998540546741-897599852----------5579899999999997068766
No 9
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.67 E-value=2.7e-16 Score=126.26 Aligned_cols=175 Identities=20% Similarity=0.207 Sum_probs=121.0
Q ss_pred CEEEEEEECCCCEEEEECCCCH---HHHHHHHHH-CC-CCEEEEEECCCCHHHHCHHHHHHH-HCCCEEEECCCCCCCCC
Q ss_conf 6269999889984999869998---999999998-59-964399985898433000001111-00010120001234323
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPDT---YIISKMLRE-KG-WFLTHIFNTHHHIDHTRANLNLKK-FFNCTIFGPLEESSKIP 87 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd~---~~i~~~l~~-~~-~~i~~Il~TH~H~DHigg~~~l~~-~~~~~v~~~~~~~~~i~ 87 (256)
| ||||.++ +.++||+.+. +..++.|++ .+ -+|++|++-|...||.|+++.|.+ .++++|+++......+.
T Consensus 36 N-SYLI~de---K~aLIDtv~~~f~~e~l~~L~~~id~~~IDYIIvnH~EpDHSGsL~~Lle~~P~~~Iv~s~~a~~~l~ 111 (479)
T PRK05452 36 N-SYLIREE---KNVLIDTVDHKFSREFVQNLRMEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSIN 111 (479)
T ss_pred E-EEEECCC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 4-3698489---88999299762899999999974596679889968999754768999999889999998789999999
Q ss_pred ------CC-CEEEEEHHCCCCCC-CCCCCCCCCC-CCCCCCEEEECCCCCCCCCCEEEECCC-CCCCCC--C-------H
Q ss_conf ------32-20331010011112-2233102554-456752268614654313770430461-344666--3-------1
Q gi|254780583|r 88 ------GI-DHGLSDGDTFDFGS-HPIKIIATPG-HTIGHICYHFMNDHFLCVGDTLFSLGC-GRIFED--S-------Y 148 (256)
Q Consensus 88 ------~~-~~~l~dgd~i~ig~-~~~~vi~tPG-HT~g~i~~~~~~~~~lFtGDtLF~~g~-Gr~~~G--~-------~ 148 (256)
.. -+.|++||++++|+ .+++++.||= |.|++|+-|.+++++|||.|..=.-.| +++|.- + +
T Consensus 112 ~~~~~~~~~~~vVk~Gd~LdLG~GktL~Fi~tPmlHWPDsM~TY~~edkILFS~DaFG~H~~~~~~fddevd~~~~~~ea 191 (479)
T PRK05452 112 GHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQC 191 (479)
T ss_pred HHHCCCCCCEEEECCCCEEECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCEECCCCCCCCCCCHHHHHHHH
T ss_conf 85278766737846898572699846899618987788732688626756861255532122754443324568789999
Q ss_pred H------------HHHHHHHHHHC--CCCCCEEECCCCCHHH-HHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 5------------67766544201--3446502016652045-88987750234478999999999888
Q gi|254780583|r 149 A------------EMFESLEKIKS--FSDKTHIYFGHEYTEN-NAYFALSCDPHNLELQKYCSKVKSMR 202 (256)
Q Consensus 149 ~------------~l~~Sl~kl~~--Lp~~t~i~pGHeYt~~-nl~Fa~~~~p~n~~~~~~~~~~~~~~ 202 (256)
. +....|+++.+ ||-+ .|+|+|--... |. ...++.|..|.+...
T Consensus 192 ~rYYanIl~Pf~~~V~~~l~kl~~l~L~I~-~IaPsHGpI~R~~~---------~~ii~~Y~~Wa~~~~ 250 (479)
T PRK05452 192 QRYYANILTPFSRLVTPKITEILGFNLPVD-MIATSHGVVWRDNP---------TQIVELYLKWAADYQ 250 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-EEECCCCCEEECCH---------HHHHHHHHHHHHCCC
T ss_conf 999999876407999999999973799842-48757882331799---------999999999974477
No 10
>pfam00753 Lactamase_B Metallo-beta-lactamase superfamily.
Probab=99.63 E-value=1.1e-15 Score=122.32 Aligned_cols=121 Identities=23% Similarity=0.224 Sum_probs=87.8
Q ss_pred CEEEEEEECCCCEEEEECCCCHHHH----HHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC---
Q ss_conf 6269999889984999869998999----999998599643999858984330000011110001012000123432---
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPDTYII----SKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI--- 86 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd~~~i----~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i--- 86 (256)
.++|+|.++ +++++||||..... .+..+....++++|++||.|+||++|+..+.+.+....+.........
T Consensus 6 ~~~~li~~~--~~~vLiD~G~~~~~~~~~~~~~~~~~~~v~~vi~TH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
T pfam00753 6 SNSYLVEGD--GGAILIDTGLGADDALLLLAALGLDPKDIDAIILTHAHADHIGGLPELKEATPAPVVAAPEDAAALLRL 83 (148)
T ss_pred EEEEEEEEC--CEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCCEEECCHHHHHHHHH
T ss_conf 589999989--989999598991589999998379976864999799985565568999987599899826888765421
Q ss_pred -------------CCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
Q ss_conf -------------33220331010011112223310255445675226861465431377043
Q gi|254780583|r 87 -------------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLF 136 (256)
Q Consensus 87 -------------~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF 136 (256)
..........+....+...+.+..+|||++++++++.+.+++|||||++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~GD~~~ 146 (148)
T pfam00753 84 GLDDAELRKLVDVLPPDVDLEGGDGILGGGTLLFVTPHPGHGPGHVVVYLPGGKVLFTGDLLF 146 (148)
T ss_pred HHCCCCCCCCCCCCCCEEEECCCEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEECCCCC
T ss_conf 000010024666666505405741992498899999789988985999999999999898267
No 11
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.17 E-value=4.3e-11 Score=92.57 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=91.0
Q ss_pred CEEEEEEECCCCEEEEECCCC----H-----HH---HHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCC-CEEEECC
Q ss_conf 626999988998499986999----8-----99---999999859964399985898433000001111000-1012000
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD----T-----YI---ISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFN-CTIFGPL 80 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd----~-----~~---i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~-~~v~~~~ 80 (256)
| +|++.-. ++.+++|.|- . +. -..+++++..++++|++||+|.||+||++.|....+ +|||++.
T Consensus 23 N-~~vve~~--~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~ 99 (555)
T COG0595 23 N-MYVVEYG--DDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASP 99 (555)
T ss_pred C-EEEEEEC--CCEEEEECCCCCCCCCCCCCCEEECCHHHHHHCCCCCEEEEECCCCHHHCCCHHHHHHCCCCCCEECCH
T ss_conf 2-3899978--968999776566864355555882582774315002139994687444323467898527768444477
Q ss_pred CCCCCC----------C--CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCEEEEC
Q ss_conf 123432----------3--3220331010011112223310255445675226861--46543137704304
Q gi|254780583|r 81 EESSKI----------P--GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM--NDHFLCVGDTLFSL 138 (256)
Q Consensus 81 ~~~~~i----------~--~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~--~~~~lFtGDtLF~~ 138 (256)
-....+ . .--+.++.++.+++++++++++.+--=-|++++|.+. ...+++|||.-|-.
T Consensus 100 lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d~ 171 (555)
T COG0595 100 LTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDP 171 (555)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEECCCCCCCEEEEEECCCCCEEEECCEEECC
T ss_conf 669999989887321135674399479985776767999996035574516899987984389968778558
No 12
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=99.15 E-value=9.8e-11 Score=90.29 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=88.8
Q ss_pred CEEEEEEECCCCEEEEECCC---C-----HH----HH-------------HHHHHHCCCCEEEEEECCCCHHHHCHHHHH
Q ss_conf 62699998899849998699---9-----89----99-------------999998599643999858984330000011
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAP---D-----TY----II-------------SKMLREKGWFLTHIFNTHHHIDHTRANLNL 68 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpg---d-----~~----~i-------------~~~l~~~~~~i~~Il~TH~H~DHigg~~~l 68 (256)
| +|.+. -.++++++|.| + .+ .+ ..+|+++.-++++|++||+|-||+||+++|
T Consensus 15 N-m~vve--~~~ev~i~D~G~~~PRVlIHed~di~~~~G~dL~~~~vIPD~~~l~~~~~kvkgI~~tHGH~DHIGav~yL 91 (593)
T TIGR00649 15 N-MTVVE--VDDEVVIIDAGIRFPRVLIHEDTDIAEMLGVDLIEKGVIPDFTYLKENEDKVKGIVITHGHEDHIGAVPYL 91 (593)
T ss_pred C-EEEEE--ECCEEEEEECCCCCCCEEEECCCCHHHHCCHHHHHCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHH
T ss_conf 2-38998--77859998232237964641552035440411432031689616752125067889708710001228889
Q ss_pred HHHCC-CEEEECCCCCCC------------CCCC-CEEEEEHHCCCCC---CCCCCCCCCCCCC-CCCCEEEE--CCCCC
Q ss_conf 11000-101200012343------------2332-2033101001111---2223310255445-67522686--14654
Q gi|254780583|r 69 KKFFN-CTIFGPLEESSK------------IPGI-DHGLSDGDTFDFG---SHPIKIIATPGHT-IGHICYHF--MNDHF 128 (256)
Q Consensus 69 ~~~~~-~~v~~~~~~~~~------------i~~~-~~~l~dgd~i~ig---~~~~~vi~tPGHT-~g~i~~~~--~~~~~ 128 (256)
...++ +||||++-.... ...- -..+..++.++++ ++.++++++- |+ |+|+++-+ +..-+
T Consensus 92 ~~~~~~~PiYGt~lt~~L~~~ki~~E~~l~~~~~yl~~~~~~~~~~~~~i~~~~~eFir~t-HSIPdS~~~a~hTp~G~I 170 (593)
T TIGR00649 92 LHQYGFPPIYGTPLTIALIKSKIKAEHGLNVRTDYLQEINEGEPVQVGKIENFAIEFIRVT-HSIPDSVGLALHTPEGSI 170 (593)
T ss_pred HHHCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCHHHEECCCCEEEEEECCCEEEEEEEEE-ECCCCCEEEEEECCCCEE
T ss_conf 8656888240437899999998865420022575021015896088875064388457714-324122188897698349
Q ss_pred CCCCCEEEE
Q ss_conf 313770430
Q gi|254780583|r 129 LCVGDTLFS 137 (256)
Q Consensus 129 lFtGDtLF~ 137 (256)
+++||.-|=
T Consensus 171 Vy~~DFKfD 179 (593)
T TIGR00649 171 VYAGDFKFD 179 (593)
T ss_pred EEECCEEEE
T ss_conf 983254553
No 13
>PRK11539 hypothetical protein; Provisional
Probab=99.13 E-value=1.2e-09 Score=83.35 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=101.3
Q ss_pred EEEEEECCCCEEEEECCCC--------HHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCC-CEEEECCCCCCCC
Q ss_conf 6999988998499986999--------899999999859964399985898433000001111000-1012000123432
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD--------TYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFN-CTIFGPLEESSKI 86 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd--------~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~-~~v~~~~~~~~~i 86 (256)
+-+|. ..++++++|.|. ...+..+++.+|.+++++++||.|.||+||...+.+.+. ..++.+......
T Consensus 511 avlI~--~~~~~~L~DtG~~~~~~~~g~~vi~P~L~~~Gi~lD~lvlSH~D~DH~GGl~~ll~~~p~~~i~~~~~~~~~- 587 (754)
T PRK11539 511 AMVIE--RNGKAILYDTGNAWPEGDSAQQVIIPWLRWHNLTPEGVILSHEHLDHRGGLASLLHAWPMAWIRSPLNWANH- 587 (754)
T ss_pred EEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHCCCEEEECCCCCCCC-
T ss_conf 89999--899789995799888887237788999996799720899458850012689999984883099865665676-
Q ss_pred CCCCEEEEEHHCCCCCCCCCCCCCCCCC-----CCCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 3322033101001111222331025544-----567522686146--54313770430461344666315677665442-
Q gi|254780583|r 87 PGIDHGLSDGDTFDFGSHPIKIIATPGH-----TIGHICYHFMND--HFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI- 158 (256)
Q Consensus 87 ~~~~~~l~dgd~i~ig~~~~~vi~tPGH-----T~g~i~~~~~~~--~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl- 158 (256)
.....|+.++.++.++++++-|-. -.+|+++.+... .+|||||. |...|+ +=+++-
T Consensus 588 ----~~c~~G~~~~~~g~~~~vL~P~~~~~~~~N~~ScVl~i~~g~~s~LltGDi----------e~~~E~--~Ll~~~~ 651 (754)
T PRK11539 588 ----LPCVRGERWQWQGLTFSVHWPLQQSNDAGNNDSCVVKVDDGKHSILLTGDI----------EAQAEQ--KMLSRYW 651 (754)
T ss_pred ----CCEECCCEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEECCC----------CHHHHH--HHHHCCC
T ss_conf ----551168789999989999779986789999884899999899689996279----------989999--9986376
Q ss_pred HCCCCCCEEECCCCC-HHHHHHHHHHCCCC
Q ss_conf 013446502016652-04588987750234
Q gi|254780583|r 159 KSFSDKTHIYFGHEY-TENNAYFALSCDPH 187 (256)
Q Consensus 159 ~~Lp~~t~i~pGHeY-t~~nl~Fa~~~~p~ 187 (256)
..|.-|.++-|=|-- |-+.-.|-..+.|+
T Consensus 652 ~~L~~dVLkvpHHGSktSSs~~Fl~~v~P~ 681 (754)
T PRK11539 652 QQLQATLLQVPHHGSNTSSSLPFIQRVNGE 681 (754)
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHCCCC
T ss_conf 688886898899897846659999854999
No 14
>PRK00055 ribonuclease Z; Reviewed
Probab=99.11 E-value=1.2e-10 Score=89.72 Aligned_cols=117 Identities=23% Similarity=0.255 Sum_probs=80.3
Q ss_pred EEEEEEECCCCEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHH-------CCCEEEECCCCCC
Q ss_conf 269999889984999869998999999998599---643999858984330000011110-------0010120001234
Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKF-------FNCTIFGPLEESS 84 (256)
Q Consensus 15 y~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~-------~~~~v~~~~~~~~ 84 (256)
-||+|... +..++||+|..- ...+.+.++ ++++|++||.|+||+.|...|... ...+||++.....
T Consensus 21 s~~li~~~--~~~iliD~G~G~--~~~l~~~~~~~~~l~~I~iTH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gp~~~~~ 96 (259)
T PRK00055 21 SSILLRLG--GELWLFDCGEGT--QRQMLRAGIGPRKIDRIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKE 96 (259)
T ss_pred CEEEEEEC--CEEEEEECCCHH--HHHHHHCCCCHHHCCEEEEECCCHHHHCHHHHHHHHHHHCCCCCCEEEEECHHHHH
T ss_conf 88999999--908999588159--99999819995576589996433576652899999987459997169991778999
Q ss_pred CCC--------CCC--------EEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCEEE
Q ss_conf 323--------322--------033101001111222331025544567522686146--5431377043
Q gi|254780583|r 85 KIP--------GID--------HGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND--HFLCVGDTLF 136 (256)
Q Consensus 85 ~i~--------~~~--------~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~--~~lFtGDtLF 136 (256)
.+. ... .....+..++.|+.+++.+.++ |...++.|.++.+ .++|+|||-+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~s~Gyri~~~g~~i~ysgDt~~ 165 (259)
T PRK00055 97 FVETLLRASGSHLPYRIAIHEIDEKTEGVVFDDDGFTVTAFPLD-HSIPCLGYRFEEKGRKIAYVGDTRP 165 (259)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCEEEEEEECC-CCCCEEEEEEEECCCEEEEECCCCC
T ss_conf 99999885066889725676325798732896499899999867-9986279999968816999527886
No 15
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.03 E-value=2.2e-09 Score=81.50 Aligned_cols=159 Identities=17% Similarity=0.149 Sum_probs=103.0
Q ss_pred EEEEEECCCCEEEEECCCC---HHHHHHHHHHCCCC-EEEEEECCCCHHHHCHHHHHHHHCCC-EEEECCCCCCCC----
Q ss_conf 6999988998499986999---89999999985996-43999858984330000011110001-012000123432----
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD---TYIISKMLREKGWF-LTHIFNTHHHIDHTRANLNLKKFFNC-TIFGPLEESSKI---- 86 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~~~~-i~~Il~TH~H~DHigg~~~l~~~~~~-~v~~~~~~~~~i---- 86 (256)
+-++..+. ...++|+|. ...|+.+|+++|++ |+.+++||.|.||+||..++.+.+.. ++|.........
T Consensus 56 a~li~~~~--~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~ 133 (293)
T COG2333 56 ATLIRSEG--KTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVL 133 (293)
T ss_pred EEEEEECC--CEEEEECCCCCCCEEEHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHH
T ss_conf 78985189--1188625754472436355767498601378931687444478999985288771798278776514556
Q ss_pred ---CCCCEEEEEHHCCCCCCCCCCCCCCCCCCC-----CCCEEEEC--CCCCCCCCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf ---332203310100111122233102554456-----75226861--46543137704304613446663156776654
Q gi|254780583|r 87 ---PGIDHGLSDGDTFDFGSHPIKIIATPGHTI-----GHICYHFM--NDHFLCVGDTLFSLGCGRIFEDSYAEMFESLE 156 (256)
Q Consensus 87 ---~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~-----g~i~~~~~--~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~ 156 (256)
.......+.|+.+.+++..++++.-++.+. .|+.+++. +..+|||||.= ...+ -.-++
T Consensus 134 ~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e-----------~~~E-~~l~~ 201 (293)
T COG2333 134 RDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLE-----------EKGE-KLLKK 201 (293)
T ss_pred HHCCCCEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEECCCC-----------HHHH-HHHHH
T ss_conf 53377412001275478888579997688666655567625999995891699965787-----------0568-99984
Q ss_pred HHHCCCCCCEEECCC-CCHHHHHHHHHHCCCCC
Q ss_conf 420134465020166-52045889877502344
Q gi|254780583|r 157 KIKSFSDKTHIYFGH-EYTENNAYFALSCDPHN 188 (256)
Q Consensus 157 kl~~Lp~~t~i~pGH-eYt~~nl~Fa~~~~p~n 188 (256)
.-..|.-|.+.-+.| -+|-+...|...+.|..
T Consensus 202 ~~~~l~~dVLkV~HHGS~tSss~~Fl~~v~Pk~ 234 (293)
T COG2333 202 YGPDLRADVLKVGHHGSKTSSSLAFLEAVKPKV 234 (293)
T ss_pred HCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCE
T ss_conf 378744208981667766567288997439847
No 16
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.95 E-value=1.1e-08 Score=76.93 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=55.0
Q ss_pred EEEEEEECCCCEEEEECCC-CHHHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHH--HCCCEEEECCCC
Q ss_conf 2699998899849998699-989999999985996---4399985898433000001111--000101200012
Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAP-DTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKK--FFNCTIFGPLEE 82 (256)
Q Consensus 15 y~YlI~d~~t~~~viIDpg-d~~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~--~~~~~v~~~~~~ 82 (256)
+|+||-++ +..++.|+| ++..++.-++..|++ +++++++|+||||+||+..+.+ ..+.+||+|+..
T Consensus 23 fS~LVE~~--~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a 94 (259)
T COG1237 23 FSALVEDE--GTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA 94 (259)
T ss_pred EEEEEECC--CEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEECHHH
T ss_conf 49999758--7179995799857888779981998134747998578731347567687526778507868588
No 17
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=98.91 E-value=1.8e-08 Score=75.66 Aligned_cols=113 Identities=22% Similarity=0.289 Sum_probs=73.1
Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHH--HHCCCEEEECCCCC-----CCCC-
Q ss_conf 699998899849998699989999999985996439998589843300000111--10001012000123-----4323-
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLK--KFFNCTIFGPLEES-----SKIP- 87 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~--~~~~~~v~~~~~~~-----~~i~- 87 (256)
|.+|... +..++||+|-.+ +.+.+.. -+|++|++||.|.||+.|...|+ +....+||++.... .+.+
T Consensus 39 s~lv~~~--~~~iLID~g~~d-l~~~~~~--~~iDaVllTH~H~DHi~GlddlR~~~~~~ipvy~~~~~~~~~~l~~~~~ 113 (250)
T PRK11244 39 SALLEFN--GARTLIDAGLHD-LAERFPP--GSLQAFLLTHYHMDHVQGLFPLRWGVGDVIPVYGPPDPEGCDDLFKHPG 113 (250)
T ss_pred EEEEEEC--CEEEEEECCCHH-HHHHCCC--CCCCEEEEECCCHHHHCCHHHHHHCCCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 8999989--927999898089-9975555--6877899825753343376888713798356773775778999850788
Q ss_pred --CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCE
Q ss_conf --322033101001111222331025544567522686146--54313770
Q gi|254780583|r 88 --GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND--HFLCVGDT 134 (256)
Q Consensus 88 --~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~--~~lFtGDt 134 (256)
...+.+..++.+++++.++..+... |..-+..|.++.. ++++++|+
T Consensus 114 ~~~~~~~~~~~~~~~i~g~~itp~~~~-Hg~~~~Gy~i~~~g~~~aY~tD~ 163 (250)
T PRK11244 114 ILDFSHPLEAFEPFDLGGLQVTPLPLN-HSKLTFGYLLETAHSRFAYLTDT 163 (250)
T ss_pred CCCCCCCCCCCCCEEECCEEEEEEEEC-CCCCCEEEEEECCCCEEEEECCC
T ss_conf 434236658888668688389999977-88973699996489329996677
No 18
>PRK02113 putative hydrolase; Provisional
Probab=98.87 E-value=1.1e-08 Score=77.10 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=87.0
Q ss_pred CEEEEEEECCCCEEEEECCC-CHHHHHHHHHHCCC-CEEEEEECCCCHHHHCHHHHHHHH---CCCEEEECCCCCCCC--
Q ss_conf 62699998899849998699-98999999998599-643999858984330000011110---001012000123432--
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAP-DTYIISKMLREKGW-FLTHIFNTHHHIDHTRANLNLKKF---FNCTIFGPLEESSKI-- 86 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpg-d~~~i~~~l~~~~~-~i~~Il~TH~H~DHigg~~~l~~~---~~~~v~~~~~~~~~i-- 86 (256)
+-|.+|..+ +..++||+| |. ...+.+.++ ++++|++||.|.||++|..+|+.. -..+||+++.....+
T Consensus 35 r~s~lv~~~--~~~iLID~gpD~---r~Q~lr~~i~~iDavllTH~H~DHi~GlddLR~f~~~~~ipvy~~~~t~~~l~~ 109 (252)
T PRK02113 35 RTSALVETE--GARILIDCGPDF---REQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRS 109 (252)
T ss_pred EEEEEEEEC--CCEEEEECCCCH---HHHHHHCCCCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHH
T ss_conf 648999989--927999689138---999987798761489997457044269899998854587446657899999986
Q ss_pred -----------CC---C-CEEEEEHHCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf -----------33---2-203310100111122233102554456-7522686146543137704304613446663156
Q gi|254780583|r 87 -----------PG---I-DHGLSDGDTFDFGSHPIKIIATPGHTI-GHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAE 150 (256)
Q Consensus 87 -----------~~---~-~~~l~dgd~i~ig~~~~~vi~tPGHT~-g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~ 150 (256)
++ + -+.+..+..+.++++++..+.++ |.. ..+.|.+ |+..+...|+.+++.+.+.
T Consensus 110 ~~~y~f~~~~~~~~~~l~~~~i~~~~~f~i~~~~v~p~~v~-Hg~~~~~G~ri--------g~~aY~tD~~~ip~~~~~~ 180 (252)
T PRK02113 110 RMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--------GKMAYITDMLTMPEEEYEQ 180 (252)
T ss_pred HCHHHHCCCCCCCCCCCEEEEECCCCCEEECEEEEEEEEEC-CCCCEECCEEC--------CCEEEECCCCCCCHHHHHH
T ss_conf 33112146888886563157715999467420799878506-88821644750--------4469937876579899997
Q ss_pred HHHHHHH--HHCCCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 7766544--20134465020166520458898775023
Q gi|254780583|r 151 MFESLEK--IKSFSDKTHIYFGHEYTENNAYFALSCDP 186 (256)
Q Consensus 151 l~~Sl~k--l~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p 186 (256)
| +.++- +-.|... =.|.|-.....++++..+-|
T Consensus 181 L-~~~D~liid~l~~~--~h~sH~~~~eal~~~~~i~p 215 (252)
T PRK02113 181 L-QGIDVLVMNALRIA--PHPTHQSLEEALENIKRIGA 215 (252)
T ss_pred H-CCCCEEEEECCCCC--CCCCCCCHHHHHHHHHHHCC
T ss_conf 5-35885787435679--99997899999999997099
No 19
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.82 E-value=6e-08 Score=72.23 Aligned_cols=113 Identities=23% Similarity=0.295 Sum_probs=70.8
Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHH--HCCCEEEECCCCC-----CCCCC
Q ss_conf 6999988998499986999899999999859964399985898433000001111--0001012000123-----43233
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK--FFNCTIFGPLEES-----SKIPG 88 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~--~~~~~v~~~~~~~-----~~i~~ 88 (256)
|-+|... +.-++||+|-++ +.+.+.. -+|++||+||.|+||+.|...|+- .-..+||++.... -+.++
T Consensus 39 s~li~~~--~~~iLID~g~pd-lr~ql~~--~~IdaVllTH~H~DHi~GlddlR~~~~~~ipvy~~~~~~~~~~~~~~~~ 113 (249)
T TIGR03307 39 SAVIEVN--GVRTLIDAGLTD-LAERFPP--GSLQAILLTHYHMDHVQGLFPLRWGMGEPIPVYGPPDPEGCDDLFKHPG 113 (249)
T ss_pred EEEEEEC--CCEEEEECCCHH-HHHHCCC--CCCCEEEEECCCHHHHCCCHHHHHCCCCCEEEEECCCHHHHHHHHCCCC
T ss_conf 8999989--928999899779-9986051--6878899965334544662445521688657886887889999862698
Q ss_pred ---CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCE
Q ss_conf ---22033101001111222331025544567522686146--54313770
Q gi|254780583|r 89 ---IDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND--HFLCVGDT 134 (256)
Q Consensus 89 ---~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~--~~lFtGDt 134 (256)
....+..++.+.++++++..+.+. |..-+..|.++.+ ++.++.|+
T Consensus 114 ~~~~~~~~~~~~~~~i~g~~i~p~~~~-H~~~~~Gy~i~~~g~~~aY~tD~ 163 (249)
T TIGR03307 114 ILDFSKPLLAFEPFHLGGLRVTPVPLV-HSKLTFGYLLETDGQRLAYLTDT 163 (249)
T ss_pred CCCCCCCCCCCCCEEECCEEEEEEEEE-CCCCCEEEEEECCCCEEEEECCC
T ss_conf 424346547989677398189999996-07864699995189559996788
No 20
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=98.77 E-value=3.5e-09 Score=80.21 Aligned_cols=129 Identities=18% Similarity=0.246 Sum_probs=79.1
Q ss_pred CCEE-EEEEECC--CEEEEEEECCCCEEEEECCCC-----HHHHHHHHH--HCCC-CEEEEEECCCCHHHHCHHHHHHH-
Q ss_conf 6145-3011057--626999988998499986999-----899999999--8599-64399985898433000001111-
Q gi|254780583|r 3 SLNI-AISLYHD--NFCILIHNHKYRLTAAIDAPD-----TYIISKMLR--EKGW-FLTHIFNTHHHIDHTRANLNLKK- 70 (256)
Q Consensus 3 ~~~i-~ip~~~D--Ny~YlI~d~~t~~~viIDpgd-----~~~i~~~l~--~~~~-~i~~Il~TH~H~DHigg~~~l~~- 70 (256)
|..| ++.+.++ --|+|+.... .-+++|.|- ...-..++. +..+ +|++|++||.|.||+|.++.|.+
T Consensus 174 ~vrit~LG~~~eVGRSc~l~~~~~--~~illDcG~~~~~~~~~~~P~~d~~e~~~~~IDAVvlTHAHLDH~G~LP~L~k~ 251 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLSTPE--SRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY 251 (630)
T ss_pred EEEEEECCCCCCCCCEEEEEECCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHC
T ss_conf 499983467670264589996398--179998888877777545886567779801185899833532125632188764
Q ss_pred HCCCEEEECCCCCCC----------C-------C-----------CCCEEEEEHHCCCCC-CCCCCCCCCCCCCCCCCEE
Q ss_conf 000101200012343----------2-------3-----------322033101001111-2223310255445675226
Q gi|254780583|r 71 FFNCTIFGPLEESSK----------I-------P-----------GIDHGLSDGDTFDFG-SHPIKIIATPGHTIGHICY 121 (256)
Q Consensus 71 ~~~~~v~~~~~~~~~----------i-------~-----------~~~~~l~dgd~i~ig-~~~~~vi~tPGHT~g~i~~ 121 (256)
-|..|||+.....+. + + .....+.=++.++++ +.++++. --||-.||-++
T Consensus 252 Gf~GpIy~T~pT~dL~~llL~D~~ki~~~e~~~plYt~~dv~~~l~~~~~l~y~~~~~i~~~ik~tf~-~AGHILGSAmv 330 (630)
T TIGR03675 252 GYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFY-NAGHILGSAIA 330 (630)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCEEEEEE-CCCCCCEEEEE
T ss_conf 88898886545999999999989999870589999899999999844562489985971798499997-68861044799
Q ss_pred EEC--CC--CCCCCCCE
Q ss_conf 861--46--54313770
Q gi|254780583|r 122 HFM--ND--HFLCVGDT 134 (256)
Q Consensus 122 ~~~--~~--~~lFtGDt 134 (256)
++. +. +++||||.
T Consensus 331 ~l~i~~g~~~ilfTGD~ 347 (630)
T TIGR03675 331 HLHIGDGLYNIVYTGDF 347 (630)
T ss_pred EEEECCCCEEEEEECCC
T ss_conf 99976896799995998
No 21
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.4e-08 Score=74.82 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=75.9
Q ss_pred EEEEEEECCCCEEEEECCCCHHH----HHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHH-HCCCEEEECCCCCC-----
Q ss_conf 26999988998499986999899----999999859964399985898433000001111-00010120001234-----
Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDTYI----ISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK-FFNCTIFGPLEESS----- 84 (256)
Q Consensus 15 y~YlI~d~~t~~~viIDpgd~~~----i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~-~~~~~v~~~~~~~~----- 84 (256)
.+.++... +..+++|+|.... ......... +++++++||.|.||+|+.+.+.. .+..+||+......
T Consensus 15 s~~~l~~~--~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~ 91 (427)
T COG1236 15 SCVLLETG--GTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVL 91 (427)
T ss_pred EEEEEEEC--CCEEEECCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCHHHHCCCHHHHHHCCCCCEEECHHHHHHHHHH
T ss_conf 46898747--97699658988576765576788888-7677996006524323467887631278657535189999987
Q ss_pred -----CCC-----------------CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCE
Q ss_conf -----323-----------------3220331010011112223310255445675226861--4654313770
Q gi|254780583|r 85 -----KIP-----------------GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM--NDHFLCVGDT 134 (256)
Q Consensus 85 -----~i~-----------------~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~--~~~~lFtGDt 134 (256)
++. ...+.+.=|+.+++++++++++. -||.+|+-.|+++ +..++||||.
T Consensus 92 l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~-AGHilGsa~~~le~~~~~ilytGD~ 164 (427)
T COG1236 92 LGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYN-AGHILGSAAILLEVDGGRILYTGDV 164 (427)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEEC-CCCCCCEEEEEEEECCCEEEEEECC
T ss_conf 311101035777776543456655522277058981786528999971-7974102799999689479998236
No 22
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.57 E-value=6.5e-07 Score=65.50 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=70.8
Q ss_pred EEEEEECCCCEEEEECCC-CHH-HHHHH--HH-HCC---CCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC-
Q ss_conf 699998899849998699-989-99999--99-859---9643999858984330000011110001012000123432-
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAP-DTY-IISKM--LR-EKG---WFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI- 86 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpg-d~~-~i~~~--l~-~~~---~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i- 86 (256)
|-.| ..+++..++||++ |.. ++.+. +. +.+ -.|++|++||.|.||+.|+..|++..+.+||+.......+
T Consensus 41 Si~v-~~dg~~~~LiDasPDlr~QL~~~~~l~p~~~~r~s~i~~V~lTHaH~dH~~GL~~LRe~~~i~vya~~~~~~~L~ 119 (302)
T PRK05184 41 SIAV-SADGEDWVLVNASPDIRQQIRATPALQPARGLRDTPIAAVVLTDGQIDHVTGLLSLREGQPFPLYATPMVLEDLS 119 (302)
T ss_pred EEEE-ECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHCCHHHHHCCCCCCEEECHHHHHHHH
T ss_conf 8999-828986999989938999986514417543445787348998657500331788871569720674689999998
Q ss_pred ---C---------CCC-EEEEEHHCCCC---CCCCCCCCCCCCCCC------------CCCEEEECCCCCCCCCCEEEEC
Q ss_conf ---3---------322-03310100111---122233102554456------------7522686146543137704304
Q gi|254780583|r 87 ---P---------GID-HGLSDGDTFDF---GSHPIKIIATPGHTI------------GHICYHFMNDHFLCVGDTLFSL 138 (256)
Q Consensus 87 ---~---------~~~-~~l~dgd~i~i---g~~~~~vi~tPGHT~------------g~i~~~~~~~~~lFtGDtLF~~ 138 (256)
| .+. +.+...+.+++ ++++++.+.+||.-| +.+.|.+.+..- .+-.+|.-
T Consensus 120 ~~~p~~~~l~~~~~v~~~~i~~~~~~~~~~~~gl~v~p~~Vp~k~p~~~~h~~~~~~~etvG~~i~~~~~--gk~~~Yip 197 (302)
T PRK05184 120 TGFPIFNVLDHYCGVDRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRGDPHPGDNIGLRIEDTAT--GRRLFYAP 197 (302)
T ss_pred HCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC--CEEEEEEC
T ss_conf 6398878533346621024146886234787981899986488777654445678768468999972788--71799944
Q ss_pred CCCCC
Q ss_conf 61344
Q gi|254780583|r 139 GCGRI 143 (256)
Q Consensus 139 g~Gr~ 143 (256)
+|.++
T Consensus 198 D~~~~ 202 (302)
T PRK05184 198 GLAEV 202 (302)
T ss_pred CCCCC
T ss_conf 85656
No 23
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.55 E-value=3e-08 Score=74.18 Aligned_cols=120 Identities=20% Similarity=0.193 Sum_probs=73.2
Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCCC---CCEE
Q ss_conf 6999988998499986999899999999859964399985898433000001111000101200012343233---2203
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPG---IDHG 92 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~~---~~~~ 92 (256)
+++|.. .+..++|||--...-...++...+++++|++||.|+||.+....+.+..+++++++......+.. -...
T Consensus 10 ~~li~~--~g~~iLiDP~~s~~~~~~~~~~~~~~D~VliSH~H~DHl~d~~~~~~~~~~~~i~p~~~~~~~~~~g~~~~~ 87 (228)
T PRK00685 10 AFRIET--GGKKILIDPFLTGNPKADLKPEDVKVDHILLTHGHGDHVGDTVEIAKRTGAVVVANFELATYLGWQGVKTHP 87 (228)
T ss_pred EEEEEE--CCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEECHHHHHHHHHCCCCEEE
T ss_conf 999998--999999888668998778885446799999668883435658888751599899636899999865981899
Q ss_pred EEEHHCCCCCCCCCCCC---CCCC--------CCCCC-CEEEEC--CCCCCCCCCEEEE
Q ss_conf 31010011112223310---2554--------45675-226861--4654313770430
Q gi|254780583|r 93 LSDGDTFDFGSHPIKII---ATPG--------HTIGH-ICYHFM--NDHFLCVGDTLFS 137 (256)
Q Consensus 93 l~dgd~i~ig~~~~~vi---~tPG--------HT~g~-i~~~~~--~~~~lFtGDtLF~ 137 (256)
++.|+++++++.+++++ |.++ +..|. ..|.++ +..+.|+|||-+.
T Consensus 88 ~~~~~~~~~~gi~i~~vpa~H~~~~~~~~~~~~~~g~~~g~vi~~~g~~iy~~GDT~~~ 146 (228)
T PRK00685 88 MNIGGTVEFDGGKVKFTQALHSSSYITEDGVSIYLGNPAGIVFTFEGKTIYHAGDTDLF 146 (228)
T ss_pred ECCCCEEEECCEEEEEEECCCCCCCCCCCCCCEECCCCEEEEEEECCEEEEEECCCCCC
T ss_conf 32787499788899999665466655778862687787799999799389983376665
No 24
>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=98.39 E-value=1.1e-06 Score=64.16 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=76.6
Q ss_pred EEEECCC-EEEEEEEC-CCCEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHH---------CC
Q ss_conf 0110576-26999988-9984999869998999999998599---643999858984330000011110---------00
Q gi|254780583|r 8 ISLYHDN-FCILIHNH-KYRLTAAIDAPDTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKF---------FN 73 (256)
Q Consensus 8 ip~~~DN-y~YlI~d~-~t~~~viIDpgd~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~---------~~ 73 (256)
+|.-.=| -|++|.-. +.++.+++|+|+.-+ ..+.+.++ +|+.|++||.|.||+-|++-|.+- -+
T Consensus 11 ~Pt~~Rn~~si~l~~~~e~g~~~LFDCGEGTQ--~Q~~~~~~~~~~i~~IFITH~HGDHi~GLPGLl~t~sf~G~~r~~p 88 (327)
T TIGR02651 11 VPTKERNVSSIALKLEDERGELWLFDCGEGTQ--RQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGGGRKEP 88 (327)
T ss_pred CCCCCCCCCEEEEECHHHCCCEEEEECCCHHH--HHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 87756477589996022428742554771899--9999716886311136870663145542368888310378886445
Q ss_pred CEEEECCCCCCCCCC-------------CCEEEE-----------------EHHCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 101200012343233-------------220331-----------------01001111222331025544567522686
Q gi|254780583|r 74 CTIFGPLEESSKIPG-------------IDHGLS-----------------DGDTFDFGSHPIKIIATPGHTIGHICYHF 123 (256)
Q Consensus 74 ~~v~~~~~~~~~i~~-------------~~~~l~-----------------dgd~i~ig~~~~~vi~tPGHT~g~i~~~~ 123 (256)
..||||+.-..-+.. .-+.+. ++-.++.++++|+++.+- |+-.|+.|.+
T Consensus 89 L~IyGP~G~~e~~~~~l~~~~~~~~y~i~~~E~~~~~~~P~~~~~k~k~l~~~~~~~~~~f~v~~~~l~-H~~~~~GY~~ 167 (327)
T TIGR02651 89 LTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEKGVLPEFVVYKEKLLEDGLVFEDDGFKVEAFPLD-HSIPSLGYRF 167 (327)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHCCCEEECCEEEECCCEEEEEEECC-CCCEEEEEEE
T ss_conf 288687447999999998622378841599972689977312310256120232676584489999505-7841467899
Q ss_pred CCC
Q ss_conf 146
Q gi|254780583|r 124 MND 126 (256)
Q Consensus 124 ~~~ 126 (256)
.+.
T Consensus 168 ~Ek 170 (327)
T TIGR02651 168 EEK 170 (327)
T ss_pred EEC
T ss_conf 863
No 25
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.36 E-value=5.9e-06 Score=59.34 Aligned_cols=54 Identities=28% Similarity=0.250 Sum_probs=36.5
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEEC
Q ss_conf 8499986999899999999859964399985898433000001111000101200
Q gi|254780583|r 25 RLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGP 79 (256)
Q Consensus 25 ~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~ 79 (256)
.+.++||.|-. ...+.+...--.+++|++||.|+||+.|...|++.+..+++..
T Consensus 40 ~~~~lid~g~~-~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~ 93 (269)
T COG1235 40 VKTLLIDAGPD-LRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYTLPIYVN 93 (269)
T ss_pred CEEEEEECCHH-HHHHHHHHCCCCCCEEEEECCCHHHHCCHHHHHHHHCCCCEEE
T ss_conf 04799942877-7654233067645679991585676578888998855884575
No 26
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.29 E-value=4.3e-07 Score=66.67 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=75.7
Q ss_pred EEEECC--CEEEEEEECCCCEEEEECCCC--------HHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH-CCCEE
Q ss_conf 011057--626999988998499986999--------8999999998599643999858984330000011110-00101
Q gi|254780583|r 8 ISLYHD--NFCILIHNHKYRLTAAIDAPD--------TYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF-FNCTI 76 (256)
Q Consensus 8 ip~~~D--Ny~YlI~d~~t~~~viIDpgd--------~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~-~~~~v 76 (256)
+..+.. --|+|+..++++ +++|.|. +-+.+..-+-.-..|+||++||.|-||+|-++.|-++ |+-||
T Consensus 186 LGg~~EVGRSa~lv~T~eSr--VLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPV 263 (637)
T COG1782 186 LGGFREVGRSALLVSTPESR--VLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPV 263 (637)
T ss_pred ECCCHHCCCEEEEEECCCCE--EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCE
T ss_conf 12411206256997368833--8996365677886435744556102512053699850234434521456651788874
Q ss_pred EECCCCCCC------------------CCC----------CCEEEEEHHCCCCC-CCCCCCCCCCCCCCCCCEEEE--CC
Q ss_conf 200012343------------------233----------22033101001111-222331025544567522686--14
Q gi|254780583|r 77 FGPLEESSK------------------IPG----------IDHGLSDGDTFDFG-SHPIKIIATPGHTIGHICYHF--MN 125 (256)
Q Consensus 77 ~~~~~~~~~------------------i~~----------~~~~l~dgd~i~ig-~~~~~vi~tPGHT~g~i~~~~--~~ 125 (256)
|+.....+. .|- .++.+.=|+.-++. +.++. ++--||-.||-+-++ .+
T Consensus 264 Y~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLT-f~NAGHILGSA~~HlHIGd 342 (637)
T COG1782 264 YCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLT-FYNAGHILGSAMAHLHIGD 342 (637)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCEEE-EECCCCHHCCEEEEEEECC
T ss_conf 317971889999988799999964999998878999887545410257624468761789-8416410131015888648
Q ss_pred --CCCCCCCCEEEE
Q ss_conf --654313770430
Q gi|254780583|r 126 --DHFLCVGDTLFS 137 (256)
Q Consensus 126 --~~~lFtGDtLF~ 137 (256)
.+++||||.=|.
T Consensus 343 GlyNi~yTGDfk~~ 356 (637)
T COG1782 343 GLYNIVYTGDFKFE 356 (637)
T ss_pred CCEEEEEECCCCCC
T ss_conf 71357994344444
No 27
>PRK02126 ribonuclease Z; Provisional
Probab=98.16 E-value=3.6e-06 Score=60.71 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=49.2
Q ss_pred EEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH-----CCCEEEECCCC
Q ss_conf 110576269999889984999869998999999998599643999858984330000011110-----00101200012
Q gi|254780583|r 9 SLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF-----FNCTIFGPLEE 82 (256)
Q Consensus 9 p~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~-----~~~~v~~~~~~ 82 (256)
..|.|+ +-+|.-...++++++|.|+...+. .+.=.+|++|++||.|.||+.|...|.+. -...||||+.-
T Consensus 12 ~~~~Dp-~l~v~~~~~~~~lLfDcGe~~~l~---~~~l~~Id~IFITHlHgDH~~GL~gLLr~~~gr~~~L~IyGP~Gl 86 (334)
T PRK02126 12 GPFDDP-GLYVDFLFERRALLFDLGDLHHLP---PRELLRISHIFVSHTHMDHFIGFDRLLRLCLGRPRRLRLFGPPGF 86 (334)
T ss_pred CCCCCC-EEEEEECCCCCEEEEECCCCCCCC---HHHHCCCCEEEEECCCCCHHCCCHHHHHHHCCCCCCEEEECCCCH
T ss_conf 889998-799971679818999899843006---456465476998267622123579999862799986299998248
No 28
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.07 E-value=6.1e-06 Score=59.22 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=82.6
Q ss_pred CEEEEEEECCCCEEEEECCCCHHHH--HH----HHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCC--CEEEECCCCC--
Q ss_conf 6269999889984999869998999--99----999859964399985898433000001111000--1012000123--
Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPDTYII--SK----MLREKGWFLTHIFNTHHHIDHTRANLNLKKFFN--CTIFGPLEES-- 83 (256)
Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd~~~i--~~----~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~--~~v~~~~~~~-- 83 (256)
+.+++|... +..++|||...... .. .....-..+++|++||.|+||++.........+ +.++.+....
T Consensus 14 ha~~lie~~--~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~ 91 (258)
T COG2220 14 HAAFLIETG--GKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGAGDL 91 (258)
T ss_pred EEEEEEEEC--CEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCHHCCCHHHHHHHCCCCCEEECCCHHHHH
T ss_conf 268999958--868998998678877442256676432478888997368611057076655424887489646034444
Q ss_pred ---CCCCC-CCEEEEEHHCCCCCCCC---CCCCCCCC-CCC--------CCCEEEECCC--CCCCCCCEEE--ECC---C
Q ss_conf ---43233-22033101001111222---33102554-456--------7522686146--5431377043--046---1
Q gi|254780583|r 84 ---SKIPG-IDHGLSDGDTFDFGSHP---IKIIATPG-HTI--------GHICYHFMND--HFLCVGDTLF--SLG---C 140 (256)
Q Consensus 84 ---~~i~~-~~~~l~dgd~i~ig~~~---~~vi~tPG-HT~--------g~i~~~~~~~--~~lFtGDtLF--~~g---~ 140 (256)
..++. .-+.+..|+.+.+++.+ +.+.|.+. |++ .-++|.+..+ .+.|.|||=+ ..+ .
T Consensus 92 ~~~~g~~~~~~~~~~~g~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~~~~~~~~ 171 (258)
T COG2220 92 LIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLFLIIEELD 171 (258)
T ss_pred HHCCCCCCCEEEECCCCCEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCHHHHHHHHHCC
T ss_conf 42158772055614788639735646988862632433358877434676169999609927996256706766554205
Q ss_pred CC-----CCCCC--HHHHHHHHH--HH-HCCCCCCEEECCC
Q ss_conf 34-----46663--156776654--42-0134465020166
Q gi|254780583|r 141 GR-----IFEDS--YAEMFESLE--KI-KSFSDKTHIYFGH 171 (256)
Q Consensus 141 Gr-----~~~G~--~~~l~~Sl~--kl-~~Lp~~t~i~pGH 171 (256)
|+ ++.|. ...|..+.+ ++ ..|... ++.|-|
T Consensus 172 ~~~DvallPig~~~~~~~~~~~~~~~~~~~l~~~-~viP~H 211 (258)
T COG2220 172 GPVDVALLPIGGYPNATMMPPEAAVAAAEVLRPK-RVIPMH 211 (258)
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCC-EEEECC
T ss_conf 7777899455456677657899999999850856-499754
No 29
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.96 E-value=0.00012 Score=50.74 Aligned_cols=70 Identities=24% Similarity=0.224 Sum_probs=46.3
Q ss_pred EEEECCCE-EEEEEECCCCEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHH------C-CCEE
Q ss_conf 01105762-69999889984999869998999999998599---643999858984330000011110------0-0101
Q gi|254780583|r 8 ISLYHDNF-CILIHNHKYRLTAAIDAPDTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKF------F-NCTI 76 (256)
Q Consensus 8 ip~~~DNy-~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~------~-~~~v 76 (256)
+|.-..|- +|+|.. .++..++|.|+.. ...+...++ ++++|++||.|.||+.|+..|... . ...|
T Consensus 13 ~Pt~~r~~~s~ll~~--~~~~~L~DcGeGt--~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~i 88 (292)
T COG1234 13 VPTKDRNVSSILLRL--EGEKFLFDCGEGT--QHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKI 88 (292)
T ss_pred CCCCCCCCCEEEEEE--CCEEEEEECCHHH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 774767766799981--9927999778679--999998038820268899827863423777899996140189998249
Q ss_pred EECCC
Q ss_conf 20001
Q gi|254780583|r 77 FGPLE 81 (256)
Q Consensus 77 ~~~~~ 81 (256)
|+|..
T Consensus 89 ygP~g 93 (292)
T COG1234 89 YGPPG 93 (292)
T ss_pred ECCCC
T ss_conf 88853
No 30
>PRK04286 hypothetical protein; Provisional
Probab=97.93 E-value=0.00019 Score=49.56 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=74.0
Q ss_pred EEEEEECCCCEEEEECCCCH------------------HHHHHHHHHCCCCEEEEEECCCCHHHHCH-HHHH--------
Q ss_conf 69999889984999869998------------------99999999859964399985898433000-0011--------
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDT------------------YIISKMLREKGWFLTHIFNTHHHIDHTRA-NLNL-------- 68 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd~------------------~~i~~~l~~~~~~i~~Il~TH~H~DHigg-~~~l-------- 68 (256)
|-+|.. .+..++||||-+ +.+.+.+.+.--+-+.|++||.|+||..- -..+
T Consensus 17 a~~Vet--~d~~IlIDPgvaLap~RygLpPhp~E~~~l~~~r~kI~~~a~~advvvISHYHyDH~~p~~~~~Y~~~~~~~ 94 (294)
T PRK04286 17 ATFVET--RDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILELAKKADVVTISHYHYDHHTPFYESVYEATSEEE 94 (294)
T ss_pred EEEEEE--CCEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHCCCCCC
T ss_conf 799983--885799777021187667989980999999999999999984299999913366677855343010244423
Q ss_pred -HHHCC-CEEEEC-CCC------CC-------CCC--CCCEEEEEHHCCCCCCCCCCCCC-CCCCCC-CC-----CEEEE
Q ss_conf -11000-101200-012------34-------323--32203310100111122233102-554456-75-----22686
Q gi|254780583|r 69 -KKFFN-CTIFGP-LEE------SS-------KIP--GIDHGLSDGDTFDFGSHPIKIIA-TPGHTI-GH-----ICYHF 123 (256)
Q Consensus 69 -~~~~~-~~v~~~-~~~------~~-------~i~--~~~~~l~dgd~i~ig~~~~~vi~-tPGHT~-g~-----i~~~~ 123 (256)
.+.|. -.+|+- ..+ .. .+. +......||..|.+|+..+++-. .| |-+ |+ |++.+
T Consensus 95 ~~eiY~gK~~~~K~P~~~IN~SQr~Ra~~flk~~~~~~~~i~~aDg~~f~~g~~~i~fS~pvp-HG~~gsklG~Vi~~~I 173 (294)
T PRK04286 95 YKEIYGGKIVLIKDPTENINWSQRRRAYGFLKAVKGIAKKIEYADGKEFRFGGTVIEFSPPVP-HGAEGSKLGYVVMVRI 173 (294)
T ss_pred HHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCEEEEECCCCC-CCCCCCCCCEEEEEEE
T ss_conf 588857858998194264388899999999997652043489758866887888899668877-8988885567999999
Q ss_pred C--CCCCCCCCCE-------------------EEECCC-----CCCCCCCHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 1--4654313770-------------------430461-----3446663156776654420134465020166
Q gi|254780583|r 124 M--NDHFLCVGDT-------------------LFSLGC-----GRIFEDSYAEMFESLEKIKSFSDKTHIYFGH 171 (256)
Q Consensus 124 ~--~~~~lFtGDt-------------------LF~~g~-----Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGH 171 (256)
. +..++|+-|. +|++|- ||+.+.+.+.-.+.|.+|......|+|+-=|
T Consensus 174 ~dg~~~~~~~SDvqG~~~~e~v~~il~~~P~ivii~GPPtYL~gr~~~~~le~~i~Nl~~ii~~~~~~lIlDHH 247 (294)
T PRK04286 174 SDGDESFVFASDVQGPLNDEAVEFILEKKPTVVIIGGPPTYLLYRVSGEDLEKGIENLERIILLRPKTLILDHH 247 (294)
T ss_pred ECCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf 74976899805566768789999998639998996798456522046766999999999999818987998141
No 31
>pfam02112 PDEase_II cAMP phosphodiesterases class-II.
Probab=97.91 E-value=0.00011 Score=51.13 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=70.6
Q ss_pred EECCC-EEEEEEECCCCEEEEECCCC-HHHHHHHHHHC---------------------------CCCEEEEEECCCCHH
Q ss_conf 10576-26999988998499986999-89999999985---------------------------996439998589843
Q gi|254780583|r 10 LYHDN-FCILIHNHKYRLTAAIDAPD-TYIISKMLREK---------------------------GWFLTHIFNTHHHID 60 (256)
Q Consensus 10 ~~~DN-y~YlI~d~~t~~~viIDpgd-~~~i~~~l~~~---------------------------~~~i~~Il~TH~H~D 60 (256)
..++| -+|||.+..++..+.+|+|- ...+.+.+.+. .-.+...++||.|-|
T Consensus 12 p~E~n~ts~Lvr~~~~~~~ialDAGt~l~gI~~~~~~~~~~~~~~~~~p~~~~~~~p~~~a~~i~~~~I~~ylITH~HLD 91 (323)
T pfam02112 12 IDEGNLSSFLIEDEAQETFIKLDAGSVLQGYPCLTVSKYLSPNVTITTPFSNFESGPYIKHTYLLFNRIKNYLITHSHLD 91 (323)
T ss_pred CCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCHH
T ss_conf 78887248996546988689997765588899998641047754235776553457135678999852213993265277
Q ss_pred HHCHHHHHHH-----HCCCEEEECCCCCCCC----------CCC-------------CEEEEEHHCCCCCCCCCCCCCCC
Q ss_conf 3000001111-----0001012000123432----------332-------------20331010011112223310255
Q gi|254780583|r 61 HTRANLNLKK-----FFNCTIFGPLEESSKI----------PGI-------------DHGLSDGDTFDFGSHPIKIIATP 112 (256)
Q Consensus 61 Higg~~~l~~-----~~~~~v~~~~~~~~~i----------~~~-------------~~~l~dgd~i~ig~~~~~vi~tP 112 (256)
|+.|...-.. ..+-+|||-......+ |.+ -..+..|....+....+.+..-|
T Consensus 92 HIaGLvinsp~~~~~~~~K~i~gl~~ti~aLk~hiFN~~iWPNl~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~fp 171 (323)
T pfam02112 92 HVCGLVINSPGFYKQMSKKTIYGLPYTINALQKHLFNNLVWPNLPSFGIVNLIYKVKMFDLSPGEFNKLTETTMSVVPFP 171 (323)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 66454305854334679951886589999998733167426788667887743169988738775102467763156744
Q ss_pred -CCC------CCCCEEEECCC----CCCCCCCE
Q ss_conf -445------67522686146----54313770
Q gi|254780583|r 113 -GHT------IGHICYHFMND----HFLCVGDT 134 (256)
Q Consensus 113 -GHT------~g~i~~~~~~~----~~lFtGDt 134 (256)
.|. -.|-.|++.++ .++|.||+
T Consensus 172 ~sH~~~~~~~~~SsAflird~~t~~~il~fGD~ 204 (323)
T pfam02112 172 VNHGGLIIKEALSTAFLFTDSVSGDSILVFGDV 204 (323)
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCEEEEECCC
T ss_conf 537887677634407999955899789998288
No 32
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.80 E-value=3.4e-05 Score=54.37 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=71.7
Q ss_pred CEEEEECCCC----HHHHHHHH-HHCC-CCEEEEEECCCCHHHHCHHHHHHHHC-----CCEEEECCCCCC---------
Q ss_conf 8499986999----89999999-9859-96439998589843300000111100-----010120001234---------
Q gi|254780583|r 25 RLTAAIDAPD----TYIISKML-REKG-WFLTHIFNTHHHIDHTRANLNLKKFF-----NCTIFGPLEESS--------- 84 (256)
Q Consensus 25 ~~~viIDpgd----~~~i~~~l-~~~~-~~i~~Il~TH~H~DHigg~~~l~~~~-----~~~v~~~~~~~~--------- 84 (256)
...+||||-- +..-++.. ++.+ ..+.+|+-||.|.||-||+.-+.+.- .++|++|+.-..
T Consensus 135 tg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme~avaENvlA 214 (655)
T COG2015 135 TGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFMEEAVAENVLA 214 (655)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 52699815678288999999999765889748999612542013771001578884667413764605789999875441
Q ss_pred --------------------------------------CCCCCCEEEEEHHCCCCCCCCCCCCCCCCC-CCCCCEEEECC
Q ss_conf --------------------------------------323322033101001111222331025544-56752268614
Q gi|254780583|r 85 --------------------------------------KIPGIDHGLSDGDTFDFGSHPIKIIATPGH-TIGHICYHFMN 125 (256)
Q Consensus 85 --------------------------------------~i~~~~~~l~dgd~i~ig~~~~~vi~tPGH-T~g~i~~~~~~ 125 (256)
.|+..-...+.|++..+.+.++++..|||- .|.-|-+|++.
T Consensus 215 GnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tPgtEaPAEM~~y~P~ 294 (655)
T COG2015 215 GNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTPGTEAPAEMHFYFPR 294 (655)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEEECEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 05676666643123358886675040103322468525645567862367258870507899628898883777512267
Q ss_pred CCCCCCC
Q ss_conf 6543137
Q gi|254780583|r 126 DHFLCVG 132 (256)
Q Consensus 126 ~~~lFtG 132 (256)
-++|...
T Consensus 295 ~kaL~mA 301 (655)
T COG2015 295 LKALCMA 301 (655)
T ss_pred HHHHHHH
T ss_conf 8888877
No 33
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=97.66 E-value=5.3e-05 Score=53.15 Aligned_cols=123 Identities=20% Similarity=0.305 Sum_probs=76.3
Q ss_pred CEEEEEECCCCHHHHCHHHH--HHH--HCCCEEEECCCCCCCC-----C-CCCEEEEEHHCCCCCCCCCCCCC-------
Q ss_conf 64399985898433000001--111--0001012000123432-----3-32203310100111122233102-------
Q gi|254780583|r 48 FLTHIFNTHHHIDHTRANLN--LKK--FFNCTIFGPLEESSKI-----P-GIDHGLSDGDTFDFGSHPIKIIA------- 110 (256)
Q Consensus 48 ~i~~Il~TH~H~DHigg~~~--l~~--~~~~~v~~~~~~~~~i-----~-~~~~~l~dgd~i~ig~~~~~vi~------- 110 (256)
.+++++.||.|.||+.-+.+ +.+ ...++.+||....+.. | .....++.||.+++++.++.++.
T Consensus 109 ~lDavl~TH~H~DHiD~n~AAAv~~n~~~~v~FiGP~~~vd~W~~WGVP~eR~ivvkPGD~~kvkDi~i~alesfDRT~l 188 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVMQNCADHVKFIGPQTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTAL 188 (355)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHCCCCHHHEEEECCCCEEEEEEEEEEEECCCCCEEE
T ss_conf 32079985114343008999999826855785318589998888629967887995489878871269998504562479
Q ss_pred -C--------CCCCCC-----CCEEEEC--CCCCCCCCCEEEECC---CCC---C------CCCCH---HHHHHHHH--H
Q ss_conf -5--------544567-----5226861--465431377043046---134---4------66631---56776654--4
Q gi|254780583|r 111 -T--------PGHTIG-----HICYHFM--NDHFLCVGDTLFSLG---CGR---I------FEDSY---AEMFESLE--K 157 (256)
Q Consensus 111 -t--------PGHT~g-----~i~~~~~--~~~~lFtGDtLF~~g---~Gr---~------~~G~~---~~l~~Sl~--k 157 (256)
| +|-++. .|.|+++ ..++.++||+.|+.. .|+ + ++-++ .+-+.|++ |
T Consensus 189 vT~~~~~~~~~g~~~~~Md~~AVnYl~kT~gGnvYH~gDSHySn~fakhG~~~~IDVal~~yGeNP~GitDKmts~DiLR 268 (355)
T PRK11709 189 ITLPADGKAAGGVLPDGMDRRAVNYLFKTPGGNLYHSGDSHYSNYYAKHGNEYQIDVALGSYGENPRGITDKMTSIDILR 268 (355)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 85178754468999721667634148976997677557613556788727610311787325668987616576999999
Q ss_pred H-HCCCCCCEEECCC
Q ss_conf 2-0134465020166
Q gi|254780583|r 158 I-KSFSDKTHIYFGH 171 (256)
Q Consensus 158 l-~~Lp~~t~i~pGH 171 (256)
. ..|.-. +|.|=|
T Consensus 269 maE~L~aK-VvIP~H 282 (355)
T PRK11709 269 MAESLNAK-VVIPVH 282 (355)
T ss_pred HHHHCCCC-EEEECH
T ss_conf 99863985-895130
No 34
>KOG4736 consensus
Probab=97.59 E-value=6.8e-05 Score=52.45 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHHCCCEEEECC-CCCCCCCCCCEEEEEHHC
Q ss_conf 9984999869998999999998599---643999858984330000011110001012000-123432332203310100
Q gi|254780583|r 23 KYRLTAAIDAPDTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPL-EESSKIPGIDHGLSDGDT 98 (256)
Q Consensus 23 ~t~~~viIDpgd~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~-~~~~~i~~~~~~l~dgd~ 98 (256)
++...+++|.|-. .+.+.+. +++.+++||.|.+|+|.+..+... ++..+. +-..+.+. -..++++..
T Consensus 102 d~~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~s---p~l~~s~e~~gr~~~-pt~l~e~~~ 172 (302)
T KOG4736 102 DGGDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQS---PILYHSMEYIGRHVT-PTELDERPY 172 (302)
T ss_pred CCCCEEEEECCCC-----HHHHCCCCHHHCCEEEEECCCCCCCCCCCCCCCC---HHHHHHHHHCCCCCC-HHHHCCCCC
T ss_conf 2883499955872-----2421476753455168732475542653346677---777664560378567-424033774
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCC----CCCCCCCEE
Q ss_conf 1111222331025544567522686146----543137704
Q gi|254780583|r 99 FDFGSHPIKIIATPGHTIGHICYHFMND----HFLCVGDTL 135 (256)
Q Consensus 99 i~ig~~~~~vi~tPGHT~g~i~~~~~~~----~~lFtGDtL 135 (256)
++++ -.+.+..|||||..+++..+.+- .+..+||..
T Consensus 173 ~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf 212 (302)
T KOG4736 173 LKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLF 212 (302)
T ss_pred CCCC-CCEEEEECCCCCCCCEEEEEEEECCCCEEEEEEECC
T ss_conf 0017-754675079998763579998504552489985324
No 35
>KOG1136 consensus
Probab=97.10 E-value=0.00079 Score=45.52 Aligned_cols=134 Identities=15% Similarity=0.245 Sum_probs=82.3
Q ss_pred CCCCEE-EEEEECCC-EEEEEEECCCCEEEEECCC------CHHHH--HHHHHHCCC---CEEEEEECCCCHHHHCHHHH
Q ss_conf 986145-30110576-2699998899849998699------98999--999998599---64399985898433000001
Q gi|254780583|r 1 MTSLNI-AISLYHDN-FCILIHNHKYRLTAAIDAP------DTYII--SKMLREKGW---FLTHIFNTHHHIDHTRANLN 67 (256)
Q Consensus 1 m~~~~i-~ip~~~DN-y~YlI~d~~t~~~viIDpg------d~~~i--~~~l~~~~~---~i~~Il~TH~H~DHigg~~~ 67 (256)
|..++| |+.+-+|- -|-++..- .+..+.+|.| |.... ..++.+.|- -++-|+++|.|-||+|+++.
T Consensus 1 mp~i~v~pLGAGQdvGrSCilvsi-~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPy 79 (501)
T KOG1136 1 MPEIKVTPLGAGQDVGRSCILVSI-GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPY 79 (501)
T ss_pred CCCCEEEECCCCCCCCCEEEEEEE-CCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEECCCCCCCCCC
T ss_conf 985147754677625742799997-7907899545455557656688852366888745404589985321100466400
Q ss_pred HHHH--CCCEEEECCCCCCCCCC---------CC--------------------EEEEEHHCCCC-CCCCCCCCCCCCCC
Q ss_conf 1110--00101200012343233---------22--------------------03310100111-12223310255445
Q gi|254780583|r 68 LKKF--FNCTIFGPLEESSKIPG---------ID--------------------HGLSDGDTFDF-GSHPIKIIATPGHT 115 (256)
Q Consensus 68 l~~~--~~~~v~~~~~~~~~i~~---------~~--------------------~~l~dgd~i~i-g~~~~~vi~tPGHT 115 (256)
+.+. |+-|||.......-.|- ++ ..+.=.+++++ .++.++.+. -||-
T Consensus 80 fsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayY-AGHV 158 (501)
T KOG1136 80 FSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYY-AGHV 158 (501)
T ss_pred HHHHHCCCCCEEEECCHHHHCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHEEEEEEHHEEEECCCCEEEEEE-CCCC
T ss_conf 576617788647855635305388988898761656753320089899987650673302207725541364331-2320
Q ss_pred CCCCEEEEC--CCCCCCCCCEEE
Q ss_conf 675226861--465431377043
Q gi|254780583|r 116 IGHICYHFM--NDHFLCVGDTLF 136 (256)
Q Consensus 116 ~g~i~~~~~--~~~~lFtGDtLF 136 (256)
.|...||+. +..++.|||-=+
T Consensus 159 LGAaMf~ikvGd~svvYTGDYnm 181 (501)
T KOG1136 159 LGAAMFYIKVGDQSVVYTGDYNM 181 (501)
T ss_pred CCEEEEEEEECCEEEEEECCCCC
T ss_conf 00057999845535898467667
No 36
>KOG1135 consensus
Probab=96.82 E-value=0.0029 Score=41.90 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=49.1
Q ss_pred EEEEEEECCCCEEEEECCCCH----HHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH--CCCEEEECC
Q ss_conf 269999889984999869998----999999998599643999858984330000011110--001012000
Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDT----YIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF--FNCTIFGPL 80 (256)
Q Consensus 15 y~YlI~d~~t~~~viIDpgd~----~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~--~~~~v~~~~ 80 (256)
++|++.=+ +.-++||||-. ..+++.++..-.++++||++|--.-|+||+.+.... ++|+||+..
T Consensus 16 ~cyllqiD--~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~ 85 (764)
T KOG1135 16 LCYLLQID--GVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATL 85 (764)
T ss_pred CEEEEEEC--CEEEEEECCCCCHHCCCHHHHHHCCCCCCCEEEECCCCHHHHCCCHHHHHHCCCCCEEEEEC
T ss_conf 45899975--80899727996010660100121146644379955898677365053686377252278843
No 37
>KOG1361 consensus
Probab=96.81 E-value=0.00071 Score=45.82 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=64.3
Q ss_pred EEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCE-EEECCCCCCCCCC---C----CEEEEEHHC
Q ss_conf 9998699989999999985996439998589843300000111100010-1200012343233---2----203310100
Q gi|254780583|r 27 TAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCT-IFGPLEESSKIPG---I----DHGLSDGDT 98 (256)
Q Consensus 27 ~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~-v~~~~~~~~~i~~---~----~~~l~dgd~ 98 (256)
.+.|+||-.=.|-.+--...-...+=++||.|.||..|+. ..+..+ +|++...+..++. + -+.+.=++.
T Consensus 91 ~~~~~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~---~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~ 167 (481)
T KOG1361 91 VIKVLPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLT---KSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQP 167 (481)
T ss_pred CEEECCCCCEEEEHHHCCCCCCCCEEEEECCCCCCCCCCC---CCCCCCCCCCCCCCHHHHHHHCCCCHHHCEEECCCCC
T ss_conf 2460699727874322377665110122014554314354---4455886101412265554401147411413147883
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECC---CCCCCCCCEEE
Q ss_conf 111122233102554456752268614---65431377043
Q gi|254780583|r 99 FDFGSHPIKIIATPGHTIGHICYHFMN---DHFLCVGDTLF 136 (256)
Q Consensus 99 i~ig~~~~~vi~tPGHT~g~i~~~~~~---~~~lFtGDtLF 136 (256)
+.+.+..+.++..- |.||+++|+++. ..+|.|||+=+
T Consensus 168 ~~i~~~~vt~ldAn-HCPGa~mf~F~~~~~~~~lhtGDFR~ 207 (481)
T KOG1361 168 LEIPGIQVTLLDAN-HCPGAVMFLFELSFGPCILHTGDFRA 207 (481)
T ss_pred EEECCEEEEEECCC-CCCCCEEEEEECCCCCEEEECCCCCC
T ss_conf 66245689985166-69985589753478862786477313
No 38
>KOG1137 consensus
Probab=96.40 E-value=0.0019 Score=43.02 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=67.8
Q ss_pred EEEEEECCCCEEEEECCCCHH-----HHHHHHHHCCC-CEEEEEECCCCHHHHCHHHHHHHHCC--CEEEECCCCC----
Q ss_conf 699998899849998699989-----99999998599-64399985898433000001111000--1012000123----
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTY-----IISKMLREKGW-FLTHIFNTHHHIDHTRANLNLKKFFN--CTIFGPLEES---- 83 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~-----~i~~~l~~~~~-~i~~Il~TH~H~DHigg~~~l~~~~~--~~v~~~~~~~---- 83 (256)
|-++.. .+..+..|||-.. .-+.+..+-.+ +++.+++||.|.||++..+.+.++++ -+++.-...+
T Consensus 29 C~ile~--kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~k 106 (668)
T KOG1137 29 CHILEY--KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYK 106 (668)
T ss_pred EEEEEE--CCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCHHHHHH
T ss_conf 799996--683798536667453444446421004601054788766535322666210000022561688244188787
Q ss_pred ------CC---CCCCCEEEEE---------------HHCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCE
Q ss_conf ------43---2332203310---------------1001111222331025544567522686146--54313770
Q gi|254780583|r 84 ------SK---IPGIDHGLSD---------------GDTFDFGSHPIKIIATPGHTIGHICYHFMND--HFLCVGDT 134 (256)
Q Consensus 84 ------~~---i~~~~~~l~d---------------gd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~--~~lFtGDt 134 (256)
.+ +.+-+....+ -+..++.+++|.+++ -||-.|...|.++-+ ++|||||.
T Consensus 107 wllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~ 182 (668)
T KOG1137 107 WLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDY 182 (668)
T ss_pred HHHHCCEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCEEEEEEC-CCHHHHHEEEEEEECEEEEEECCCC
T ss_conf 664233676513575334351047776553222220023334874899604-5412332136665240799962566
No 39
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=96.18 E-value=0.0098 Score=38.44 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=56.8
Q ss_pred CCEEEEECCCCH---------------HH---HHHHHHHCCCCEEEEEECCCCHHHHCH---------HHHHHHHCCCEE
Q ss_conf 984999869998---------------99---999999859964399985898433000---------001111000101
Q gi|254780583|r 24 YRLTAAIDAPDT---------------YI---ISKMLREKGWFLTHIFNTHHHIDHTRA---------NLNLKKFFNCTI 76 (256)
Q Consensus 24 t~~~viIDpgd~---------------~~---i~~~l~~~~~~i~~Il~TH~H~DHigg---------~~~l~~~~~~~v 76 (256)
..-.++||||-+ +. +.+.+++.-.+-+-|.+||.|+||-.- ...-++.|.-++
T Consensus 23 ~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~eiY~gK~ 102 (304)
T COG2248 23 KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKEIYKGKL 102 (304)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHCCCE
T ss_conf 77369977865448534689988799999999999999998648889986401245786655212310324677735837
Q ss_pred EE--CCCCC-C------------CC--CCCCEEEEEHHCCCCCCCCCCCCCCCCCCCC-C-CE----EEECC--CCCCCC
Q ss_conf 20--00123-4------------32--3322033101001111222331025544567-5-22----68614--654313
Q gi|254780583|r 77 FG--PLEES-S------------KI--PGIDHGLSDGDTFDFGSHPIKIIATPGHTIG-H-IC----YHFMN--DHFLCV 131 (256)
Q Consensus 77 ~~--~~~~~-~------------~i--~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g-~-i~----~~~~~--~~~lFt 131 (256)
.- +..+. . .+ -+......||.+|.+|+..+++=.-=-|-++ + +. +.+.+ ..++|+
T Consensus 103 lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~fa 182 (304)
T COG2248 103 LLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFA 182 (304)
T ss_pred EEECCCHHHHCHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCEEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEEC
T ss_conf 88519556557787878999998764311146833786587577899956888888766622149999994397689971
Q ss_pred CCE
Q ss_conf 770
Q gi|254780583|r 132 GDT 134 (256)
Q Consensus 132 GDt 134 (256)
-|+
T Consensus 183 SDv 185 (304)
T COG2248 183 SDV 185 (304)
T ss_pred CCC
T ss_conf 366
No 40
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPro: IPR013470 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Proteins in this entry, by contrast are ribonuclease Z enzymes with unusual activity. Organisms containing these proteins include the CCA sequence in the tRNA precursor and ribonuclease Z cleaves the molecule immediately after this sequence producing a mature 3' end. The sequence of these proteins differs considerably from the majority of ribonuclease Z sequences..
Probab=94.45 E-value=0.015 Score=37.20 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=58.7
Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHC---------CCEEEECCCCC---
Q ss_conf 699998899849998699989999999985996439998589843300000111100---------01012000123---
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF---------NCTIFGPLEES--- 83 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~---------~~~v~~~~~~~--- 83 (256)
.|+.+.++ -++.|+|+. +...|...-...++|++||+|-||+.|+-.+...- +..|+-|....
T Consensus 12 tWiyysPe---rilfdaGeG--vsttlGskvyafkyvflthGhvdhiaGlWGvvnirnnGmGdrekPldvfyP~Gnrave 86 (277)
T TIGR02650 12 TWIYYSPE---RILFDAGEG--VSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPKGNRAVE 86 (277)
T ss_pred HHHEECCC---EEEEECCCC--CCHHHCCEEEEEEEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCEEECCCCCHHHH
T ss_conf 23103543---125435785--0011111012234554323621221000236775217888645752223588650488
Q ss_pred ------------CCCCCCCEEEEEHHCCCC---CCCC--CCCCCCCCCCCCCCEE
Q ss_conf ------------432332203310100111---1222--3310255445675226
Q gi|254780583|r 84 ------------SKIPGIDHGLSDGDTFDF---GSHP--IKIIATPGHTIGHICY 121 (256)
Q Consensus 84 ------------~~i~~~~~~l~dgd~i~i---g~~~--~~vi~tPGHT~g~i~~ 121 (256)
-+...--+++++|+.+-+ |+++ ++-+.|- |-...++|
T Consensus 87 eyt~fik~anP~lrfsfnvhPl~eG~rvflr~aGGfkryvqPfrtk-hv~~evsf 140 (277)
T TIGR02650 87 EYTEFIKKANPELRFSFNVHPLKEGERVFLRDAGGFKRYVQPFRTK-HVASEVSF 140 (277)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCE-EEEEEEEC
T ss_conf 8899986338663366531313468778984478720012530000-01000001
No 41
>TIGR02649 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Proteins in this entry include ribonuclease BN of Escherichia coli (strain K-12) and closely related proteins believed to be equivalent in function. E. coli appears to lack RNase Z, and this ribonuclease appears to be orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=93.57 E-value=0.21 Score=29.90 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=92.2
Q ss_pred EEEEECCCEEEEEE---ECCCCEEEEECCCCHH--HHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHH-HH------CCC
Q ss_conf 30110576269999---8899849998699989--999999985996439998589843300000111-10------001
Q gi|254780583|r 7 AISLYHDNFCILIH---NHKYRLTAAIDAPDTY--IISKMLREKGWFLTHIFNTHHHIDHTRANLNLK-KF------FNC 74 (256)
Q Consensus 7 ~ip~~~DNy~YlI~---d~~t~~~viIDpgd~~--~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~-~~------~~~ 74 (256)
.||..+-|..-++. -+.....++.|.|+.. .+++..=. .-+++.|++.|-|.||..|.+.|. .+ ...
T Consensus 10 GvPtr~rnvtaill~lqhPtq~G~WlfdCGeGtqhq~l~taf~-PGkl~~ifishlhGdhlfGlPGllCsrsm~G~~~Pl 88 (304)
T TIGR02649 10 GVPTRSRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLNTAFN-PGKLEKIFISHLHGDHLFGLPGLLCSRSMAGIIQPL 88 (304)
T ss_pred CCCCCCHHHHHHEEECCCCCCCCEEEEECCCCHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCE
T ss_conf 8875510120000100487767406887687526788874148-875003575422365001553134433313777640
Q ss_pred EEEECCCCCCCC------CC-------CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCEEEECC
Q ss_conf 012000123432------33-------22033101001111222331025544567522686146--5431377043046
Q gi|254780583|r 75 TIFGPLEESSKI------PG-------IDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND--HFLCVGDTLFSLG 139 (256)
Q Consensus 75 ~v~~~~~~~~~i------~~-------~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~--~~lFtGDtLF~~g 139 (256)
.||||..-.+.+ .+ --..+..|+.++-|-.++..+..- |-..+..|.+.+. +-..-.-.|=.+|
T Consensus 89 t~yGPqG~ref~~t~lr~sGsWtd~Pl~i~ei~aG~ilddGlrkvta~~le-hPleCyGyr~~ehdkPGalna~alkaaG 167 (304)
T TIGR02649 89 TVYGPQGVREFVETALRLSGSWTDYPLEIVEISAGEILDDGLRKVTAYRLE-HPLECYGYRVVEHDKPGALNARALKAAG 167 (304)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHCCHHEEEECCC-CCCEECCEEEEECCCCCCHHHHHHHHCC
T ss_conf 675662168898766421111013651578622541122000100120146-8610011067751787502247776458
Q ss_pred CCCCCCCCHHHHHHHHH--HHHCCCCCCEEECCCCCHH
Q ss_conf 13446663156776654--4201344650201665204
Q gi|254780583|r 140 CGRIFEDSYAEMFESLE--KIKSFSDKTHIYFGHEYTE 175 (256)
Q Consensus 140 ~Gr~~~G~~~~l~~Sl~--kl~~Lp~~t~i~pGHeYt~ 175 (256)
+ .+.-+++.|+ |-.+|.|--.| -|-||..
T Consensus 168 v------~PGPlfq~lkaGkt~tl~dGrqi-nGadyla 198 (304)
T TIGR02649 168 V------TPGPLFQELKAGKTVTLEDGRQI-NGADYLA 198 (304)
T ss_pred C------CCCHHHHHHHCCCEEEECCCCEE-CCCHHHC
T ss_conf 9------98514676534865772267420-3301101
No 42
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2; InterPro: IPR004797 This is the DNA internalisation-related competence protein ComEC/Rec2 family. Apparent orthologs are found in 5 species so far (Haemophilus influenzae, Escherichia coli, Bacillus subtilis, Neisseria gonorrhoeae, Streptococcus pneumoniae), of which all but E. coli are model systems for the study of competence for natural transformation. This protein is a predicted multiple membrane-spanning protein likely to be involved in DNA internalisation.; GO: 0030420 establishment of competence for transformation, 0016021 integral to membrane.
Probab=89.00 E-value=0.37 Score=28.25 Aligned_cols=99 Identities=18% Similarity=0.324 Sum_probs=61.2
Q ss_pred HHHHHHHHHCCCC-EEEEEECCCCHHHHCHHHHHHHHCC-CEEEECCCCC------CCC-----CC-CCEEEEEHHCCCC
Q ss_conf 9999999985996-4399985898433000001111000-1012000123------432-----33-2203310100111
Q gi|254780583|r 36 YIISKMLREKGWF-LTHIFNTHHHIDHTRANLNLKKFFN-CTIFGPLEES------SKI-----PG-IDHGLSDGDTFDF 101 (256)
Q Consensus 36 ~~i~~~l~~~~~~-i~~Il~TH~H~DHigg~~~l~~~~~-~~v~~~~~~~------~~i-----~~-~~~~l~dgd~i~i 101 (256)
..++.++...++. ++.++++|.|.||.||...+.+.+. ..+..+.... .-+ .. .......|+.+.+
T Consensus 532 ~~~~p~l~~~~~~~~~~~~l~~~~~d~~g~~~~~l~~~~~~~~~~p~~~~~~p~d~~~~~~~~~~~~~~~~~~~g~~~~~ 611 (731)
T TIGR00361 532 LLLLPWLTWEGLKQLEGLILSHDDLDHAGGADTLLKHWPVLWLVTPKGFNSEPKDEKVLQAARLGGEYHEPCKRGDDWQW 611 (731)
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCEEE
T ss_conf 45543454302101234420023211124056777642001032154445664035677665404401112213541011
Q ss_pred CCCCCCCCCC----CCCCCCCCEE-EECC--CCCCCCCCE
Q ss_conf 1222331025----5445675226-8614--654313770
Q gi|254780583|r 102 GSHPIKIIAT----PGHTIGHICY-HFMN--DHFLCVGDT 134 (256)
Q Consensus 102 g~~~~~vi~t----PGHT~g~i~~-~~~~--~~~lFtGDt 134 (256)
.+..+.++.- |.-...|-|. ++.+ ..++.+||.
T Consensus 612 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~l~gd~ 651 (731)
T TIGR00361 612 QGLRFHVLSPLAPDPDSGNNHSCVLWVDDGGNSWLLTGDL 651 (731)
T ss_pred CCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCC
T ss_conf 1411354155456666677631689971687137872253
No 43
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=83.25 E-value=2.4 Score=22.95 Aligned_cols=75 Identities=20% Similarity=0.140 Sum_probs=48.7
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 31377043046134466631567766544201344650201665204588987750234478999999999888578986
Q gi|254780583|r 129 LCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYT 208 (256)
Q Consensus 129 lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~t 208 (256)
|.+|=.+-.+|+|.-.-|+++|.-+.|.....+.-|+.++.|-+|-..-..|+..|.|-= .+.-..|.++-|+
T Consensus 288 LW~g~~l~~gG~gtaLVGspeqVAd~i~~y~~~Gvd~fiLsg~p~leEa~~fge~VlPll-------r~~~~~r~~~~~~ 360 (377)
T PRK00719 288 LWAGVGLVRGGAGTALVGDPPTVAARIREYADLGIDTFILSGYPHLEEAYRFAELVFPLL-------DVAIPEKPQGPPT 360 (377)
T ss_pred HHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCC-------HHHHHCCCCCCCC
T ss_conf 100332246888640758989999999999974997899738998799999997644573-------5465346678888
Q ss_pred CC
Q ss_conf 67
Q gi|254780583|r 209 NP 210 (256)
Q Consensus 209 vP 210 (256)
-|
T Consensus 361 ~~ 362 (377)
T PRK00719 361 GP 362 (377)
T ss_pred CC
T ss_conf 98
No 44
>KOG2121 consensus
Probab=82.98 E-value=0.3 Score=28.87 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=37.4
Q ss_pred EEEECCCE-EEEEEECCCCEEEEECCCCHH--HH-HHHH----HHCCCCEEEEEECCCCHHHHCHHHHHHHH
Q ss_conf 01105762-699998899849998699989--99-9999----98599643999858984330000011110
Q gi|254780583|r 8 ISLYHDNF-CILIHNHKYRLTAAIDAPDTY--II-SKML----REKGWFLTHIFNTHHHIDHTRANLNLKKF 71 (256)
Q Consensus 8 ip~~~DNy-~YlI~d~~t~~~viIDpgd~~--~i-~~~l----~~~~~~i~~Il~TH~H~DHigg~~~l~~~ 71 (256)
+|--.-|- +|+|.-.. ..-++.|.|+.. .+ ..|- +..-.++.+|+++|.|.||.-|+..+.+.
T Consensus 454 iPskyRNVSS~lv~i~~-~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~ 524 (746)
T KOG2121 454 IPSKYRNVSSILVRIDS-DDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQA 524 (746)
T ss_pred CCCCCCCEEEEEEECCC-CCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 77765313799970267-753786448844878889861301678987589999986200001147899999
No 45
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=79.63 E-value=1.8 Score=23.72 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=42.3
Q ss_pred CEEEEEECCCCHHHHCHHH----HHHHHCCCEEEECCCCCCC----------CCCCC---------EEEEEHHCCCCCCC
Q ss_conf 6439998589843300000----1111000101200012343----------23322---------03310100111122
Q gi|254780583|r 48 FLTHIFNTHHHIDHTRANL----NLKKFFNCTIFGPLEESSK----------IPGID---------HGLSDGDTFDFGSH 104 (256)
Q Consensus 48 ~i~~Il~TH~H~DHigg~~----~l~~~~~~~v~~~~~~~~~----------i~~~~---------~~l~dgd~i~ig~~ 104 (256)
.|+.-++||.|-||+.|+- .+.+.-.-.|||-...-+- .|.++ +.|+..+...++-.
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~t 191 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTLT 191 (356)
T ss_pred HHHHEEECCCCCCCHHCEEECCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECHHHEEEEEEE
T ss_conf 12223752302000001363486434557733772402799999875100015774414585488898473471055334
Q ss_pred CCCCCCCCC---CCCCC----CEEEECCCC----CCCCCCE
Q ss_conf 233102554---45675----226861465----4313770
Q gi|254780583|r 105 PIKIIATPG---HTIGH----ICYHFMNDH----FLCVGDT 134 (256)
Q Consensus 105 ~~~vi~tPG---HT~g~----i~~~~~~~~----~lFtGDt 134 (256)
.+.++.-|= -..|+ -.|++.+.+ ++.+||+
T Consensus 192 ~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDv 232 (356)
T COG5212 192 RLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDV 232 (356)
T ss_pred EECCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCC
T ss_conf 40222564137866688442148998537876248994687
No 46
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=76.06 E-value=3 Score=22.34 Aligned_cols=27 Identities=4% Similarity=0.094 Sum_probs=13.7
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCEEEECC
Q ss_conf 1111222--33102554456752268614
Q gi|254780583|r 99 FDFGSHP--IKIIATPGHTIGHICYHFMN 125 (256)
Q Consensus 99 i~ig~~~--~~vi~tPGHT~g~i~~~~~~ 125 (256)
|.+...+ .+.+..++|..+-=++++++
T Consensus 99 Ik~dq~R~l~~~~~~~~~~~~~rVviI~~ 127 (216)
T TIGR00678 99 IKVDQVRELVEFLSLTPQESGRRVVIIED 127 (216)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 87278999999986064214751799767
No 47
>KOG3798 consensus
Probab=70.88 E-value=4.3 Score=21.32 Aligned_cols=70 Identities=26% Similarity=0.212 Sum_probs=36.7
Q ss_pred CCEEEEEECCCCHHHHCHHHHHHHHC--CCEEEECCCCCCCCC---C--CCEEEEEHHCCCC--CCCCCCCCCCCC-CCC
Q ss_conf 96439998589843300000111100--010120001234323---3--2203310100111--122233102554-456
Q gi|254780583|r 47 WFLTHIFNTHHHIDHTRANLNLKKFF--NCTIFGPLEESSKIP---G--IDHGLSDGDTFDF--GSHPIKIIATPG-HTI 116 (256)
Q Consensus 47 ~~i~~Il~TH~H~DHigg~~~l~~~~--~~~v~~~~~~~~~i~---~--~~~~l~dgd~i~i--g~~~~~vi~tPG-HT~ 116 (256)
.+++.++..|.|+||...-. ++... +++++-........+ + ....+.+++..++ ++..+.+..||. |.-
T Consensus 131 p~~d~~~vsh~h~dhld~~~-~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~ 209 (343)
T KOG3798 131 PDLDFAVVSHDHYDHLDADA-VKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWG 209 (343)
T ss_pred CCCCEECCCCCCCCCCCHHH-HHHHHCCCCCCEECHHHHHHEECCCCCCCEEEEECCHHHCEECCCCEEEEEECCHHHHC
T ss_conf 99663034366523236688-87650568521030322201243788770367501002205118957999975324312
Q ss_pred C
Q ss_conf 7
Q gi|254780583|r 117 G 117 (256)
Q Consensus 117 g 117 (256)
+
T Consensus 210 ~ 210 (343)
T KOG3798 210 Q 210 (343)
T ss_pred C
T ss_conf 4
No 48
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=68.50 E-value=9.5 Score=19.10 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCEE
Q ss_conf 2331025544567522686146543137704
Q gi|254780583|r 105 PIKIIATPGHTIGHICYHFMNDHFLCVGDTL 135 (256)
Q Consensus 105 ~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtL 135 (256)
..++...=|--.|.-|+.+.+ ++=||-|+
T Consensus 202 ~v~~~~~~gdV~gk~~iiVDD--iIdTgGTi 230 (314)
T COG0462 202 VVEVMNLIGDVEGKDVVIVDD--IIDTGGTI 230 (314)
T ss_pred EEEEECCCCCCCCCEEEEEEC--CCCCCHHH
T ss_conf 479703433677987999936--51365689
No 49
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842 This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebsiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in Escherichia coli. Based on this latter finding, it is suggested that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme .; GO: 0006810 transport, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=68.32 E-value=3.7 Score=21.72 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=40.4
Q ss_pred CCCCEEEEECCC-CHH-HHHHHHH---HCC-C---CEEEEEECCCCHHHHCHHHHHHHH-CCCEEEECCCC
Q ss_conf 899849998699-989-9999999---859-9---643999858984330000011110-00101200012
Q gi|254780583|r 22 HKYRLTAAIDAP-DTY-IISKMLR---EKG-W---FLTHIFNTHHHIDHTRANLNLKKF-FNCTIFGPLEE 82 (256)
Q Consensus 22 ~~t~~~viIDpg-d~~-~i~~~l~---~~~-~---~i~~Il~TH~H~DHigg~~~l~~~-~~~~v~~~~~~ 82 (256)
++...-+++-+. |.. .+.++-. +.+ + -|..|++|-+--|||.|+-.|+|- -.-.||++..-
T Consensus 45 ~DG~rW~L~NASPDiRQQi~a~paL~P~~~aLR~TpI~~V~Lt~g~iDH~tGLL~LREgq~pf~~yat~~V 115 (314)
T TIGR02108 45 ADGERWVLLNASPDIRQQIQAFPALHPQRGALRDTPIEGVVLTDGEIDHVTGLLSLREGQQPFTLYATEMV 115 (314)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCHH
T ss_conf 78873586707964888886203215777888657604788206622456412333037885148627157
No 50
>pfam08747 DUF1788 Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.
Probab=68.02 E-value=2.4 Score=22.97 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 77043046134466-6315677665442013446502016652045889877502344
Q gi|254780583|r 132 GDTLFSLGCGRIFE-DSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHN 188 (256)
Q Consensus 132 GDtLF~~g~Gr~~~-G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n 188 (256)
.|.+|..|+|.++. =-.-.+.+.|+....--+-.+-|||+ |+-..|+|=-.+..+|
T Consensus 61 ~dvvfltGvG~vyP~iR~h~lLn~L~~~~~~~P~v~FyPG~-y~g~~L~lFg~l~d~~ 117 (125)
T pfam08747 61 FDIVFLTGVGEVYPLIRSHNLLNNLHSVMGDVPLVMFYPGE-YDGQSLRLFGRLKDDN 117 (125)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC-CCCCEEEECCCCCCCC
T ss_conf 74899937742150686899999888875488189975874-2686555335668877
No 51
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=67.96 E-value=8.5 Score=19.41 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 02554456752268614654313770430461344666315677665442-0134465020166520458898775
Q gi|254780583|r 109 IATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGHEYTENNAYFALS 183 (256)
Q Consensus 109 i~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl-~~Lp~~t~i~pGHeYt~~nl~Fa~~ 183 (256)
..-+||-||++.+-+.. ++..| |++. +++++.+-+..+ ......+++||+--.+.+.+.|++.
T Consensus 36 ~~r~GhIpgAinip~~~---~~~~~-------~~~~--~~~~l~~~~~~~gi~~~~~iV~yC~sG~rA~~~~~~l~ 99 (118)
T cd01449 36 GLRSGHIPGAVNIPWTS---LLDED-------GTFK--SPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALE 99 (118)
T ss_pred CCCCCCCCCCEECCCCC---CCCCC-------CCCC--CHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 77188989953547425---31357-------7658--99999999876089988867774799889999999999
No 52
>KOG1249 consensus
Probab=65.00 E-value=3.7 Score=21.78 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCCCCCCCCCC-CCCEEEECCCC--------------CCCC-CCEEEECCCCCC--CCCCHH
Q ss_conf 33102554456-75226861465--------------4313-770430461344--666315
Q gi|254780583|r 106 IKIIATPGHTI-GHICYHFMNDH--------------FLCV-GDTLFSLGCGRI--FEDSYA 149 (256)
Q Consensus 106 ~~vi~tPGHT~-g~i~~~~~~~~--------------~lFt-GDtLF~~g~Gr~--~~G~~~ 149 (256)
-.++.|||-.. ..++-++..+. +... |-+||.||.+|+ .+++.+
T Consensus 363 ~w~YDTPG~~~~~q~~~llt~eEl~~v~p~~~lrprtf~vkpG~sl~iGGl~RLDilqa~~~ 424 (572)
T KOG1249 363 AWLYDTPGVLNPNQILSLLTSEELLNVTPRRVLRPRTFRVKPGYSLFIGGLVRLDILQASVE 424 (572)
T ss_pred CEEECCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCEEECCCCCEEEEEEEEEEEHHHCCCC
T ss_conf 25515887567546543416877631473110166127737884799710578653340556
No 53
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=64.02 E-value=2.7 Score=22.62 Aligned_cols=99 Identities=25% Similarity=0.337 Sum_probs=59.4
Q ss_pred CCCEEEECCC--CC-CCCCCHHHHHHHHHH-----HHCC----CCCCEEECCCCCH-HHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 3770430461--34-466631567766544-----2013----4465020166520-45889877502344789999999
Q gi|254780583|r 131 VGDTLFSLGC--GR-IFEDSYAEMFESLEK-----IKSF----SDKTHIYFGHEYT-ENNAYFALSCDPHNLELQKYCSK 197 (256)
Q Consensus 131 tGDtLF~~g~--Gr-~~~G~~~~l~~Sl~k-----l~~L----p~~t~i~pGHeYt-~~nl~Fa~~~~p~n~~~~~~~~~ 197 (256)
+=||+|+.|+ =| -+=....+|++.|.+ |-+| |.+|.++|+-.|. ..|.-|. |.-.++++++..
T Consensus 190 AFD~vFs~GVLYHRkSPLe~L~~L~~~L~~~GELVL~TLviD~d~~~~LvP~~~YAkMkNVYFI----PSv~aL~~Wl~k 265 (316)
T TIGR00452 190 AFDTVFSLGVLYHRKSPLEHLKQLKDQLVKKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFI----PSVSALKNWLEK 265 (316)
T ss_pred CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEECCCCCCCCEEEEEEH----HHHHHHHHHHHH
T ss_conf 1203122020211557089999999998757935865346607767586475444220001420----238999888874
Q ss_pred HHHHHHCCCC--CC-CCCHHHHHHHCCCCCCCCHHHHHHCCCCCC
Q ss_conf 9988857898--66-787899987282246789899997388998
Q gi|254780583|r 198 VKSMRSQNLY--TN-PSTISLEKKVNPFLRIENTSLRKNLNMENA 239 (256)
Q Consensus 198 ~~~~~~~~~~--tv-Pstl~~Ek~~NPflr~~~~~~~~~~~~~~~ 239 (256)
|. =.+.- .| -||..|.|+|.=.+. +.+...++..++
T Consensus 266 vG---F~~~~i~~V~~TT~~EQRkTd~~~~---~SL~DFLD~~D~ 304 (316)
T TIGR00452 266 VG---FENVRILDVLKTTLEEQRKTDWLLG---ESLEDFLDPTDP 304 (316)
T ss_pred CC---CCEEEEEEEECCCHHHHHHHHHHHH---CCHHHHCCCCCC
T ss_conf 49---5314787510037224244567752---006662488879
No 54
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203 This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=61.79 E-value=4.2 Score=21.41 Aligned_cols=42 Identities=14% Similarity=0.401 Sum_probs=30.2
Q ss_pred EEEEEECCCEEE---EEEECCCCEEEEECCCCH-------HHHHHHHHHCCCC
Q ss_conf 530110576269---999889984999869998-------9999999985996
Q gi|254780583|r 6 IAISLYHDNFCI---LIHNHKYRLTAAIDAPDT-------YIISKMLREKGWF 48 (256)
Q Consensus 6 i~ip~~~DNy~Y---lI~d~~t~~~viIDpgd~-------~~i~~~l~~~~~~ 48 (256)
++|.||+|| += ++..+..+.++|||=|=+ ..+-+...+++|+
T Consensus 38 vTvkcFEDN-slvr~~L~qpG~GrVLVVDGgGSlr~ALlGd~lA~~A~~NGWe 89 (155)
T TIGR01935 38 VTVKCFEDN-SLVREVLEQPGAGRVLVVDGGGSLRRALLGDNLAELAEENGWE 89 (155)
T ss_pred EEEEEEECC-HHHHHHHHCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHCCCC
T ss_conf 389997047-3688998259997279995885010210167567886505951
No 55
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=61.45 E-value=13 Score=18.31 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=8.2
Q ss_pred CCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 46502016652045889877502
Q gi|254780583|r 163 DKTHIYFGHEYTENNAYFALSCD 185 (256)
Q Consensus 163 ~~t~i~pGHeYt~~nl~Fa~~~~ 185 (256)
.++.| -| ...|+.|-+.+.
T Consensus 408 ~e~~I-~G---v~Tni~~l~~il 426 (478)
T PRK08463 408 KEFTI-EG---VRTTIPFLIAIS 426 (478)
T ss_pred HCCEE-EC---CCCCHHHHHHHH
T ss_conf 26699-89---558599999986
No 56
>TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process.
Probab=59.63 E-value=2.6 Score=22.76 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECC------CC-CCCCCCEEEECCCCCCCCCCHHH-----HHHHHHHHHCCCCCC-E
Q ss_conf 11122233102554456752268614------65-43137704304613446663156-----776654420134465-0
Q gi|254780583|r 100 DFGSHPIKIIATPGHTIGHICYHFMN------DH-FLCVGDTLFSLGCGRIFEDSYAE-----MFESLEKIKSFSDKT-H 166 (256)
Q Consensus 100 ~ig~~~~~vi~tPGHT~g~i~~~~~~------~~-~lFtGDtLF~~g~Gr~~~G~~~~-----l~~Sl~kl~~Lp~~t-~ 166 (256)
++|+..+.+.=.- ..|||.|=-|. .+ .=.|-||+-+.+ |+|+||..+ |-=.++.|+.+-.+. +
T Consensus 127 s~G~i~lf~gGiG--~dGHIaFNEPgSsl~sRTri~tL~~~T~~ANs--RFF~gdv~~VPk~ALt~Gi~Tildfs~~vll 202 (260)
T TIGR00502 127 SYGGIDLFLGGIG--ADGHIAFNEPGSSLESRTRIKTLTEDTIIANS--RFFEGDVNQVPKYALTVGIGTILDFSKEVLL 202 (260)
T ss_pred HHCCEEEEEEEEC--CCCCEEECCCCCCCCCCCEEEECCHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 5188178973024--88863216888873558524623622245533--2048180402622433416889988866642
Q ss_pred EECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 201665204588987750234478999999999888578986678789998728224678
Q gi|254780583|r 167 IYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIE 226 (256)
Q Consensus 167 i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~ 226 (256)
+-.|| ++..-++++.+.+.-+..+-=...+--+--+=||
T Consensus 203 L~~G~---------------------~KA~A~~~~~EG~v~~~~t~SaLqlH~~~~~v~D 241 (260)
T TIGR00502 203 LVSGH---------------------QKAEAVQKAVEGNVNHDWTISALQLHKHVIVVCD 241 (260)
T ss_pred HCCCH---------------------HHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEC
T ss_conf 10364---------------------7899999983578675224518524884289824
No 57
>PRK04554 consensus
Probab=57.09 E-value=16 Score=17.61 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=14.3
Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 530110576269999889--984999869
Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
+.+..|.|.=+|+-..+. +..+++|-+
T Consensus 33 ~~~~~F~DGE~~v~i~esVrg~dV~iiqs 61 (327)
T PRK04554 33 ASVSKFSDGEVAVELLENVRGRDVFILQP 61 (327)
T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEEEC
T ss_conf 28898899988874178778981899917
No 58
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970 Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism. Structural studies of the E. coli and Synechocystis enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=56.84 E-value=6.9 Score=20.01 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH--CCCEEEECCCCC------CCCCCC--------CEEEEEH----
Q ss_conf 99999998599643999858984330000011110--001012000123------432332--------2033101----
Q gi|254780583|r 37 IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF--FNCTIFGPLEES------SKIPGI--------DHGLSDG---- 96 (256)
Q Consensus 37 ~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~--~~~~v~~~~~~~------~~i~~~--------~~~l~dg---- 96 (256)
+.....++.|.+|++|=++= |=+=....|.+. .++|+.+-..-+ ..+..+ -..+-||
T Consensus 129 PWQ~l~~r~GA~lk~~~l~~---~G~ld~~~l~~~~~~~TKlVa~~HvSNVlGtvnP~~ei~~~AH~~GA~vlvDGAQ~~ 205 (409)
T TIGR01979 129 PWQLLAERTGATLKFIPLDD---DGTLDLDDLEELLTEKTKLVAITHVSNVLGTVNPVEEIIKLAHQVGAKVLVDGAQAV 205 (409)
T ss_pred HHHHHHHHHCCEEEEEECCC---CCEEEHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 79999976098789974488---760518889988326982999974202203014878999998657976998625575
Q ss_pred --HCCCCCCCCCCCCCCCCCC---CCCCEEEECC-------CCCCCCCCEE
Q ss_conf --0011112223310255445---6752268614-------6543137704
Q gi|254780583|r 97 --DTFDFGSHPIKIIATPGHT---IGHICYHFMN-------DHFLCVGDTL 135 (256)
Q Consensus 97 --d~i~ig~~~~~vi~tPGHT---~g~i~~~~~~-------~~~lFtGDtL 135 (256)
..+++-.+...++---||= |-.|.++... +++++=||-+
T Consensus 206 pH~pvDv~~ldcDFyvFSGHKmyGPtGiGVLYGK~~lLe~MPPf~gGG~MI 256 (409)
T TIGR01979 206 PHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEEMPPFLGGGEMI 256 (409)
T ss_pred CCCCCCHHHHCCCEEEEECCHHHCCCCCEEEHHHHHHHHHCCCCCCCCCEE
T ss_conf 898988565578744561004525766301127889886477846698615
No 59
>PRK12999 pyruvate carboxylase; Reviewed
Probab=55.73 E-value=17 Score=17.55 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.0
Q ss_pred EEEEEECCCE
Q ss_conf 5301105762
Q gi|254780583|r 6 IAISLYHDNF 15 (256)
Q Consensus 6 i~ip~~~DNy 15 (256)
|-|-++.|.|
T Consensus 213 iEvQilgD~~ 222 (1147)
T PRK12999 213 IEVQILGDKH 222 (1147)
T ss_pred EEEEEEECCC
T ss_conf 7999996288
No 60
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.76 E-value=18 Score=17.32 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=14.5
Q ss_pred EEEEEECCCEEEEEEEC--CCCEEEEECC
Q ss_conf 53011057626999988--9984999869
Q gi|254780583|r 6 IAISLYHDNFCILIHNH--KYRLTAAIDA 32 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~--~t~~~viIDp 32 (256)
+.+..|.|.=.|+-..+ .+..+++|-+
T Consensus 36 ~~~~~FpDGE~~v~i~e~Vrg~dV~iiqs 64 (323)
T PRK02458 36 LSSRQFSDGEIMINIEESVRGDDIYIIQS 64 (323)
T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEECC
T ss_conf 18898899988986478778983899868
No 61
>PRK08126 hypothetical protein; Provisional
Probab=54.48 E-value=12 Score=18.40 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=41.3
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 4313770430461344666315677665-442013446502016652045889877502344789999999
Q gi|254780583|r 128 FLCVGDTLFSLGCGRIFEDSYAEMFESL-EKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSK 197 (256)
Q Consensus 128 ~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl-~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~ 197 (256)
+.|.||.+|..|--.+- -.+..+.+.+ +.|...|....| -|| -.|.-+..+-.|+|..+-...+.
T Consensus 315 V~l~~~~lF~sGsA~l~-p~~~pll~rIa~~l~~~~G~I~V-~GH---TDn~Pi~s~~f~SNw~LS~aRA~ 380 (428)
T PRK08126 315 VTFRGDAMFAPGGATVN-PAMGPLINKIAREIARVPGKVTV-TGH---TDNQPIRSAQFASNLVLSEERAT 380 (428)
T ss_pred EEECCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCEEEE-EEE---CCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99768888787761106-44799999999998379981899-885---89988878887974999999999
No 62
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.03 E-value=18 Score=17.24 Aligned_cols=27 Identities=4% Similarity=-0.024 Sum_probs=15.3
Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 530110576269999889--984999869
Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
+.+..|.|.=.|+-..+. ++.+++|-+
T Consensus 32 ~~~~~F~DGE~~v~i~e~vrg~dV~ivqs 60 (321)
T PRK02269 32 STVRQFSDGEIQVNIEESIRGHHVFILQS 60 (321)
T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEECC
T ss_conf 28898899988987578778980899907
No 63
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=53.29 E-value=12 Score=18.49 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98999999998673
Q gi|254780583|r 240 SNLAVFTELRIRKN 253 (256)
Q Consensus 240 ~~~~~f~~lR~~kd 253 (256)
+|.++-..|+++.|
T Consensus 305 TPeqVAd~l~~y~~ 318 (346)
T TIGR03565 305 DPETVAARIREYQD 318 (346)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 89999999999998
No 64
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=52.99 E-value=8.1 Score=19.56 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=41.2
Q ss_pred CEEEEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCC-------CCEEEEEECCCCHHHHCHHHHHHHHC
Q ss_conf 1453011057626999988998499986999899999999859-------96439998589843300000111100
Q gi|254780583|r 4 LNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKG-------WFLTHIFNTHHHIDHTRANLNLKKFF 72 (256)
Q Consensus 4 ~~i~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~-------~~i~~Il~TH~H~DHigg~~~l~~~~ 72 (256)
+.+.+| ||-+.+..|+-+.--.+|++..|.+.++... ..+ -+.-|--||.+..-.+|+++-
T Consensus 49 ~~vavP------SWgvgtgGTRFArFpg~GepRniFdkieDcAvi~qLT~atP--~VsLHIPWDKved~~~Lke~a 116 (430)
T COG4952 49 FKVAVP------SWGVGTGGTRFARFPGEGEPRNIFDKIEDCAVIHQLTRATP--SVSLHIPWDKVEDPERLKEFA 116 (430)
T ss_pred HEEECC------CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC--CEEEECCHHCCCCHHHHHHHH
T ss_conf 743166------54336887336546899984007788778899999855798--526635700016999999999
No 65
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=52.47 E-value=17 Score=17.40 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=3.5
Q ss_pred HHHHHHHHCC
Q ss_conf 9999999859
Q gi|254780583|r 37 IISKMLREKG 46 (256)
Q Consensus 37 ~i~~~l~~~~ 46 (256)
.|++..++.+
T Consensus 65 ~Ii~~A~~~g 74 (449)
T PRK06111 65 KIIEIAKKTG 74 (449)
T ss_pred HHHHHHHHHC
T ss_conf 9999999839
No 66
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=50.80 E-value=20 Score=17.03 Aligned_cols=11 Identities=18% Similarity=0.030 Sum_probs=4.0
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999859
Q gi|254780583|r 36 YIISKMLREKG 46 (256)
Q Consensus 36 ~~i~~~l~~~~ 46 (256)
+.|++.+++.+
T Consensus 64 ~~Ii~~A~~~g 74 (449)
T PRK08591 64 PAIISAAEITG 74 (449)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999829
No 67
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=50.60 E-value=19 Score=17.15 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHCCCCCH-HHHHHHHHHHH
Q ss_conf 6520458898775023447-89999999998
Q gi|254780583|r 171 HEYTENNAYFALSCDPHNL-ELQKYCSKVKS 200 (256)
Q Consensus 171 HeYt~~nl~Fa~~~~p~n~-~~~~~~~~~~~ 200 (256)
|--+..|.+|++.|.-..+ .+.++...+-.
T Consensus 93 ~rTv~eNVAl~L~V~G~~~~~I~~rV~~~L~ 123 (215)
T TIGR02673 93 DRTVYENVALPLEVRGKKKREIQRRVEAALR 123 (215)
T ss_pred CCCHHHHCCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 1661341121011138880336789999998
No 68
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=49.60 E-value=21 Score=16.82 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=4.0
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999859
Q gi|254780583|r 36 YIISKMLREKG 46 (256)
Q Consensus 36 ~~i~~~l~~~~ 46 (256)
+.|++.+++.+
T Consensus 67 ~~Ii~~A~~~g 77 (458)
T PRK12833 67 AAILAAARQCG 77 (458)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999829
No 69
>PRK02270 consensus
Probab=48.86 E-value=22 Score=16.72 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=13.5
Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 530110576269999889--984999869
Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
+.+..|.|.=.|+-..+. ++.+++|-+
T Consensus 32 ~~~~~F~DGE~~v~i~esvrg~dV~ivqs 60 (327)
T PRK02270 32 IEKTVFADGEVLLKSKETVRNRDVFIVAS 60 (327)
T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEECC
T ss_conf 28899899988984278778980899878
No 70
>KOG1448 consensus
Probab=48.65 E-value=22 Score=16.70 Aligned_cols=28 Identities=4% Similarity=0.001 Sum_probs=11.0
Q ss_pred EEEEEECCCEEEEEEEC--CCCEEEEECCC
Q ss_conf 53011057626999988--99849998699
Q gi|254780583|r 6 IAISLYHDNFCILIHNH--KYRLTAAIDAP 33 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~--~t~~~viIDpg 33 (256)
|.+..|+|-..|+=..+ .+..+.+|-+|
T Consensus 30 v~~kkf~nge~~v~i~esvR~~dV~iiqsg 59 (316)
T KOG1448 30 VNLKKFSNGETSVQIGESVRGEDVYIIQSG 59 (316)
T ss_pred EEEEECCCCCEEEECCCCCCCCCEEEECCC
T ss_conf 356883688577853533155737996258
No 71
>PRK05259 consensus
Probab=48.11 E-value=23 Score=16.65 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=12.7
Q ss_pred EEEEEECCCEEEEEEEC--CCCEEEEEC
Q ss_conf 53011057626999988--998499986
Q gi|254780583|r 6 IAISLYHDNFCILIHNH--KYRLTAAID 31 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~--~t~~~viID 31 (256)
+.+..|.|-=.|+-..+ .++.+++|-
T Consensus 27 ~~~~~F~DGE~~v~i~~~vrg~dV~ivq 54 (310)
T PRK05259 27 ASVRRFADQEIFVEIQENVRGEDVFVIQ 54 (310)
T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEE
T ss_conf 2889889998899647877899889990
No 72
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=48.04 E-value=19 Score=17.21 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=4.6
Q ss_pred CCCEEEEECC
Q ss_conf 9984999869
Q gi|254780583|r 23 KYRLTAAIDA 32 (256)
Q Consensus 23 ~t~~~viIDp 32 (256)
.+....+|-|
T Consensus 26 ~Ge~~aliG~ 35 (273)
T PRK13547 26 PGRVTALLGR 35 (273)
T ss_pred CCCEEEEECC
T ss_conf 9989999999
No 73
>PRK02039 consensus
Probab=47.98 E-value=23 Score=16.64 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=14.1
Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 530110576269999889--984999869
Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
+.+..|.|.=.|+-..+. ++.+++|-+
T Consensus 32 ~~~~~F~DGE~~v~i~esvrg~dV~ivqs 60 (316)
T PRK02039 32 AMVSRFSDGEIQVEIQENVRGKDVFVLQS 60 (316)
T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEECC
T ss_conf 18998899988986378768998899928
No 74
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=47.52 E-value=14 Score=18.06 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=8.3
Q ss_pred CEEECCCCCHHHHHHHHHHC
Q ss_conf 50201665204588987750
Q gi|254780583|r 165 THIYFGHEYTENNAYFALSC 184 (256)
Q Consensus 165 t~i~pGHeYt~~nl~Fa~~~ 184 (256)
|+|.--| |+.+|..|
T Consensus 195 TivIVTH-----nMqQA~Ri 209 (248)
T TIGR00972 195 TIVIVTH-----NMQQAARI 209 (248)
T ss_pred EEEEEEC-----CHHHHHHH
T ss_conf 7998817-----75678999
No 75
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=47.25 E-value=23 Score=16.63 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHH-HHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 5675226861465431377043046134466631567766-544201344650201665204588987750234478999
Q gi|254780583|r 115 TIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFES-LEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQK 193 (256)
Q Consensus 115 T~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~S-l~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~ 193 (256)
+.+.|.|..++.+.+|.|+.+ -..-++.. |..+ +. ++++..++++..+|++-.-. -..+.--||+++.=++
T Consensus 53 ~~~~i~Y~s~dg~yli~G~l~-d~~~~~~~--nlt~--~~~~~~~~~l~~~~iv~~~~~~k---~~i~VFTDpdCpYCrk 124 (232)
T PRK10877 53 TESGVLYITDDGKHIIQGPMY-DVSGTAPV--NVTN--QLLLKQLNALEKEMIVYKAPQEK---HVITVFTDITCGYCHK 124 (232)
T ss_pred ECCEEEEECCCCCEEEEEEEE-ECCCCCCC--CHHH--HHHHHHHHHHHHHCEEECCCCCC---EEEEEEECCCCHHHHH
T ss_conf 899789986998889840126-75788876--6779--99998874536538264378875---7999996999878999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999888578
Q gi|254780583|r 194 YCSKVKSMRSQN 205 (256)
Q Consensus 194 ~~~~~~~~~~~~ 205 (256)
...++++.-..|
T Consensus 125 lh~el~~~~~~g 136 (232)
T PRK10877 125 LHEQMKDYNALG 136 (232)
T ss_pred HHHHHHHHHCCC
T ss_conf 999998610267
No 76
>PRK08462 biotin carboxylase; Validated
Probab=46.80 E-value=22 Score=16.69 Aligned_cols=22 Identities=9% Similarity=-0.124 Sum_probs=9.8
Q ss_pred EEEEECCC-------CHHHHHHHHHHCCC
Q ss_conf 49998699-------98999999998599
Q gi|254780583|r 26 LTAAIDAP-------DTYIISKMLREKGW 47 (256)
Q Consensus 26 ~~viIDpg-------d~~~i~~~l~~~~~ 47 (256)
+++.|.|+ +.+.|++.+++.+.
T Consensus 49 ~~~~ig~~~~~~sYln~~~Ii~~a~~~~~ 77 (446)
T PRK08462 49 AKICIGGAKSSESYLNIPAIISAAEIFEA 77 (446)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98982899843341489999999999591
No 77
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=46.67 E-value=24 Score=16.52 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=8.3
Q ss_pred CCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 46502016652045889877502
Q gi|254780583|r 163 DKTHIYFGHEYTENNAYFALSCD 185 (256)
Q Consensus 163 ~~t~i~pGHeYt~~nl~Fa~~~~ 185 (256)
+++.| -| ...|+.|-+.+.
T Consensus 406 ~e~~I-~G---v~Tni~~l~~il 424 (471)
T PRK07178 406 DDMRV-QG---VKTTAPYYQEIL 424 (471)
T ss_pred HCCEE-EC---CCCCHHHHHHHH
T ss_conf 26599-79---468699999986
No 78
>PRK01999 consensus
Probab=46.38 E-value=24 Score=16.48 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=15.0
Q ss_pred EEEEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 4530110576269999889--984999869
Q gi|254780583|r 5 NIAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 5 ~i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
.+.+..|.|.=+|+-..+. +..+++|-+
T Consensus 31 ~~~~~~F~DGE~~v~i~~~vrg~dV~ivqs 60 (311)
T PRK01999 31 NMNISHFADGEFAVSYEESIRGADVFLVQS 60 (311)
T ss_pred EEEEEECCCCCEEEEECCCCCCCEEEEECC
T ss_conf 128898899988986178767983899889
No 79
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=45.99 E-value=11 Score=18.71 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=8.3
Q ss_pred EEEEEEECCCCEEEEEC-CC
Q ss_conf 26999988998499986-99
Q gi|254780583|r 15 FCILIHNHKYRLTAAID-AP 33 (256)
Q Consensus 15 y~YlI~d~~t~~~viID-pg 33 (256)
|+|+-. ++.+.+-+|| ||
T Consensus 42 FA~~~l-~~g~~~g~VDVPG 60 (615)
T PRK10512 42 YAYWPQ-PDGRVLGFIDVPG 60 (615)
T ss_pred EEEEEC-CCCCEEEEEECCC
T ss_conf 075557-9997899987998
No 80
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=45.62 E-value=25 Score=16.40 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCC-CCCCCEEEEEHHCCCCCCCCCCCCCC
Q ss_conf 9999999985996---4399985898433000001111000101200012343-23322033101001111222331025
Q gi|254780583|r 36 YIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSK-IPGIDHGLSDGDTFDFGSHPIKIIAT 111 (256)
Q Consensus 36 ~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~-i~~~~~~l~dgd~i~ig~~~~~vi~t 111 (256)
..+.+.+++.+.+ +..+..|= -.-|.-+........-.++.+|...... .|.++ -.+++||-..+++..
T Consensus 174 ~~l~~~le~l~~~~~~I~~~~~TG-YGR~~v~~~~~aD~~~~Ei~ah~kgA~~f~p~~d------tIiDIGGQD~K~i~i 246 (396)
T COG1924 174 KALKEALEELGEKLEEILGLGVTG-YGRNLVGAALGADKVVVEISAHAKGARYFAPDVD------TVIDIGGQDSKVIKL 246 (396)
T ss_pred HHHHHHHHHCCCCHHEEEEEEEEC-CCHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCC------EEEEECCCCEEEEEE
T ss_conf 999999998064712122243221-2087763330577432543036778987288986------799856850368997
Q ss_pred CCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 544567522686146543137704304613446663156776654420
Q gi|254780583|r 112 PGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIK 159 (256)
Q Consensus 112 PGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~ 159 (256)
- .|-++=+..+++. ++|||||+|-.++.|--+++.+.
T Consensus 247 ~---dG~v~df~mN~~C--------AAGtGrFLE~~A~~Lgv~v~E~~ 283 (396)
T COG1924 247 E---DGKVDDFTMNDKC--------AAGTGRFLEVIARRLGVDVEELG 283 (396)
T ss_pred E---CCEEEEEEECCCC--------CCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 1---8814225764610--------24665389999998299789999
No 81
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=44.77 E-value=15 Score=17.80 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHHHHHHHCCC--------EEEECCCCCCCCCCCCEEEEEHHCCCC--CC--CCCCCCCCCCCCCCCCEEEEC
Q ss_conf 00011110001--------012000123432332203310100111--12--223310255445675226861
Q gi|254780583|r 64 ANLNLKKFFNC--------TIFGPLEESSKIPGIDHGLSDGDTFDF--GS--HPIKIIATPGHTIGHICYHFM 124 (256)
Q Consensus 64 g~~~l~~~~~~--------~v~~~~~~~~~i~~~~~~l~dgd~i~i--g~--~~~~vi~tPGHT~g~i~~~~~ 124 (256)
.|..|++.++. -+..+..+..+ ..+++||.+++ ++ +++-++-.|||.++.|+.-+.
T Consensus 20 nNpWLQElPDPiTk~tWDN~~~isp~~A~~-----lgi~~gd~v~l~~~~~si~~Pv~i~PG~~~~tv~l~lG 87 (137)
T cd02784 20 NNAWLQELPRPLTKLVWDNAALVSPRTAEA-----LGLLQGDVVRIRRGGRTIELPVWIQPGHAEGVVLLALG 87 (137)
T ss_pred CCHHHHHCCCCHHHEEECCCEEECHHHHHH-----HCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCC
T ss_conf 597587589730310774604589999998-----47977888999968927997589867868993897757
No 82
>PRK05038 consensus
Probab=44.14 E-value=26 Score=16.26 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=14.7
Q ss_pred EEEEEECCCEEEEEEEC--CCCEEEEECC
Q ss_conf 53011057626999988--9984999869
Q gi|254780583|r 6 IAISLYHDNFCILIHNH--KYRLTAAIDA 32 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~--~t~~~viIDp 32 (256)
+.+..|.|.=+|+-..+ .+..+++|-.
T Consensus 30 ~~~~~F~DGE~~v~i~~~vrg~dV~ivqs 58 (315)
T PRK05038 30 AAVGRFSDGEVSVQINENVRGGDVFIIQS 58 (315)
T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEECC
T ss_conf 07888799988988788778995899858
No 83
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=43.98 E-value=26 Score=16.24 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=9.8
Q ss_pred HHHHHHHHHHCCC-CCCEEECCC
Q ss_conf 6776654420134-465020166
Q gi|254780583|r 150 EMFESLEKIKSFS-DKTHIYFGH 171 (256)
Q Consensus 150 ~l~~Sl~kl~~Lp-~~t~i~pGH 171 (256)
.|.+.-+.|+.-. .+..+++-|
T Consensus 280 Tl~~aA~~Lk~~GA~~V~a~aTH 302 (381)
T PRK06827 280 SVLDAAKELKSRGAKKIICAVSF 302 (381)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 89999999998799889999973
No 84
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=43.61 E-value=8.6 Score=19.39 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=9.6
Q ss_pred CHHHHHHHCCCCCCCC
Q ss_conf 7899987282246789
Q gi|254780583|r 212 TISLEKKVNPFLRIEN 227 (256)
Q Consensus 212 tl~~Ek~~NPflr~~~ 227 (256)
.|..|.++|.-||+.+
T Consensus 334 RL~~El~~NValrVe~ 349 (603)
T COG1217 334 RLNKELETNVALRVEE 349 (603)
T ss_pred HHHHHHHHCEEEEEEE
T ss_conf 9998764163599873
No 85
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.53 E-value=28 Score=16.10 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=15.5
Q ss_pred EEEEEEECCCEEEEEEEC--CCCEEEEECC
Q ss_conf 453011057626999988--9984999869
Q gi|254780583|r 5 NIAISLYHDNFCILIHNH--KYRLTAAIDA 32 (256)
Q Consensus 5 ~i~ip~~~DNy~YlI~d~--~t~~~viIDp 32 (256)
.+.+..|.|-=.|+-..+ .+..+++|-+
T Consensus 32 ~~~~~~F~DGE~~v~i~e~vrg~dv~ivqs 61 (319)
T PRK04923 32 KALVTRFSDGEVQVEIEESVRRQEVFVIQP 61 (319)
T ss_pred EEEEEECCCCCEEEEECCCCCCCCEEEECC
T ss_conf 028998899988887578757998899937
No 86
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.10 E-value=28 Score=16.06 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=14.7
Q ss_pred EEEEEEECCCEEEEEEECC--CCEEEEEC
Q ss_conf 4530110576269999889--98499986
Q gi|254780583|r 5 NIAISLYHDNFCILIHNHK--YRLTAAID 31 (256)
Q Consensus 5 ~i~ip~~~DNy~YlI~d~~--t~~~viID 31 (256)
.+.+..|.|.=.|+-..+. ++.+++|-
T Consensus 26 ~~~~~~F~DGE~~v~i~~~vrg~dV~ivq 54 (309)
T PRK01259 26 KASVGRFSDGEISVEINENVRGKDVFIIQ 54 (309)
T ss_pred EEEEEECCCCCEEEEECCCCCCCCEEEEC
T ss_conf 02788889998898637887798289986
No 87
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=41.36 E-value=29 Score=15.98 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=13.3
Q ss_pred EEEEECCCC--HHHHHHHHHHCCCCEEE
Q ss_conf 499986999--89999999985996439
Q gi|254780583|r 26 LTAAIDAPD--TYIISKMLREKGWFLTH 51 (256)
Q Consensus 26 ~~viIDpgd--~~~i~~~l~~~~~~i~~ 51 (256)
-+.+||--. -+.+...++..|+++..
T Consensus 6 ~V~vVDDD~~vr~al~~Ll~s~G~~v~~ 33 (202)
T COG4566 6 LVHVVDDDESVRDALAFLLESAGFQVKC 33 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 6899768488999999999838953665
No 88
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=41.33 E-value=27 Score=16.14 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
Q ss_conf 234478999999999888578986678789998728224
Q gi|254780583|r 185 DPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFL 223 (256)
Q Consensus 185 ~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPfl 223 (256)
+|+....+.|+..+++..+++..++|+.|.+|...|-|=
T Consensus 241 dP~S~gA~aY~~LA~ei~en~~~~~p~pl~~~~l~~l~~ 279 (292)
T PRK13230 241 APDSEISKIYRELAEKIYENNTGTIPNPLENEQIMQIGK 279 (292)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 989978999999999999679997888899899999999
No 89
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=41.26 E-value=29 Score=15.98 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=44.0
Q ss_pred CCCCEEEECCCCC--CCCCCEEEECCCCCCCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 6752268614654--313770430461344666315677665-4420134465020166520458898775023447899
Q gi|254780583|r 116 IGHICYHFMNDHF--LCVGDTLFSLGCGRIFEDSYAEMFESL-EKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQ 192 (256)
Q Consensus 116 ~g~i~~~~~~~~~--lFtGDtLF~~g~Gr~~~G~~~~l~~Sl-~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~ 192 (256)
.+.+.+...++++ -+.+|.||..|--.+- ....+++..| .-|..+|.. +..-||= .|.-+.....|+|+.|-
T Consensus 119 ~~~v~v~~~~~gl~I~l~~~~lF~~GSA~L~-~~~~~lL~~ia~~L~~~~n~-I~I~GHT---D~~Pi~~~~~~sNWeLS 193 (285)
T PRK09038 119 SGQVTVRRNELWIEIEINSSLLFGSGDALLS-DEAFAILEKVAEVLKPFPNP-IHVEGFT---DNVPIATAQFPSNWELS 193 (285)
T ss_pred CCCEEEEECCCEEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCE-EEEEEEC---CCCCCCCCCCCCHHHHH
T ss_conf 5835999739979999568868688843249-87999999999999843872-8999857---88765556678648999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780583|r 193 KYCS 196 (256)
Q Consensus 193 ~~~~ 196 (256)
..++
T Consensus 194 aaRA 197 (285)
T PRK09038 194 AARA 197 (285)
T ss_pred HHHH
T ss_conf 9999
No 90
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=40.27 E-value=30 Score=15.88 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=13.7
Q ss_pred EEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 30110576269999889--984999869
Q gi|254780583|r 7 AISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 7 ~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
.+.-|.|-=.|+-+.+. ++.+++|-+
T Consensus 45 ~~~~F~DGE~~v~i~e~VRg~dV~Iiqs 72 (340)
T PRK00553 45 VIQKFADGETYIRFDESVRNKDVVIFQS 72 (340)
T ss_pred EEEECCCCCEEEEECCCCCCCCEEEECC
T ss_conf 7898799978985278768998899878
No 91
>PRK07033 hypothetical protein; Provisional
Probab=40.24 E-value=26 Score=16.30 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHH-HHHHHH
Q ss_conf 4313770430461344666315677665-44201344650201665204588987750234478999999-999888
Q gi|254780583|r 128 FLCVGDTLFSLGCGRIFEDSYAEMFESL-EKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCS-KVKSMR 202 (256)
Q Consensus 128 ~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl-~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~-~~~~~~ 202 (256)
+.|.||-+|..|--.+- -.+..+.+.+ +.|.+.|....| -||- .|.-...+-.|+|..+-...+ .|....
T Consensus 312 v~l~~~~lF~sGsa~l~-~~~~~ll~~ia~~l~~~~g~i~V-~GHT---Dn~Pi~s~~f~SNw~LS~aRA~~V~~~l 383 (429)
T PRK07033 312 VTLRGDGLFASASTSVR-DRYQPVLLRVADALNQVKGNVLV-TGYS---DNRPIRTARFPSNWHLSQARAQAVRALL 383 (429)
T ss_pred EEECCCCCCCCCCHHHC-HHHHHHHHHHHHHHHCCCCEEEE-EEEC---CCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99788888788661008-66899999999998479980899-8838---9988877888975999999999999999
No 92
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=39.96 E-value=30 Score=15.85 Aligned_cols=26 Identities=8% Similarity=-0.144 Sum_probs=13.6
Q ss_pred EEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 30110576269999889--984999869
Q gi|254780583|r 7 AISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 7 ~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
.+..|.|.=.|+-+.+. +..+++|-+
T Consensus 49 ~~~kF~DGE~~v~i~esVrg~dV~iiqs 76 (331)
T PRK02812 49 IRKRFADGELYVQIQESIRGCDVYLIQP 76 (331)
T ss_pred EEEECCCCCEEEEECCCCCCCEEEEECC
T ss_conf 7898899988986568778876999837
No 93
>PRK01506 consensus
Probab=39.93 E-value=30 Score=15.84 Aligned_cols=27 Identities=7% Similarity=-0.028 Sum_probs=15.0
Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEECC
Q ss_conf 530110576269999889--984999869
Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256)
+.+..|.|.-.|+-..+. +..+++|-.
T Consensus 36 ~~~~~F~DGE~~vri~~~vrg~dV~ivqs 64 (317)
T PRK01506 36 CSVDRFSDGEVQINIEESIRGCDVFIIQS 64 (317)
T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEECC
T ss_conf 17888799988998778778982899858
No 94
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=39.66 E-value=27 Score=16.18 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=12.3
Q ss_pred EEECCCEEEEEEECCCCEEEEECCC
Q ss_conf 1105762699998899849998699
Q gi|254780583|r 9 SLYHDNFCILIHNHKYRLTAAIDAP 33 (256)
Q Consensus 9 p~~~DNy~YlI~d~~t~~~viIDpg 33 (256)
..+-||-+.=+ +. +-.++|-|.
T Consensus 10 k~~~d~vsl~i--p~-GitaIvGps 31 (197)
T cd03278 10 KSFADKTTIPF--PP-GLTAIVGPN 31 (197)
T ss_pred CCCCCCEEEEC--CC-CEEEEECCC
T ss_conf 00168769973--89-828999999
No 95
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain; InterPro: IPR005976 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=39.22 E-value=31 Score=15.77 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=11.2
Q ss_pred CEEEEECCCCH-HHHHHHHHHCCC
Q ss_conf 84999869998-999999998599
Q gi|254780583|r 25 RLTAAIDAPDT-YIISKMLREKGW 47 (256)
Q Consensus 25 ~~~viIDpgd~-~~i~~~l~~~~~ 47 (256)
+||+.|-|+.| +|+=+.|...|+
T Consensus 58 REALtvNPAKACQPLGAvLAA~GF 81 (526)
T TIGR01286 58 REALTVNPAKACQPLGAVLAALGF 81 (526)
T ss_pred HHHHCCCCHHCCCHHHHHHHHHCC
T ss_conf 022103752203417999997121
No 96
>PRK01132 consensus
Probab=38.23 E-value=32 Score=15.67 Aligned_cols=25 Identities=16% Similarity=-0.018 Sum_probs=12.6
Q ss_pred EEEEECCCEEEEEEEC--CCCEEEEEC
Q ss_conf 3011057626999988--998499986
Q gi|254780583|r 7 AISLYHDNFCILIHNH--KYRLTAAID 31 (256)
Q Consensus 7 ~ip~~~DNy~YlI~d~--~t~~~viID 31 (256)
.+..|.|-=.|+-..+ .+..+++|-
T Consensus 28 ~~~~F~DGE~~v~i~~~vrg~dV~iv~ 54 (286)
T PRK01132 28 TERRFPDGELYVRYDTDLKGRDVFIIG 54 (286)
T ss_pred EEEECCCCCEEEEECCCCCCCEEEEEC
T ss_conf 889889997899837876898799988
No 97
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=37.84 E-value=9.1 Score=19.22 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=50.3
Q ss_pred HHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH----C-CCEEE--ECCCC---------------------CCCCCCC
Q ss_conf 9999998599643999858984330000011110----0-01012--00012---------------------3432332
Q gi|254780583|r 38 ISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF----F-NCTIF--GPLEE---------------------SSKIPGI 89 (256)
Q Consensus 38 i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~----~-~~~v~--~~~~~---------------------~~~i~~~ 89 (256)
+.+.+++.|+.+..|.++-.+-.. |..+|.++ . +-.|| |..+. ...+|+.
T Consensus 116 v~~~~~~~gl~~~~V~lvSa~~g~--gi~~l~~~i~~~~~~~dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~S~~PGT 193 (360)
T TIGR03597 116 MKKRAKELGLKPVDIILVSAKKGN--GIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGT 193 (360)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCC
T ss_conf 999999859983668999688898--999999999987169958999168665899999998761677772364589985
Q ss_pred CEEEEEHHCCCCCCCCCCCCCCCC-CCCCCCEEEECCCC---------------CCCCCCEEEECCCCCC
Q ss_conf 203310100111122233102554-45675226861465---------------4313770430461344
Q gi|254780583|r 90 DHGLSDGDTFDFGSHPIKIIATPG-HTIGHICYHFMNDH---------------FLCVGDTLFSLGCGRI 143 (256)
Q Consensus 90 ~~~l~dgd~i~ig~~~~~vi~tPG-HT~g~i~~~~~~~~---------------~lFtGDtLF~~g~Gr~ 143 (256)
+..+ -.+.++ ....++.||| ..++++.-++..+. -+-.|-+||.||.+|+
T Consensus 194 TL~~---i~i~l~-~~~~i~DTPGi~~~~q~~~~L~~~~lk~i~p~k~i~p~t~~l~~gqslfiGGL~ri 259 (360)
T TIGR03597 194 TLDL---IEIPLD-DGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARF 259 (360)
T ss_pred CCCC---EEEECC-CCCEEECCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCCEEEECCEEEE
T ss_conf 3330---787538-99557457765574275554499887421776510652789789728999338999
No 98
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=37.51 E-value=33 Score=15.60 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 989899999999867
Q gi|254780583|r 238 NASNLAVFTELRIRK 252 (256)
Q Consensus 238 ~~~~~~~f~~lR~~k 252 (256)
..+||+.+..||+.-
T Consensus 593 ~EdPWeRL~~lRk~~ 607 (1149)
T COG1038 593 KEDPWERLERLRKAV 607 (1149)
T ss_pred CCCHHHHHHHHHHHC
T ss_conf 148889999998768
No 99
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=37.44 E-value=33 Score=15.60 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCCEEE
Q ss_conf 9999999985996439
Q gi|254780583|r 36 YIISKMLREKGWFLTH 51 (256)
Q Consensus 36 ~~i~~~l~~~~~~i~~ 51 (256)
..+...++++|+++.+
T Consensus 18 ~~L~~~l~~~G~~v~~ 33 (223)
T PRK00090 18 AALAQALREQGYRVAG 33 (223)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 9999999978994899
No 100
>pfam06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N). This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (EC:5.4.2.1). The family is found in conjunction with pfam01676 (located in the C-terminal region of the protein).
Probab=36.95 E-value=17 Score=17.40 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHCCCCE--EEEEE---CCCCHHHHCHHHHHHHHCCCE-EEECCCC
Q ss_conf 999999859964--39998---589843300000111100010-1200012
Q gi|254780583|r 38 ISKMLREKGWFL--THIFN---THHHIDHTRANLNLKKFFNCT-IFGPLEE 82 (256)
Q Consensus 38 i~~~l~~~~~~i--~~Il~---TH~H~DHigg~~~l~~~~~~~-v~~~~~~ 82 (256)
.++.+++.+-.+ ..++. -|.|.||+-++..+.+..+++ ||.|.-.
T Consensus 19 ~~~~~k~~~~~lHL~GL~SdGGVHShidHl~al~~~a~~~gv~~v~lH~f~ 69 (223)
T pfam06415 19 AIDHVKKNNGALHLIGLLSDGGVHSHIDHLFALLKLAKERGVKKVYIHAFT 69 (223)
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 999999739859999941499763247999999999997188708999860
No 101
>KOG0157 consensus
Probab=36.77 E-value=24 Score=16.44 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 65020166520458898775023447899999999988
Q gi|254780583|r 164 KTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSM 201 (256)
Q Consensus 164 ~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~ 201 (256)
+|.++-|||-|.+-+.|+.-....||.+++++.+--..
T Consensus 297 ~tf~faG~DTTs~~ltw~l~lLa~hP~vq~k~~eE~~~ 334 (497)
T KOG0157 297 DTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDE 334 (497)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 77400033157999999999998697999999999999
No 102
>PRK03675 consensus
Probab=36.22 E-value=35 Score=15.47 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=27.5
Q ss_pred CEEEEEEECCCEEEEEEECCCCEEEEECCC---CHHH------HHHHHHHCCC
Q ss_conf 145301105762699998899849998699---9899------9999998599
Q gi|254780583|r 4 LNIAISLYHDNFCILIHNHKYRLTAAIDAP---DTYI------ISKMLREKGW 47 (256)
Q Consensus 4 ~~i~ip~~~DNy~YlI~d~~t~~~viIDpg---d~~~------i~~~l~~~~~ 47 (256)
..|.+..|.|.=.|+-..+..+.+++|-+. .-+. +++.+++.+.
T Consensus 22 ~~~e~~~FpDGE~~vri~e~g~dv~iiqs~~~p~nd~lmELll~~dAlr~a~A 74 (279)
T PRK03675 22 LNVEIKKFPDGEKYVRVLENGDEAIVVQSTYYPQDEKLIEALLLGDALREAGF 74 (279)
T ss_pred EEEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 20378988999889986578982899878999973679999999999998278
No 103
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=36.12 E-value=15 Score=17.91 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=19.9
Q ss_pred CEEEEECCCC-----HHHHHHHHHHCCCCEEEEEE
Q ss_conf 8499986999-----89999999985996439998
Q gi|254780583|r 25 RLTAAIDAPD-----TYIISKMLREKGWFLTHIFN 54 (256)
Q Consensus 25 ~~~viIDpgd-----~~~i~~~l~~~~~~i~~Il~ 54 (256)
+-.++||+.+ ..=|++.+-+.||++--|++
T Consensus 96 GvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViN 130 (609)
T TIGR01394 96 GVLLLVDASEGPMPQTRFVLKKALELGLKPIVVIN 130 (609)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 58999857888988534789999956893699971
No 104
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=34.96 E-value=36 Score=15.34 Aligned_cols=24 Identities=4% Similarity=-0.175 Sum_probs=9.4
Q ss_pred ECCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 8899849998699989999999985
Q gi|254780583|r 21 NHKYRLTAAIDAPDTYIISKMLREK 45 (256)
Q Consensus 21 d~~t~~~viIDpgd~~~i~~~l~~~ 45 (256)
|-.|++..+.+.. .+.+...|.+.
T Consensus 141 dlstGef~~~~~~-~~~l~~~l~r~ 164 (843)
T COG0249 141 DLSTGEFFVSEFE-REKLLSELKRL 164 (843)
T ss_pred ECCCCEEEEEEEE-HHHHHHHHHHC
T ss_conf 8126749999832-89999999848
No 105
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=34.85 E-value=34 Score=15.55 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=48.5
Q ss_pred EEEEEEECCC---EEEEEEECCCCEEE-------EEC----CC-CH-------HHHHHHHHHCCC----CEEEEEECCCC
Q ss_conf 4530110576---26999988998499-------986----99-98-------999999998599----64399985898
Q gi|254780583|r 5 NIAISLYHDN---FCILIHNHKYRLTA-------AID----AP-DT-------YIISKMLREKGW----FLTHIFNTHHH 58 (256)
Q Consensus 5 ~i~ip~~~DN---y~YlI~d~~t~~~v-------iID----pg-d~-------~~i~~~l~~~~~----~i~~Il~TH~H 58 (256)
.|-|-+|-|| +.||=- +.|- +|- |+ ++ +.-.+..+.-|+ ++..++-..+.
T Consensus 209 H~E~QVLAD~~GN~vyLgE----RDCSiQRR~QKllEEaPsP~Lt~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~~~~ 284 (451)
T TIGR00514 209 HVEIQVLADKYGNVVYLGE----RDCSIQRRNQKLLEEAPSPALTSELREKMGDAAVKAAKSIGYTGAGTVEFLLDKNGQ 284 (451)
T ss_pred EEEEEEEECCCCCEEEECC----CCCCHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCC
T ss_conf 0799987517888789712----146200046544654688877889999998999999986498003516888625887
Q ss_pred -HHHHCHHHHHH-HHCCCE-EEECCCCCCCCCCCCEEEEEHHC-------CCCCCCCCCCC---CCCCC----CCCCCEE
Q ss_conf -43300000111-100010-12000123432332203310100-------11112223310---25544----5675226
Q gi|254780583|r 59 -IDHTRANLNLK-KFFNCT-IFGPLEESSKIPGIDHGLSDGDT-------FDFGSHPIKII---ATPGH----TIGHICY 121 (256)
Q Consensus 59 -~DHigg~~~l~-~~~~~~-v~~~~~~~~~i~~~~~~l~dgd~-------i~ig~~~~~vi---~tPGH----T~g~i~~ 121 (256)
+-.+.-|..++ ++|=.+ |+|- +.+... ..+..|+. +.+-|+.++|- +=|-| +||-|..
T Consensus 285 rFYFmEMNTRIQVEHPVTEmvtGv----DL~keQ-irvA~G~~L~~kQe~v~~~GHaieCRINAEDP~~~F~PsPG~i~~ 359 (451)
T TIGR00514 285 RFYFMEMNTRIQVEHPVTEMVTGV----DLIKEQ-IRVAAGEKLSLKQEDVKLRGHAIECRINAEDPIKNFLPSPGRITS 359 (451)
T ss_pred EEEEEEECCEEEEEECCEEEEECH----HHHHHH-HHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 357765176021110320146002----578889-987378956643114799988998651455878778688850155
Q ss_pred EECC
Q ss_conf 8614
Q gi|254780583|r 122 HFMN 125 (256)
Q Consensus 122 ~~~~ 125 (256)
|++.
T Consensus 360 ylpP 363 (451)
T TIGR00514 360 YLPP 363 (451)
T ss_pred CCCC
T ss_conf 4687
No 106
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase; InterPro: IPR010961 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents 5-aminoaevulinic acid (ALA) synthase (2.3.1.37 from EC), which catalyses the first stage of tetrapyrrole biosynthesis by the C4 pathway, namely the condensation of succinyl CoA and glycine. ALA synthase is a pyridoxal-phosphate-dependent enzyme. During catalysis, glycine initially binds to the enzyme cofactor, and after condensation with succinyl CoA, CoA, carbon dioxide and 5-aminolevulinic acid are produced .; GO: 0003870 5-aminolevulinate synthase activity, 0030170 pyridoxal phosphate binding, 0033014 tetrapyrrole biosynthetic process.
Probab=34.21 E-value=12 Score=18.39 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHC
Q ss_conf 699989999999985996439998589843300
Q gi|254780583|r 31 DAPDTYIISKMLREKGWFLTHIFNTHHHIDHTR 63 (256)
Q Consensus 31 Dpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHig 63 (256)
|.+....+++=|++.+.+ ..+-=|.-.+|..
T Consensus 138 D~LNHASMI~GIr~S~~~--k~iFrHND~~hLe 168 (427)
T TIGR01821 138 DELNHASMIEGIRRSGAE--KFIFRHNDVAHLE 168 (427)
T ss_pred CCCCHHHHHHHHHHCCCC--EEEEECCCHHHHH
T ss_conf 655635699998747895--0563059978999
No 107
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.17 E-value=37 Score=15.26 Aligned_cols=26 Identities=0% Similarity=-0.141 Sum_probs=13.5
Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEEC
Q ss_conf 530110576269999889--98499986
Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAID 31 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viID 31 (256)
+.+..|.|.=+|+-..+. ++.+++|-
T Consensus 16 ~~~~~F~DGE~~v~i~~~vrg~dV~Ivq 43 (304)
T PRK03092 16 TTARDFANGEIYVRFEESVRGCDAFVLQ 43 (304)
T ss_pred CEEEECCCCCEEEEECCCCCCCEEEEEC
T ss_conf 1789889998898747876798489991
No 108
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=33.96 E-value=31 Score=15.80 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=19.6
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHCCC--CCHHHHHHHHHH
Q ss_conf 420134465020166520458898775023--447899999999
Q gi|254780583|r 157 KIKSFSDKTHIYFGHEYTENNAYFALSCDP--HNLELQKYCSKV 198 (256)
Q Consensus 157 kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p--~n~~~~~~~~~~ 198 (256)
++.-...+..+|| -....|+.|.+..-. +...++.+..++
T Consensus 82 ~ig~VfQ~~~lf~--~TV~eNi~~~l~~~~~~~~~~~~~~v~~~ 123 (227)
T cd03260 82 RVGMVFQKPNPFP--GSIYDNVAYGLRLHGIKLKEELDERVEEA 123 (227)
T ss_pred CCEEECCCCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8268764776677--80999999999983899999999999999
No 109
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=33.85 E-value=27 Score=16.12 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCCCEEEECCCCCCCCCCEEEECCC-CCCCCCCHHHHHHHH-HHHHCC
Q ss_conf 6752268614654313770430461-344666315677665-442013
Q gi|254780583|r 116 IGHICYHFMNDHFLCVGDTLFSLGC-GRIFEDSYAEMFESL-EKIKSF 161 (256)
Q Consensus 116 ~g~i~~~~~~~~~lFtGDtLF~~g~-Gr~~~G~~~~l~~Sl-~kl~~L 161 (256)
.|.++-.+=..+.|-.||.+.+|.+ || ...|++.. ++|...
T Consensus 529 ~g~v~t~lv~~gtl~~gd~~v~g~~~g~-----vr~m~~~~g~~~~~a 571 (839)
T PRK05306 529 RGPVATVLVQNGTLKVGDIVVAGTTYGR-----VRAMVDDNGKRVKEA 571 (839)
T ss_pred CCCEEEEEEECCEECCCCEEEEECCCCC-----CEEEECCCCCCCCCC
T ss_conf 7505899984271325998998102055-----101588999898714
No 110
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006240 Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. These sequences describe a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle..
Probab=33.78 E-value=36 Score=15.35 Aligned_cols=56 Identities=7% Similarity=0.144 Sum_probs=26.0
Q ss_pred HHCCCC-CCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CCC----CCCHHHHHHHCCCCCCC
Q ss_conf 201344-6502016652045889877502344789999999998885789-866----78789998728224678
Q gi|254780583|r 158 IKSFSD-KTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNL-YTN----PSTISLEKKVNPFLRIE 226 (256)
Q Consensus 158 l~~Lp~-~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~-~tv----Pstl~~Ek~~NPflr~~ 226 (256)
+..+|. ..+|-=+| --+++.++++++..++...... +++ =++|==|=...-|+|..
T Consensus 151 ~~~~~~~~~~vviSr-------------~~~~~k~~~~l~nlek~lg~~~~~~~~SsLK~ClvAeG~aD~YpR~G 212 (263)
T TIGR01331 151 VREADSEPLLVVISR-------------SHAEEKTKEYLENLEKELGYDLVTSGGSSLKFCLVAEGSADIYPRLG 212 (263)
T ss_pred CCCCCCCCCHHHHHH-------------HHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEEECCC
T ss_conf 344776461101123-------------30128999999998886131025633035545453144022554568
No 111
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=33.68 E-value=38 Score=15.21 Aligned_cols=25 Identities=8% Similarity=0.231 Sum_probs=12.9
Q ss_pred CCCCC---CCCCCHHHHHHHHHHH-HCCC
Q ss_conf 46134---4666315677665442-0134
Q gi|254780583|r 138 LGCGR---IFEDSYAEMFESLEKI-KSFS 162 (256)
Q Consensus 138 ~g~Gr---~~~G~~~~l~~Sl~kl-~~Lp 162 (256)
|+.|+ +.+++..++|+.+..+ ..+|
T Consensus 229 Gs~~~Al~l~~~~~~~l~~~~~~ll~~~~ 257 (363)
T PRK07471 229 GSVGRALRLAGGDGLALYQRTTALLDTLP 257 (363)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998747985999999999997476
No 112
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; InterPro: IPR005975 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=33.64 E-value=38 Score=15.21 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 011112223310255445
Q gi|254780583|r 98 TFDFGSHPIKIIATPGHT 115 (256)
Q Consensus 98 ~i~ig~~~~~vi~tPGHT 115 (256)
.++.||.+++=|..=||+
T Consensus 225 ~~T~GGT~l~~i~~~g~s 242 (451)
T TIGR01285 225 PITLGGTTLEDIRELGQS 242 (451)
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 567899735999873688
No 113
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=33.44 E-value=30 Score=15.88 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 1112223310255445675
Q gi|254780583|r 100 DFGSHPIKIIATPGHTIGH 118 (256)
Q Consensus 100 ~ig~~~~~vi~tPGHT~g~ 118 (256)
.+.|+++++|.|||--++.
T Consensus 75 tv~G~kl~iIDTPGL~~~~ 93 (249)
T cd01853 75 TVDGFKLNIIDTPGLLESV 93 (249)
T ss_pred EECCEEEEEECCCCCCCCC
T ss_conf 5334489986089877665
No 114
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=33.16 E-value=39 Score=15.16 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=35.2
Q ss_pred EEE--CCC--CHHHHHHHHHHCCCCEEEEEECCCC--HHHHCHHH----HHHHHCCCEEEECCC
Q ss_conf 998--699--9899999999859964399985898--43300000----111100010120001
Q gi|254780583|r 28 AAI--DAP--DTYIISKMLREKGWFLTHIFNTHHH--IDHTRANL----NLKKFFNCTIFGPLE 81 (256)
Q Consensus 28 viI--Dpg--d~~~i~~~l~~~~~~i~~Il~TH~H--~DHigg~~----~l~~~~~~~v~~~~~ 81 (256)
+|| ||| |+-.+.=.+....+++.+|-.+++- .+++--|. ++..+.++|||.+..
T Consensus 2 vIiDtD~G~DDa~Al~lal~~p~~ev~gITtv~GN~~~~~~~~Na~~~l~~~g~~diPV~~Ga~ 65 (320)
T cd02653 2 VIIDCDPGIDDALALLYLLASPDLDVVGITTTAGNVPVEQVAANALGVLELLGRTDIPVYLGAD 65 (320)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 8999999779999999997689987999999589878999999999999983899998897988
No 115
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=33.00 E-value=33 Score=15.63 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=37.7
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 313770430461344666315677665-44201344650201665204588987750234478999999
Q gi|254780583|r 129 LCVGDTLFSLGCGRIFEDSYAEMFESL-EKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCS 196 (256)
Q Consensus 129 lFtGDtLF~~g~Gr~~~G~~~~l~~Sl-~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~ 196 (256)
.+.+|.||..|-..+- .....++.-| ..|..+|.+.. --|| | .|.-......|+|..+-..++
T Consensus 115 ~l~~~~lF~~Gsa~l~-~~~~~~L~~ia~~l~~~~~~I~-V~GH--T-D~~p~~~~~~~sNWeLS~aRA 178 (230)
T PRK06925 115 VLQEAVLFDTGEADVL-KNAEPLLHKIAVLLKTIPNDIQ-VEGH--T-DSRPISTYRYPSNWELSAARA 178 (230)
T ss_pred EECCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCEEE-EEEE--C-CCCCCCCCCCCCHHHHHHHHH
T ss_conf 9689878788965348-7799999999999973996389-9874--4-876555567885389999999
No 116
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.67 E-value=39 Score=15.11 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=25.6
Q ss_pred ECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCC--CCEEEEEECCC
Q ss_conf 057626999988998499986999899999999859--96439998589
Q gi|254780583|r 11 YHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKG--WFLTHIFNTHH 57 (256)
Q Consensus 11 ~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~--~~i~~Il~TH~ 57 (256)
+-.|=..|+.|+.| -..||.-...|++.|++.+ +.++-+++||.
T Consensus 156 La~~P~iLL~DEaT---SALDP~TT~sIL~LL~~In~~lglTIvlITHe 201 (339)
T COG1135 156 LANNPKILLCDEAT---SALDPETTQSILELLKDINRELGLTIVLITHE 201 (339)
T ss_pred HHCCCCEEEECCCC---CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECH
T ss_conf 72499889735842---33786779999999999899729789999160
No 117
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=32.17 E-value=40 Score=15.05 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=8.0
Q ss_pred CCCCCCCCCCEEEEC
Q ss_conf 146543137704304
Q gi|254780583|r 124 MNDHFLCVGDTLFSL 138 (256)
Q Consensus 124 ~~~~~lFtGDtLF~~ 138 (256)
.+.+++..-|.+-.|
T Consensus 140 ~Gk~VlIVDDViTTG 154 (201)
T PRK02277 140 AGKRCVIVDDVITSG 154 (201)
T ss_pred CCCEEEEEEECCCCC
T ss_conf 787899997023778
No 118
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820 This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=31.91 E-value=31 Score=15.74 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=22.8
Q ss_pred CCHHHHHHHCCCCCCCCH-H-HHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 878999872822467898-9-9997388998989999999986
Q gi|254780583|r 211 STISLEKKVNPFLRIENT-S-LRKNLNMENASNLAVFTELRIR 251 (256)
Q Consensus 211 stl~~Ek~~NPflr~~~~-~-~~~~~~~~~~~~~~~f~~lR~~ 251 (256)
|=|.|=..-||-||-... . |--.++.+.+++.|..+.+.++
T Consensus 572 TGLvE~yg~s~~Lr~l~NLv~VaG~~~~~~S~DrEE~~Ei~km 614 (790)
T TIGR02470 572 TGLVELYGRSKKLRELANLVVVAGKLDAKESKDREEQAEIEKM 614 (790)
T ss_pred HHHHHHHCCCHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 7788485048447816688888065686446787899999999
No 119
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=31.91 E-value=40 Score=15.03 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=16.6
Q ss_pred CCEEEEECCCC------HHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98499986999------8999999998599643999858
Q gi|254780583|r 24 YRLTAAIDAPD------TYIISKMLREKGWFLTHIFNTH 56 (256)
Q Consensus 24 t~~~viIDpgd------~~~i~~~l~~~~~~i~~Il~TH 56 (256)
...+++|||++ +..+++.+|+-.-....||+|+
T Consensus 113 ~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~ 151 (325)
T PRK08699 113 GLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred CCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 946999857777589999999998417888848999879
No 120
>PRK07034 hypothetical protein; Provisional
Probab=31.77 E-value=39 Score=15.09 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=43.5
Q ss_pred CCCCCEEEECCCC--CCCCCCEEEECCCCCCCCCCHHHHHHHHHHH----HCCCCCCEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 5675226861465--4313770430461344666315677665442----013446502016652045889877502344
Q gi|254780583|r 115 TIGHICYHFMNDH--FLCVGDTLFSLGCGRIFEDSYAEMFESLEKI----KSFSDKTHIYFGHEYTENNAYFALSCDPHN 188 (256)
Q Consensus 115 T~g~i~~~~~~~~--~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl----~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n 188 (256)
+.|=+..+-...+ ++|+||-+|.-|--++- ++.+.-|+|| ...|.|..| -||- .|--|-.+-.|+|
T Consensus 366 ~EGwltvrk~P~gwllif~sDGaF~~g~A~l~----~~f~~nieRLG~A~ApwpGdleV-iGHT---D~rPiRss~fp~N 437 (565)
T PRK07034 366 TEGWLTAYKHPQGWLLVFKSDGAFDVGKANVR----ADFMHNIERLGLAFAPWPGDLEV-IGHT---DSRPIRTSEFPDN 437 (565)
T ss_pred HHHHEEEEECCCCCEEEEECCCCCCCCCCCCC----HHHHHHHHHHHHHHCCCCCCEEE-ECCC---CCCCCCCCCCCCH
T ss_conf 52005402079741899824876443412036----98898899986763688886577-5147---8876437889840
Q ss_pred HHHHHHHH
Q ss_conf 78999999
Q gi|254780583|r 189 LELQKYCS 196 (256)
Q Consensus 189 ~~~~~~~~ 196 (256)
..+.....
T Consensus 438 ~~LSeARA 445 (565)
T PRK07034 438 QALSEARA 445 (565)
T ss_pred HHHHHHHH
T ss_conf 76788888
No 121
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=31.75 E-value=29 Score=16.00 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=40.6
Q ss_pred HCHHHHHHHHC-CCEEEECCCCCCCCCCCCEEEEEHHCCCC----CCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 00000111100-01012000123432332203310100111----12223310255445675226861
Q gi|254780583|r 62 TRANLNLKKFF-NCTIFGPLEESSKIPGIDHGLSDGDTFDF----GSHPIKIIATPGHTIGHICYHFM 124 (256)
Q Consensus 62 igg~~~l~~~~-~~~v~~~~~~~~~i~~~~~~l~dgd~i~i----g~~~~~vi~tPGHT~g~i~~~~~ 124 (256)
+..+..|.+.. .-.++.+.++..+ ..+++||.+.+ |..+.++.-++|--||.|+....
T Consensus 17 t~~~~~L~~i~pen~v~inp~dA~~-----~Gi~~Gd~V~v~s~~G~i~~~a~v~~~i~pg~V~i~~G 79 (143)
T cd02780 17 SANAPWLKEIKPENPVWINPEDAAK-----LGIKTGDRVRVVTPGGSVVGKAKVTEGVRPGVVAIEHG 79 (143)
T ss_pred CCCCHHHHHHCCCCEEEECHHHHHH-----CCCCCCCEEEEECCCEEEEEEEEECCCCCCCEEEECCC
T ss_conf 3205999975899859999999998-----69998999999879857999999889838898995277
No 122
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=31.63 E-value=20 Score=16.94 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCCCEEEECCC--CC-CCCCCHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 313770430461--34-466631567766544201344650201
Q gi|254780583|r 129 LCVGDTLFSLGC--GR-IFEDSYAEMFESLEKIKSFSDKTHIYF 169 (256)
Q Consensus 129 lFtGDtLF~~g~--Gr-~~~G~~~~l~~Sl~kl~~Lp~~t~i~p 169 (256)
-|-.|...++|+ || ++-.|..+-+..|+++...-++..|=|
T Consensus 275 ~~p~~k~L~aGvVdGRNIWr~dl~~~l~~l~~l~~~~~~l~v~~ 318 (756)
T PRK05222 275 GLPADKVLSAGVIDGRNIWRADLEAALALLEPLAALLDRLWVAP 318 (756)
T ss_pred CCCCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHCCEEECC
T ss_conf 48988589998776743340189999999999986404389768
No 123
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=31.30 E-value=41 Score=14.96 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHC-CCC----CCEEECCCCC
Q ss_conf 567766544201-344----6502016652
Q gi|254780583|r 149 AEMFESLEKIKS-FSD----KTHIYFGHEY 173 (256)
Q Consensus 149 ~~l~~Sl~kl~~-Lp~----~t~i~pGHeY 173 (256)
+.-..+|++... |.+ -..+||||+-
T Consensus 69 ~tTi~Al~~al~lL~~gG~i~i~~Y~GH~g 98 (140)
T pfam06962 69 DTTLEAIKKLLELLKPGGLIILVIYHGHEE 98 (140)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 209999999999636698999999799998
No 124
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=31.30 E-value=12 Score=18.38 Aligned_cols=99 Identities=21% Similarity=0.345 Sum_probs=49.3
Q ss_pred CCEEEECCCCCCC-CCCHHHHHHHHHH-HH---CCCCCCEEECCC---------CCH-HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7704304613446-6631567766544-20---134465020166---------520-4588987750234478999999
Q gi|254780583|r 132 GDTLFSLGCGRIF-EDSYAEMFESLEK-IK---SFSDKTHIYFGH---------EYT-ENNAYFALSCDPHNLELQKYCS 196 (256)
Q Consensus 132 GDtLF~~g~Gr~~-~G~~~~l~~Sl~k-l~---~Lp~~t~i~pGH---------eYt-~~nl~Fa~~~~p~n~~~~~~~~ 196 (256)
=||+|+.|+ +. --++-++...|++ |+ .|=-||+|.+|- -|. ..|.-| .|.-..+.+.+.
T Consensus 183 FDtVFsMGV--LYHrrsP~~hL~~Lk~~L~~gGeLvLETlvi~gd~~~~L~P~~rYA~M~NV~f----iPS~~~L~~Wl~ 256 (315)
T pfam08003 183 FDTVFSMGV--LYHRRSPLDHLLQLKDQLVKGGELVLETLVIEGDENTVLVPGDRYAQMRNVYF----IPSAAALKNWLE 256 (315)
T ss_pred CCEEEEEEE--EECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEE----CCCHHHHHHHHH
T ss_conf 155776544--43268989999999985287978999987765988725678854147987545----478899999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCC
Q ss_conf 9998885789866787899987282246789899997388998
Q gi|254780583|r 197 KVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENA 239 (256)
Q Consensus 197 ~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~~ 239 (256)
.+.=.--+-.-..+||..|.|+| +.|+.. .+..+++..++
T Consensus 257 r~GF~~i~~vd~~~Tt~~EQR~T-~Wm~~~--SL~dfLdP~d~ 296 (315)
T pfam08003 257 KCGFVDVRIVDVSVTTLEEQRRT-EWMENE--SLPDFLDPNDP 296 (315)
T ss_pred HCCCCEEEEEECCCCCHHHHCCC-CCCCCC--CHHHHCCCCCC
T ss_conf 85993278887787983440469-898866--58885499899
No 125
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=31.22 E-value=41 Score=15.01 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH-HHCCCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 55445675226861465431377043046134466631567766544-2013446502016652045889877502
Q gi|254780583|r 111 TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEK-IKSFSDKTHIYFGHEYTENNAYFALSCD 185 (256)
Q Consensus 111 tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~k-l~~Lp~~t~i~pGHeYt~~nl~Fa~~~~ 185 (256)
-+||-||++.+...+ ++.. |++- +++++.+-+.. -....+.+++|||=-.+.+.+-|++...
T Consensus 192 r~GhIPgA~n~p~~~---~~~~--------g~lk--~~~el~~~~~~~gi~~~~~vi~yC~sG~~As~~~~~l~~l 254 (281)
T PRK11493 192 RRGHIPGALNVPWTE---LVRE--------GELK--TTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATL 254 (281)
T ss_pred CCCCCCCCCCCCHHH---HHCC--------CCCC--CHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf 787788977678999---9639--------9818--9999999999759899999999897199999999999986
No 126
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=31.01 E-value=42 Score=14.93 Aligned_cols=28 Identities=7% Similarity=-0.011 Sum_probs=14.1
Q ss_pred EEEEEEECCCEEEEEEEC--CCCEEEEECC
Q ss_conf 453011057626999988--9984999869
Q gi|254780583|r 5 NIAISLYHDNFCILIHNH--KYRLTAAIDA 32 (256)
Q Consensus 5 ~i~ip~~~DNy~YlI~d~--~t~~~viIDp 32 (256)
.+.+..|.|.=.|+-..+ .++.++++-.
T Consensus 25 ~~~~~~F~DGE~~v~i~~~vrg~dV~i~~~ 54 (286)
T PRK00934 25 RVETKKFPDGELYVRVDEELGGEDIVIIST 54 (286)
T ss_pred EEEEEECCCCCEEEEECCCCCCCEEEEEEC
T ss_conf 128898899988998688779986999918
No 127
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=30.99 E-value=42 Score=14.93 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=29.0
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCC
Q ss_conf 499986999899999999859964399985898433000001111000101200012343
Q gi|254780583|r 26 LTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSK 85 (256)
Q Consensus 26 ~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~ 85 (256)
+++.+|+-+.+.+.+++++++..+ +++-=.-+=- .|.....+..+.+++||.....+
T Consensus 41 ~~~~i~~~d~~~i~~~~~~~~idl--viiGPE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~ 97 (99)
T pfam02844 41 KNVNIDITDFEALADFAKEENIDL--VVVGPEAPLV-AGIVDALRAAGIPVFGPSKAAAR 97 (99)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCE--EEECCCHHHH-HHHHHHHHHCCCEEECCCHHHHH
T ss_conf 501458447999999999819749--9989606778-78899998689917992868873
No 128
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=30.68 E-value=38 Score=15.19 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=41.9
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHH-HHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHH-HH-HHHHH
Q ss_conf 37704304613446663156776654-4201344650201665204588987750234478999999-99-98885
Q gi|254780583|r 131 VGDTLFSLGCGRIFEDSYAEMFESLE-KIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCS-KV-KSMRS 203 (256)
Q Consensus 131 tGDtLF~~g~Gr~~~G~~~~l~~Sl~-kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~-~~-~~~~~ 203 (256)
..+.+|..|-.++- ....++...|- -|..+|.. +..-|| -.|.-|.....++|+.|-..++ .| ..+..
T Consensus 181 ~d~~lF~~GSa~l~-p~~~~lL~~ia~~l~~~~n~-I~I~GH---TD~~p~~~~~~~sNWeLSaaRA~~v~r~L~~ 251 (305)
T PRK08944 181 REKGSFPSGSAFLQ-PKFKPLVRKIGELLKDVPGI-ITVSGH---TDNMPISSELYRSNWDLSSARAVAVAHELLK 251 (305)
T ss_pred CCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCE-EEEEEE---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 68767578864248-76899999999999738962-799741---5777665556787489999999999999998
No 129
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=30.58 E-value=43 Score=14.88 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=11.8
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 43137704304613446663156776654
Q gi|254780583|r 128 FLCVGDTLFSLGCGRIFEDSYAEMFESLE 156 (256)
Q Consensus 128 ~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~ 156 (256)
.+=+|+.+++.|+ |-.++..+.+.++
T Consensus 182 ~i~sg~y~WNsGi---Fv~~~~~~l~~~~ 207 (274)
T cd02509 182 YLESGNYLWNSGI---FLFRAKTFLEELK 207 (274)
T ss_pred HHHCCCCEEECHH---HHHHHHHHHHHHH
T ss_conf 9875990330023---2200999999999
No 130
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.54 E-value=41 Score=14.97 Aligned_cols=15 Identities=0% Similarity=-0.046 Sum_probs=9.4
Q ss_pred EEECCCCEEEEECCC
Q ss_conf 998899849998699
Q gi|254780583|r 19 IHNHKYRLTAAIDAP 33 (256)
Q Consensus 19 I~d~~t~~~viIDpg 33 (256)
+.++.+...++..|.
T Consensus 23 l~~~~getlvllgps 37 (242)
T COG4161 23 LDCPEGETLVLLGPS 37 (242)
T ss_pred ECCCCCCEEEEECCC
T ss_conf 226889779997788
No 131
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=30.50 E-value=43 Score=14.88 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=14.1
Q ss_pred EEEEEECCCEEEEEEEC--CCCEEEEEC
Q ss_conf 53011057626999988--998499986
Q gi|254780583|r 6 IAISLYHDNFCILIHNH--KYRLTAAID 31 (256)
Q Consensus 6 i~ip~~~DNy~YlI~d~--~t~~~viID 31 (256)
+.+..|.|.=.|+-..+ .++.+++|-
T Consensus 29 ~~~~~F~DGE~~v~i~e~vrg~dV~iiq 56 (301)
T PRK07199 29 ITLHRFPDGESYVRLDSGVAGRTVVLVC 56 (301)
T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEEC
T ss_conf 2899879998899617987798389988
No 132
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=30.24 E-value=43 Score=14.85 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCC----CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHC-C-CCCCEEECCCC
Q ss_conf 1111222331025544567522686146----5431377043046134466631567766544201-3-44650201665
Q gi|254780583|r 99 FDFGSHPIKIIATPGHTIGHICYHFMND----HFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKS-F-SDKTHIYFGHE 172 (256)
Q Consensus 99 i~ig~~~~~vi~tPGHT~g~i~~~~~~~----~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~-L-p~~t~i~pGHe 172 (256)
++--++...++..+|-|.-++-+.-.++ .+.+.|=.+ +.+++-+=++++.. + +.|++|.+|-
T Consensus 71 l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~i-----------s~~~~~~~l~~~~~~l~~~d~VvlsGS- 138 (310)
T COG1105 71 LKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEI-----------SEAELEQFLEQLKALLESDDIVVLSGS- 138 (310)
T ss_pred HHHCCCCCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCC-----------CHHHHHHHHHHHHHHCCCCCEEEEECC-
T ss_conf 87638983079905887356999717888468704889988-----------999999999999975664889999088-
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC----CCHHHHHHHCCCCCC-CCHHHHHHCCCCCCCHHHHHHH
Q ss_conf 20458898775023447899999999988857898667----878999872822467-8989999738899898999999
Q gi|254780583|r 173 YTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNP----STISLEKKVNPFLRI-ENTSLRKNLNMENASNLAVFTE 247 (256)
Q Consensus 173 Yt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvP----stl~~Ek~~NPflr~-~~~~~~~~~~~~~~~~~~~f~~ 247 (256)
.|.+-....|..+++..++.+...+- -.|..=.+.+|+|-= +..++..-++.+..+..+.-.+
T Consensus 139 ------------lP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~~~~ 206 (310)
T COG1105 139 ------------LPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKA 206 (310)
T ss_pred ------------CCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCHHHHHHH
T ss_conf ------------99999979999999999865983999798599999870799389458899999968988974889999
Q ss_pred HHHH
Q ss_conf 9986
Q gi|254780583|r 248 LRIR 251 (256)
Q Consensus 248 lR~~ 251 (256)
.|++
T Consensus 207 a~~l 210 (310)
T COG1105 207 AREL 210 (310)
T ss_pred HHHH
T ss_conf 9999
No 133
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=29.97 E-value=25 Score=16.43 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=22.3
Q ss_pred CCHHHHHHHH-HHHHCCCCCCEEECCCCC
Q ss_conf 6315677665-442013446502016652
Q gi|254780583|r 146 DSYAEMFESL-EKIKSFSDKTHIYFGHEY 173 (256)
Q Consensus 146 G~~~~l~~Sl-~kl~~Lp~~t~i~pGHeY 173 (256)
|...|+.+|+ +|-....|.-.+.|||--
T Consensus 231 ~~~GDL~eS~~KR~~~VKDSG~llPGHGG 259 (285)
T PRK11624 231 SVLGDLTESMFKREAGIKDSGHLIPGHGG 259 (285)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99508999999775799978887887552
No 134
>PRK04117 consensus
Probab=29.78 E-value=44 Score=14.80 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=15.2
Q ss_pred EEEEEEECCCEEEEEEEC--CCCEEEEECC
Q ss_conf 453011057626999988--9984999869
Q gi|254780583|r 5 NIAISLYHDNFCILIHNH--KYRLTAAIDA 32 (256)
Q Consensus 5 ~i~ip~~~DNy~YlI~d~--~t~~~viIDp 32 (256)
.+.+..|.|.=.|+-..+ .++.+++|-+
T Consensus 29 ~~~~~~FpDGE~~v~i~~~vrg~dV~ivqs 58 (309)
T PRK04117 29 KATIKRFSDGEINVQISESVRGKDVFIIQP 58 (309)
T ss_pred CEEEEECCCCCEEEEECCCCCCCCEEEECC
T ss_conf 218898899988886688778998899917
No 135
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=29.03 E-value=45 Score=14.71 Aligned_cols=23 Identities=4% Similarity=0.218 Sum_probs=10.5
Q ss_pred CCCCC---CCCCCHHHHHHHHHHHHC
Q ss_conf 46134---466631567766544201
Q gi|254780583|r 138 LGCGR---IFEDSYAEMFESLEKIKS 160 (256)
Q Consensus 138 ~g~Gr---~~~G~~~~l~~Sl~kl~~ 160 (256)
|++|+ +..++.-++|+.+..+..
T Consensus 233 GS~~~Al~L~~~~gl~i~~~~~~ll~ 258 (352)
T PRK09112 233 GSVRKALLLLNYGGLEIIDTVDQLLA 258 (352)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99889998744877999999999980
No 136
>COG1360 MotB Flagellar motor protein [Cell motility and secretion]
Probab=28.48 E-value=42 Score=14.89 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=43.6
Q ss_pred CCEEEECCC--CCCCCCCEEEECCCCCCCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 522686146--54313770430461344666315677665-442013446502016652045889877502344789999
Q gi|254780583|r 118 HICYHFMND--HFLCVGDTLFSLGCGRIFEDSYAEMFESL-EKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKY 194 (256)
Q Consensus 118 ~i~~~~~~~--~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl-~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~ 194 (256)
.+.+-...+ .+.++||.+|..|--.+-. -...++.-+ ..|..++...+..-|| -.|..+..+ .|+|+.|-..
T Consensus 116 ~~~v~~~~~gl~i~i~~~~~F~~gsa~~~~-~~~~~l~~ia~~l~~~~~~~I~I~GH---TDn~p~~~~-~~sNWeLS~a 190 (244)
T COG1360 116 QLGVDDVEEGLVISISDSLMFASGSAVVQP-EFRDLLLKIAKLLADIPNGNIRIEGH---TDNVPIKGS-FYSNWELSAA 190 (244)
T ss_pred CCEEEECCCCEEEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCEEEEEEC---CCCCCCCCC-CCCHHHHHHH
T ss_conf 655887488628996244464677521276-67999999999987267982899865---899766778-8850888999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780583|r 195 CSK 197 (256)
Q Consensus 195 ~~~ 197 (256)
++.
T Consensus 191 RA~ 193 (244)
T COG1360 191 RAQ 193 (244)
T ss_pred HHH
T ss_conf 999
No 137
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.31 E-value=27 Score=16.19 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=30.8
Q ss_pred CEEEECCCCCCCCCCCCEEEEEHHCCCC----CCCCCCCCCCCCCCCCCCEE
Q ss_conf 1012000123432332203310100111----12223310255445675226
Q gi|254780583|r 74 CTIFGPLEESSKIPGIDHGLSDGDTFDF----GSHPIKIIATPGHTIGHICY 121 (256)
Q Consensus 74 ~~v~~~~~~~~~i~~~~~~l~dgd~i~i----g~~~~~vi~tPGHT~g~i~~ 121 (256)
.+|+.+..++.+ ..++|||.+.+ |...+++.-++.=-||-++.
T Consensus 33 ~~v~i~p~DA~~-----~GI~dGd~V~V~n~rG~v~~~a~vt~~v~pGvV~i 79 (129)
T cd02793 33 EPIRINPADAAA-----RGIADGDIVRVFNDRGACLAGAVVTDGIMPGVVQL 79 (129)
T ss_pred CEEEECHHHHHH-----CCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEE
T ss_conf 759999999988-----59989899999888956999999899858997994
No 138
>PRK05434 phosphoglyceromutase; Provisional
Probab=27.72 E-value=31 Score=15.80 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=29.1
Q ss_pred HHHHHHHCCCC--EEEEEE---CCCCHHHHCHHHHHHHHCCC-EEEECCC
Q ss_conf 99999985996--439998---58984330000011110001-0120001
Q gi|254780583|r 38 ISKMLREKGWF--LTHIFN---THHHIDHTRANLNLKKFFNC-TIFGPLE 81 (256)
Q Consensus 38 i~~~l~~~~~~--i~~Il~---TH~H~DHigg~~~l~~~~~~-~v~~~~~ 81 (256)
.++.+++.+-+ +-.++- -|.|.||.-++..+.+..++ +||.|.-
T Consensus 101 ~i~~~k~~~~~lHl~GLlSdGGVHSH~~Hl~al~~~a~~~gv~~v~vH~f 150 (511)
T PRK05434 101 AIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAAKEGVKKVYLHAF 150 (511)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999973981699985238843133789999999999708884899985
No 139
>TIGR02998 RraA_entero regulator of ribonuclease activity A; InterPro: IPR014339 This entry includes a number of closely related sequences from the gammaproteobacteria. The Escherichia coli member of this family, RraA, has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=27.66 E-value=27 Score=16.13 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=21.3
Q ss_pred EEEEEECCC--EEEEEEECCCCEEEEECCCC
Q ss_conf 530110576--26999988998499986999
Q gi|254780583|r 6 IAISLYHDN--FCILIHNHKYRLTAAIDAPD 34 (256)
Q Consensus 6 i~ip~~~DN--y~YlI~d~~t~~~viIDpgd 34 (256)
++|+||++| ..=|+....++.+++||-|=
T Consensus 37 ~TvKCFE~ngLi~ell~~~G~g~VL~iDGGG 67 (161)
T TIGR02998 37 VTVKCFEDNGLIAELLEQNGTGRVLLIDGGG 67 (161)
T ss_pred EEEEEECCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9998606714789999725893389996895
No 140
>pfam03568 Peptidase_C50 Peptidase family C50.
Probab=27.46 E-value=43 Score=14.84 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=4.1
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998599
Q gi|254780583|r 38 ISKMLREKGW 47 (256)
Q Consensus 38 i~~~l~~~~~ 47 (256)
+.+.+++.+.
T Consensus 48 f~~Ii~~~~~ 57 (339)
T pfam03568 48 FRRIIEEDNE 57 (339)
T ss_pred HHHHHHHCHH
T ss_conf 9999984422
No 141
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.43 E-value=48 Score=14.54 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=15.7
Q ss_pred ECCCCEEEEECCC-CHHHHHHHHHHCCCC
Q ss_conf 8899849998699-989999999985996
Q gi|254780583|r 21 NHKYRLTAAIDAP-DTYIISKMLREKGWF 48 (256)
Q Consensus 21 d~~t~~~viIDpg-d~~~i~~~l~~~~~~ 48 (256)
|.. +..+.|.|| -...+.+++++.|+.
T Consensus 116 d~~-~~~v~VeaGv~~~~l~~~l~~~Gl~ 143 (499)
T PRK11230 116 DPV-GRRARVQPGVRNLAISQAAAPHGLY 143 (499)
T ss_pred ECC-CCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 268-9979994581079999989866985
No 142
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=27.29 E-value=48 Score=14.52 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH--HHCCCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 5445675226861465431377043046134466631567766544--201344650201665204588987750
Q gi|254780583|r 112 PGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEK--IKSFSDKTHIYFGHEYTENNAYFALSC 184 (256)
Q Consensus 112 PGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~k--l~~Lp~~t~i~pGHeYt~~nl~Fa~~~ 184 (256)
.||-||++++-... +.-.+.+|. ..+....+.. =.+..+++++|||---+.+..-||+..
T Consensus 195 ~GHIPGAiNipw~~---~~~~~~~~~----------~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~ 256 (285)
T COG2897 195 AGHIPGAINIPWTD---LVDDGGLFK----------SPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAE 256 (285)
T ss_pred CCCCCCCCCCCHHH---HHCCCCCCC----------CHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 87888875767899---726787649----------699999999861899888889983896369999999998
No 143
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.25 E-value=49 Score=14.52 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=12.8
Q ss_pred CCCCEEEEECCCC--HHHHHHHHHHCC
Q ss_conf 8998499986999--899999999859
Q gi|254780583|r 22 HKYRLTAAIDAPD--TYIISKMLREKG 46 (256)
Q Consensus 22 ~~t~~~viIDpgd--~~~i~~~l~~~~ 46 (256)
+++.-.++|-|.- -..++..+.+.+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 578069988898867888999987541
No 144
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=27.12 E-value=22 Score=16.78 Aligned_cols=18 Identities=33% Similarity=0.731 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 011112223310255445
Q gi|254780583|r 98 TFDFGSHPIKIIATPGHT 115 (256)
Q Consensus 98 ~i~ig~~~~~vi~tPGHT 115 (256)
.+.+.+.++.++.||||.
T Consensus 58 ~~~w~~~~inliDTPG~~ 75 (268)
T cd04170 58 PLEWKGHKINLIDTPGYA 75 (268)
T ss_pred EEEECCEEEEEEECCCCH
T ss_conf 888899799998698975
No 145
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=27.08 E-value=42 Score=14.89 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCCE---EEEEECCCCHHHHCHHHHHHHHCCCE-----EEECCCCCCCCCCCCEEEEEHHCCCCCCCCCCC
Q ss_conf 9999999859964---39998589843300000111100010-----120001234323322033101001111222331
Q gi|254780583|r 37 IISKMLREKGWFL---THIFNTHHHIDHTRANLNLKKFFNCT-----IFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKI 108 (256)
Q Consensus 37 ~i~~~l~~~~~~i---~~Il~TH~H~DHigg~~~l~~~~~~~-----v~~~~~~~~~i~~~~~~l~dgd~i~ig~~~~~v 108 (256)
.+.+.+++.|++. .+|- |-++.-+.-| +++++. +-.+......+.. +.-.+-..|++|+-.-++
T Consensus 184 ~~~~al~~ag~~~~di~aig-tTGyGr~~ig-----~~~~adl~~eE~tv~skgA~yla~--~~~g~aTVIDIGGQDsKv 255 (404)
T TIGR03286 184 AVERALEEAGVSLEDVEAIG-TTGYGRFTIG-----EHFGADLIQEELTVNSKGAVYLAD--KQEGPATVIDIGGMDNKA 255 (404)
T ss_pred HHHHHHHHCCCCHHHHHHHC-CCCCCHHHHH-----HHCCCCCEEEEEEEECCCCEECCC--CCCCCCEEEEECCCCCEE
T ss_conf 99999997397577653214-6662154665-----643752004778885041011055--567896699976863169
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 02554456752268614654313770430461344666315677665442
Q gi|254780583|r 109 IATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI 158 (256)
Q Consensus 109 i~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl 158 (256)
|..- .|.+.=+..+++. ++|+|||.|-.+..|--+|+.|
T Consensus 256 I~l~---dGiv~dF~MNdkC--------AAGTGRFLE~mA~rLgI~IeEl 294 (404)
T TIGR03286 256 ISVW---DGIPDNFTMGGIC--------AGASGRFLEMTAKRLGVDITEL 294 (404)
T ss_pred EEEC---CCCEEECCCCCCC--------CCCCCHHHHHHHHHCCCCHHHH
T ss_conf 9971---7945403117966--------6647659999998729989999
No 146
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase; InterPro: IPR010077 This entry describes a family of large proteins of herpes virus. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). The protein shows homology to eukaryotic FGAM-synthase. ; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0005198 structural molecule activity, 0019033 viral tegument.
Probab=27.05 E-value=45 Score=14.74 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=82.6
Q ss_pred EEEEECC--CC----HHHHHHHHHHCCCC-EEEEEECCC-CHHHHCHH-----------HHHHHHCCCEEEECCCCCCCC
Q ss_conf 4999869--99----89999999985996-439998589-84330000-----------011110001012000123432
Q gi|254780583|r 26 LTAAIDA--PD----TYIISKMLREKGWF-LTHIFNTHH-HIDHTRAN-----------LNLKKFFNCTIFGPLEESSKI 86 (256)
Q Consensus 26 ~~viIDp--gd----~~~i~~~l~~~~~~-i~~Il~TH~-H~DHigg~-----------~~l~~~~~~~v~~~~~~~~~i 86 (256)
--+-+|| |- +|.+++..-.-..+ +..|++|=. +|+-.... +++++..|+......+....-
T Consensus 682 ~kv~~D~~~G~~yai~EALlNL~~sP~~~Gl~~~~iT~svtw~~~~~~~~~L~~~l~~ck~FC~~LGV~~~~~~A~~~~~ 761 (1313)
T TIGR01739 682 YKVQLDPKRGATYAITEALLNLSLSPVLTGLEDVIITLSVTWSPEDHVYSLLKEALRACKDFCEELGVSFTVTSAASSPT 761 (1313)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 00242135668999999999987453003624247988885484100489999999999999974991698702578888
Q ss_pred ---CCCCE-EEEEHHCCCCCC----------CCCCCCCCCC-CCCCCCEEEECCCCCCCCCCEEE----ECCCC--CCCC
Q ss_conf ---33220-331010011112----------2233102554-45675226861465431377043----04613--4466
Q gi|254780583|r 87 ---PGIDH-GLSDGDTFDFGS----------HPIKIIATPG-HTIGHICYHFMNDHFLCVGDTLF----SLGCG--RIFE 145 (256)
Q Consensus 87 ---~~~~~-~l~dgd~i~ig~----------~~~~vi~tPG-HT~g~i~~~~~~~~~lFtGDtLF----~~g~G--r~~~ 145 (256)
..... .-++.+.+.+.. ....-.-||= -+.||..+|+.-++-.-.+-++| ...+| ++..
T Consensus 762 ~~~~~~~~~~~~~~~vl~~~~IVfsa~~~~~~~~~~~iTPdlk~~Gs~L~~l~~~~~~~laGSif~~i~~~~~~~~~~~~ 841 (1313)
T TIGR01739 762 QSSRSAPTTIQRESKVLTFNSIVFSASAPVKLGSAKKITPDLKKHGSHLIWLSIHQKLTLAGSIFEQILGLSATIHRLPE 841 (1313)
T ss_pred CCCCCCCCCCCCCCEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88788885788653243012089999874136666645755447888899994289720176799986210357765655
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 631567766544201344650201665204588987750234478999999999888578
Q gi|254780583|r 146 DSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQN 205 (256)
Q Consensus 146 G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~ 205 (256)
=++..|.+-+.-|..|-.+..|.+|||= .+-.+-..+.|-.-.-.++
T Consensus 842 ~~~~~l~~ll~~~~~L~~~~~I~SgHDv-------------SDGGL~ac~~EMAlaG~kg 888 (1313)
T TIGR01739 842 LSPESLKKLLKALQELVKEGVIVSGHDV-------------SDGGLVACVAEMALAGGKG 888 (1313)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEE-------------CCHHHHHHHHHHHHCCCCE
T ss_conf 6889999999999877656735887543-------------6136899999999638964
No 147
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=26.92 E-value=49 Score=14.48 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEC----CCC-------CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 1112223310255445675226861----465-------43137704304613446663156776654420134465020
Q gi|254780583|r 100 DFGSHPIKIIATPGHTIGHICYHFM----NDH-------FLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIY 168 (256)
Q Consensus 100 ~ig~~~~~vi~tPGHT~g~i~~~~~----~~~-------~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~ 168 (256)
.+|.+++.++...=+-..|+.+... +++ ..++||.|-+..|+. -.++.++|++|..-..-.+||
T Consensus 218 ~~G~F~l~~y~d~~d~~eHlALvkGdi~~~~~vLVRVHs~~~t~Dvlgs~~~d~-----g~qL~~Al~~I~~eG~GVlVy 292 (400)
T PRK09311 218 EHGEFRAVGYRDILDGVEHLALVKGDISPGEEVLVRVHSECLTGDVLGSRRCDC-----GWQLDAAMAAIAEEGRGVVVY 292 (400)
T ss_pred CCCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEECCCCHHHHCCCCCCC-----CHHHHHHHHHHHHCCCEEEEE
T ss_conf 675379999732788845799994786788962799973365334433889997-----347999999998739869999
Q ss_pred CCCCCH
Q ss_conf 166520
Q gi|254780583|r 169 FGHEYT 174 (256)
Q Consensus 169 pGHeYt 174 (256)
=.||-.
T Consensus 293 Lrqe~r 298 (400)
T PRK09311 293 LRHEGR 298 (400)
T ss_pred ECCCCC
T ss_conf 468884
No 148
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=26.78 E-value=18 Score=17.23 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=50.8
Q ss_pred CHHHHHHH----HHHCCCCEEEEEECCCCHHHHCHHHHHHHH---C--CCEEE--ECCCCCC------CC-------CCC
Q ss_conf 98999999----998599643999858984330000011110---0--01012--0001234------32-------332
Q gi|254780583|r 34 DTYIISKM----LREKGWFLTHIFNTHHHIDHTRANLNLKKF---F--NCTIF--GPLEESS------KI-------PGI 89 (256)
Q Consensus 34 d~~~i~~~----l~~~~~~i~~Il~TH~H~DHigg~~~l~~~---~--~~~v~--~~~~~~~------~i-------~~~ 89 (256)
....+.++ +++.|+++..|.++-.+-.. |..+|.+. + +-.|| |-.+... .+ ..+
T Consensus 116 ~~~~~~~wv~~~~~~~gl~~~dV~lvSak~g~--gv~~L~~~i~~~~~~~dvyvVG~tNvGKSTLiN~ll~~~~~~~~~i 193 (367)
T PRK13796 116 KKNKVKNWLRQEAKELGLRPVDVVLISAQKGQ--GIDELLDAIEKYREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVI 193 (367)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC--CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 87899999999999759985528999465788--9999999999863798589991575758999999998716787731
Q ss_pred CEEEEEHHCCCCC----CCCCCCCCCCC-CCCCCCEEEECCCC---------------CCCCCCEEEECCCCCC
Q ss_conf 2033101001111----22233102554-45675226861465---------------4313770430461344
Q gi|254780583|r 90 DHGLSDGDTFDFG----SHPIKIIATPG-HTIGHICYHFMNDH---------------FLCVGDTLFSLGCGRI 143 (256)
Q Consensus 90 ~~~l~dgd~i~ig----~~~~~vi~tPG-HT~g~i~~~~~~~~---------------~lFtGDtLF~~g~Gr~ 143 (256)
+..--.|.++.+- +-...++.||| ..++++.=++..+. .|-.|-|||.||.+|+
T Consensus 194 T~S~~PGTTL~~i~ipl~~~~~l~DTPGi~~~~q~~~~L~~~~lk~i~P~k~i~p~t~~l~~gqslfigGL~Ri 267 (367)
T PRK13796 194 TTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKEIKPKTYQLNEEQTLFLGGLARF 267 (367)
T ss_pred EECCCCCCCCCCEEEECCCCCEEECCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEEEE
T ss_conf 34489986303178723898567558886674465430799897630677533660799679858998008999
No 149
>pfam03536 VRP3 Salmonella virulence-associated 28kDa protein.
Probab=26.32 E-value=33 Score=15.63 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=42.3
Q ss_pred CHHHHHHHHH-HHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 3156776654-420134465020166520458898775023447899999999988857898667878999872822467
Q gi|254780583|r 147 SYAEMFESLE-KIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRI 225 (256)
Q Consensus 147 ~~~~l~~Sl~-kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~ 225 (256)
...+|.++|+ +|..- -|-||+ |- +..|-|.++....|+++.+..|..+ +.-..+.+.-||+|+
T Consensus 152 k~r~fi~~iE~~L~~~----gi~pg~-~P------~SDV~p~~W~y~SYRNElRS~R~G~-----~~Q~~~L~~EPFf~L 215 (218)
T pfam03536 152 KTRQFIECLESRLSES----GIAPGQ-YP------ESDVHPENWKYVSYRNELRSGRDGG-----EMQEQALREEPFYRL 215 (218)
T ss_pred HHHHHHHHHHHHHHHC----CCCCCC-CC------CCCCCCCCCCHHHHHHHHHCCCCCC-----HHHHHHHHHCCHHHH
T ss_conf 7999999999999873----788898-98------5556834433100233540355662-----688888763718886
No 150
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=26.15 E-value=51 Score=14.39 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=8.8
Q ss_pred HHHHHHHHHCCCCCCEEECCCC
Q ss_conf 7766544201344650201665
Q gi|254780583|r 151 MFESLEKIKSFSDKTHIYFGHE 172 (256)
Q Consensus 151 l~~Sl~kl~~Lp~~t~i~pGHe 172 (256)
+++-|+++..--.-|+|+-.||
T Consensus 179 il~ll~~l~~~~g~tii~vTHD 200 (254)
T PRK10418 179 ILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred HHHHHHHHHHHHCCEEEEEECC
T ss_conf 9999999999709979999699
No 151
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=26.09 E-value=40 Score=15.03 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=8.1
Q ss_pred EEECCCCHHHHCHH
Q ss_conf 99858984330000
Q gi|254780583|r 52 IFNTHHHIDHTRAN 65 (256)
Q Consensus 52 Il~TH~H~DHigg~ 65 (256)
||-||+ |||=-|-
T Consensus 530 VL~THg-WDHD~GY 542 (772)
T TIGR00993 530 VLDTHG-WDHDCGY 542 (772)
T ss_pred CHHCCC-CCCCCCC
T ss_conf 110377-5535676
No 152
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=26.08 E-value=51 Score=14.38 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=16.0
Q ss_pred EEECCC-CHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 998699-9899999999859964399985
Q gi|254780583|r 28 AAIDAP-DTYIISKMLREKGWFLTHIFNT 55 (256)
Q Consensus 28 viIDpg-d~~~i~~~l~~~~~~i~~Il~T 55 (256)
...+|| ..-.+--.+.+.|.+...+-..
T Consensus 33 ~~~~pGGKG~NvA~al~~LG~~~~~ig~v 61 (309)
T PRK10294 33 PVFEPGGGGINVARAIAHLGGSATAIFPA 61 (309)
T ss_pred CEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 35338862899999999869986999991
No 153
>KOG2499 consensus
Probab=26.07 E-value=51 Score=14.38 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=45.1
Q ss_pred HCCCCCCCC-CCCC---CCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCC-----C----CHHHHHHHHHHH-----
Q ss_conf 001111222-3310---255445675226861465431377043046134466-----6----315677665442-----
Q gi|254780583|r 97 DTFDFGSHP-IKII---ATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE-----D----SYAEMFESLEKI----- 158 (256)
Q Consensus 97 d~i~ig~~~-~~vi---~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~-----G----~~~~l~~Sl~kl----- 158 (256)
+.++.+.++ ++|+ .+||||.. |-+..+ | |.--|++.++ | +...||+-|..+
T Consensus 254 evV~yarlRGIRVlpEfD~PgHt~s----Wg~g~~-----~--fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~ 322 (542)
T KOG2499 254 EVVEYARLRGIRVLPEFDTPGHTGS----WGPGYP-----D--FLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVS 322 (542)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCC----CCCCCC-----C--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999988626366321468865455----457887-----5--4578633456678876778775138999999999999
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 01344650201665204588987750234478999999
Q gi|254780583|r 159 KSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCS 196 (256)
Q Consensus 159 ~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~ 196 (256)
..+|++++=.=|-|- ...+-.+|+.+++++.
T Consensus 323 evFp~~~~HlGGDEV-------~~~CW~s~~~Iq~fM~ 353 (542)
T KOG2499 323 EVFPDEFFHLGGDEV-------STPCWKSNPEIQDFMR 353 (542)
T ss_pred HHCCHHHEECCCCEE-------ECCCCCCCHHHHHHHH
T ss_conf 868697724578534-------1212059847999997
No 154
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=25.78 E-value=16 Score=17.59 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=41.2
Q ss_pred EHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEC-----------CCCCC--CCCCHHHHHHHHH-----
Q ss_conf 01001111222331025544567522686146543137704304-----------61344--6663156776654-----
Q gi|254780583|r 95 DGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSL-----------GCGRI--FEDSYAEMFESLE----- 156 (256)
Q Consensus 95 dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~-----------g~Gr~--~~G~~~~l~~Sl~----- 156 (256)
.|.++-|-+-.|.++| +||+.|+-+ .+.| ||.|-+| |=+|. .|.+-...+.||+
T Consensus 9 ~g~kvVFTNGCFDiLH-----~GHV~YL~~-Ar~L--GD~LvVGvNSD~SV~RLKG~~RPi~~e~~Ra~vLaaL~~VD~V 80 (144)
T TIGR02199 9 RGKKVVFTNGCFDILH-----AGHVSYLQQ-ARAL--GDRLVVGVNSDASVKRLKGETRPINSEEDRAEVLAALSSVDYV 80 (144)
T ss_pred CCCCEEECCCCCCCCC-----CCHHHHHHH-HHHH--CCEEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 7897785177310102-----113768999-9971--9866898617045530576898915776789998447850037
Q ss_pred ----------HHHCCCCCCEEECCCCCHHHHHH
Q ss_conf ----------42013446502016652045889
Q gi|254780583|r 157 ----------KIKSFSDKTHIYFGHEYTENNAY 179 (256)
Q Consensus 157 ----------kl~~Lp~~t~i~pGHeYt~~nl~ 179 (256)
-|..+-||.+| =|=||+...+-
T Consensus 81 V~F~EDTP~~LI~~~~PdilV-KGGDY~~~~~v 112 (144)
T TIGR02199 81 VIFDEDTPEELIEELKPDILV-KGGDYKLEELV 112 (144)
T ss_pred EECCCCCHHHHHHHHCCCEEE-ECCCCCCCCCC
T ss_conf 863898968999862962785-04435855442
No 155
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.57 E-value=27 Score=16.18 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=39.8
Q ss_pred HCHHHHHHHH-CCCEEEECCCCCCCCCCCCEEEEEHHCCCC----CCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 0000011110-001012000123432332203310100111----1222331025544567522686
Q gi|254780583|r 62 TRANLNLKKF-FNCTIFGPLEESSKIPGIDHGLSDGDTFDF----GSHPIKIIATPGHTIGHICYHF 123 (256)
Q Consensus 62 igg~~~l~~~-~~~~v~~~~~~~~~i~~~~~~l~dgd~i~i----g~~~~~vi~tPGHT~g~i~~~~ 123 (256)
+..++.|.+. +...|+.+.++..+ ..++|||.+.+ |...+++.-++|--||.|....
T Consensus 17 t~n~p~L~~~~~~~~v~inp~dA~~-----~Gi~dGd~V~v~s~~G~~~~~a~vt~~i~pg~v~~~~ 78 (123)
T cd02778 17 TANNPLLHELTPENTLWINPETAAR-----LGIKDGDRVEVSSARGKVTGKARLTEGIRPDTVFMPH 78 (123)
T ss_pred CCCHHHHHHHCCCCEEEECHHHHHH-----CCCCCCCEEEEECCCEEEEEEEEECCCCCCCEEEECC
T ss_conf 2886999864899889999999998-----4999999999988996899999989980799699745
No 156
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.28 E-value=53 Score=14.29 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=18.5
Q ss_pred EEEEEEECCCCEEEE-ECCCCHHHHHHHHHHCCCCE
Q ss_conf 269999889984999-86999899999999859964
Q gi|254780583|r 15 FCILIHNHKYRLTAA-IDAPDTYIISKMLREKGWFL 49 (256)
Q Consensus 15 y~YlI~d~~t~~~vi-IDpgd~~~i~~~l~~~~~~i 49 (256)
|+|......++.+++ +-.-+.++.++.|++.|+++
T Consensus 29 Y~Yaf~~~~~~~a~lI~r~~d~e~a~~~L~~~g~~~ 64 (65)
T cd04882 29 YMYAFVEKKGGKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred EEEEEECCCCCEEEEEEEECCHHHHHHHHHHCCCEE
T ss_conf 999994378976899998199999999999867678
No 157
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=25.15 E-value=52 Score=14.34 Aligned_cols=27 Identities=11% Similarity=-0.059 Sum_probs=13.9
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 4201344650201665204588987750
Q gi|254780583|r 157 KIKSFSDKTHIYFGHEYTENNAYFALSC 184 (256)
Q Consensus 157 kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~ 184 (256)
++.-.+.+..+||. -....|+.|+...
T Consensus 83 ~Ig~v~Q~~~L~~~-ltV~eni~~~~~~ 109 (218)
T cd03255 83 HIGFVFQSFNLLPD-LTALENVELPLLL 109 (218)
T ss_pred CEEEECCCCCCCCC-CCHHHHHHHHHHH
T ss_conf 47898667521556-4399999999998
No 158
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=24.98 E-value=25 Score=16.40 Aligned_cols=18 Identities=33% Similarity=0.813 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 011112223310255445
Q gi|254780583|r 98 TFDFGSHPIKIIATPGHT 115 (256)
Q Consensus 98 ~i~ig~~~~~vi~tPGHT 115 (256)
.+.+.+.++.++.||||.
T Consensus 65 ~~~w~~~kinliDTPG~~ 82 (267)
T cd04169 65 QFEYRDCVINLLDTPGHE 82 (267)
T ss_pred EEEECCEEEEEEECCCCH
T ss_conf 887899899999796977
No 159
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=24.64 E-value=54 Score=14.21 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 89998728224678
Q gi|254780583|r 213 ISLEKKVNPFLRIE 226 (256)
Q Consensus 213 l~~Ek~~NPflr~~ 226 (256)
..++.+..|.+++.
T Consensus 230 ~~~~i~~~~~~~l~ 243 (290)
T PRK05917 230 YLKEILTLPVLPLE 243 (290)
T ss_pred HHHHHHHCCCCCHH
T ss_conf 89999866356799
No 160
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=24.54 E-value=54 Score=14.20 Aligned_cols=56 Identities=11% Similarity=-0.086 Sum_probs=33.8
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCC
Q ss_conf 49998699989999999985996439998589843300000111100010120001234
Q gi|254780583|r 26 LTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESS 84 (256)
Q Consensus 26 ~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~ 84 (256)
+++.+|+-+.+.+.+++++++..++-| -= ..-=+.|+....+.-+.+|+||.....
T Consensus 49 ~~~~~~~~d~~~i~~fa~~~~IDLvvV--GP-E~PL~~Gi~D~l~~~gi~vFGP~k~aA 104 (485)
T PRK05784 49 EYFIGNPTSPGEVVKAAEEVSPDLVVI--GP-EEPLFAGVADALREEGFPVFGASSKCA 104 (485)
T ss_pred CEECCCCCCHHHHHHHHHHCCCCEEEE--CC-HHHHHHHHHHHHHHCCCCEECCCHHHH
T ss_conf 212048779999999999819999998--97-388761258999737990789688994
No 161
>COG1084 Predicted GTPase [General function prediction only]
Probab=24.23 E-value=31 Score=15.75 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-----CCCCCC-EEE----ECCCCCCCCCCHHHHHH
Q ss_conf 43233220331010011112223310255445675226861465-----431377-043----04613446663156776
Q gi|254780583|r 84 SKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH-----FLCVGD-TLF----SLGCGRIFEDSYAEMFE 153 (256)
Q Consensus 84 ~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~-----~lFtGD-tLF----~~g~Gr~~~G~~~~l~~ 153 (256)
...|..+..+.=| .+..+...++++.|||-=.-.+.=.-+-+. .-+-++ -|| +..||=-.| .-..||+
T Consensus 196 A~YPFTTK~i~vG-hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE-~Q~~L~~ 273 (346)
T COG1084 196 APYPFTTKGIHVG-HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLE-EQISLLE 273 (346)
T ss_pred CCCCCCCCCEEEE-EEECCCCEEEEECCCCCCCCCHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHH-HHHHHHH
T ss_conf 7888533654676-5504870589842886457885773689999999999742858999768500289999-9999999
Q ss_pred HHHHHHCCCCCCEEECC
Q ss_conf 65442013446502016
Q gi|254780583|r 154 SLEKIKSFSDKTHIYFG 170 (256)
Q Consensus 154 Sl~kl~~Lp~~t~i~pG 170 (256)
++..+.. ++=..|+--
T Consensus 274 eIk~~f~-~p~v~V~nK 289 (346)
T COG1084 274 EIKELFK-APIVVVINK 289 (346)
T ss_pred HHHHHCC-CCEEEEEEC
T ss_conf 9998538-876999741
No 162
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein; InterPro: IPR014343 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry represent the ATP-binding protein of a conserved four-gene ABC transporter operon found next to ectoine utilisation operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This entry shows strong sequence similarity to a number of amino acid ABC transporter ATP-binding proteins..
Probab=24.12 E-value=55 Score=14.15 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHCC---CCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 315677665442013---44650201665204588987750
Q gi|254780583|r 147 SYAEMFESLEKIKSF---SDKTHIYFGHEYTENNAYFALSC 184 (256)
Q Consensus 147 ~~~~l~~Sl~kl~~L---p~~t~i~pGHeYt~~nl~Fa~~~ 184 (256)
||+-.-+.|+-|+.| .+=|.+.-.|| +.||..+
T Consensus 182 DP~Lv~EVL~V~r~L~~E~dlTMLlVTH~-----MgFA~~~ 217 (256)
T TIGR03005 182 DPELVGEVLNVIRRLASEHDLTMLLVTHE-----MGFAREF 217 (256)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEHHC-----CHHHHHH
T ss_conf 85789999999997403333200000101-----1133442
No 163
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; InterPro: IPR005995 This 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a metalloenzyme found particularly in eubacteria and higher plants. It is distantly related to archaeal iPGAM (IPR004456 from INTERPRO) and distinct from the unrelated cofactor-dependent PGAM (PIRSF001490 from PIRSF). Activity has been demonstrated for proteins from a variety of organisms, including Pseudomonas syringae pv. tomato , Bacillus subtilis , Bacillus stearothermophilus , maize , castor bean , and Trypanosoma brucei . The structure of the B. stearothermophilus enzyme (PDB:1EJJ) has two domains . Residues 1-76 and 311-511 form the phosphatase domain, containing the active site residue and two metal-binding sites. This domain is similar to alkaline phosphatase (PDB:1ALK) and arylsulphatase (PDB:1AUK), which are members of the SCOP alkaline phosphatase-like superfamily, but there is meagre sequence similarity outside of the metal-binding segments. Residues 77-310 form the phosphotransferase domain, which is poorly conserved (or perhaps unrelated) in the archaeal enzymes.; GO: 0004619 phosphoglycerate mutase activity, 0006007 glucose catabolic process.
Probab=23.45 E-value=44 Score=14.81 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=20.1
Q ss_pred CCCCHHHHCHHHHHHHHCC-CEEEECCC
Q ss_conf 5898433000001111000-10120001
Q gi|254780583|r 55 THHHIDHTRANLNLKKFFN-CTIFGPLE 81 (256)
Q Consensus 55 TH~H~DHigg~~~l~~~~~-~~v~~~~~ 81 (256)
=|.|.||+-|+.++.+.-+ .+||.|.-
T Consensus 127 VHSh~~Hl~AL~~~A~~~G~~k~~lH~f 154 (529)
T TIGR01307 127 VHSHIDHLIALIELAAERGIEKVCLHAF 154 (529)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 0360889999999996689317999876
No 164
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.36 E-value=57 Score=14.05 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=15.3
Q ss_pred CCCCCCEEEECCC-CCCCCCCHH-HHHHHHHHH
Q ss_conf 4313770430461-344666315-677665442
Q gi|254780583|r 128 FLCVGDTLFSLGC-GRIFEDSYA-EMFESLEKI 158 (256)
Q Consensus 128 ~lFtGDtLF~~g~-Gr~~~G~~~-~l~~Sl~kl 158 (256)
++-.||++|..|. |.-.+|+.+ |..+.++.|
T Consensus 6 AV~~g~~i~vSGq~~~~~~gdi~~Qt~~~l~ni 38 (105)
T cd06150 6 AVVHNGTVYLAGQVADDTSADITGQTRQVLAKI 38 (105)
T ss_pred EEEECCEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 399999999947889799989999999999999
No 165
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=23.21 E-value=28 Score=16.05 Aligned_cols=19 Identities=47% Similarity=0.644 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 0111122233102554456
Q gi|254780583|r 98 TFDFGSHPIKIIATPGHTI 116 (256)
Q Consensus 98 ~i~ig~~~~~vi~tPGHT~ 116 (256)
.+.+.+.++.++.||||..
T Consensus 58 ~~~w~~~~inliDTPG~~D 76 (270)
T cd01886 58 TCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred EEEECCEEEEEEECCCCHH
T ss_conf 9998998999986969678
No 166
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=23.07 E-value=27 Score=16.12 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=19.8
Q ss_pred CCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHH-HHHHC
Q ss_conf 752268614654313770430461344666315677665-44201
Q gi|254780583|r 117 GHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESL-EKIKS 160 (256)
Q Consensus 117 g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl-~kl~~ 160 (256)
|.++-.+=..+.|=.||.+.+|.. .|-...|++.. +++..
T Consensus 305 G~vatviVq~GtLk~GD~iV~G~~----~GkVRam~d~~g~~lk~ 345 (610)
T PRK12312 305 GPVATLIVQNGTLKVGDFIVAGST----YGKIRSMEDENGKKLKK 345 (610)
T ss_pred CCEEEEEEECCEEECCCEEEECCC----CCCCCEEECCCCCCCCC
T ss_conf 636899983587815998998986----68621577367861434
No 167
>pfam02543 CmcH_NodU Carbamoyltransferase. This family consists of NodU from Rhizobium and CmcH from Nocardia lactamdurans. NodU a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. CmcH is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity, EC:2.1.3.7 catalysing the reaction: Carbamoyl phosphate + 3-hydroxymethylceph-3-EM-4-carboxylate <= phosphate + 3-carbamoyloxymethylcephem.
Probab=22.86 E-value=58 Score=13.99 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 02344789999999998885789866787899987
Q gi|254780583|r 184 CDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKK 218 (256)
Q Consensus 184 ~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~ 218 (256)
.+|.++.++.+++..++ |+.=.|--||-|.+...
T Consensus 288 adP~~~~~kd~iN~~~k-RE~fRPFAP~vl~e~~~ 321 (360)
T pfam02543 288 ADPRDPEMKDRLNAIVK-REWFRPFAPSVLEERAP 321 (360)
T ss_pred CCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHHHHH
T ss_conf 18997679999860545-57768875015098899
No 168
>pfam01148 CTP_transf_1 Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Probab=22.77 E-value=41 Score=14.97 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCHHHHHHHH-HHHHCCCCCCEEECCCCCH
Q ss_conf 6315677665-4420134465020166520
Q gi|254780583|r 146 DSYAEMFESL-EKIKSFSDKTHIYFGHEYT 174 (256)
Q Consensus 146 G~~~~l~~Sl-~kl~~Lp~~t~i~pGHeYt 174 (256)
|...|+.+|. +|-....|.=.+.|||---
T Consensus 209 ~~~GDL~eS~~KR~~~vKDsg~llPGHGG~ 238 (259)
T pfam01148 209 GQFGDLVESGFKRDFGIKDSGKLIPGHGGI 238 (259)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 986099999998805999777877875407
No 169
>PRK10218 GTP-binding protein; Provisional
Probab=22.77 E-value=30 Score=15.88 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=17.1
Q ss_pred CEEEEECCCC-----HHHHHHHHHHCCCCEEEEEE
Q ss_conf 8499986999-----89999999985996439998
Q gi|254780583|r 25 RLTAAIDAPD-----TYIISKMLREKGWFLTHIFN 54 (256)
Q Consensus 25 ~~~viIDpgd-----~~~i~~~l~~~~~~i~~Il~ 54 (256)
+..++||+.+ ...+...+.+.++.+-.+++
T Consensus 94 GalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvIN 128 (607)
T PRK10218 94 SVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVIN 128 (607)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 48999978878624589999999987997599721
No 170
>pfam01924 HypD Hydrogenase formation hypA family. HypD is involved in hydrogenase formation. It contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into hypD resulted in R. leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas.
Probab=22.63 E-value=59 Score=13.96 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=23.7
Q ss_pred HHHHHHHHHH-----CCCCEEEEEECCCCHHHHCHHHHHHH-------HCCCEEEE
Q ss_conf 8999999998-----59964399985898433000001111-------00010120
Q gi|254780583|r 35 TYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKK-------FFNCTIFG 78 (256)
Q Consensus 35 ~~~i~~~l~~-----~~~~i~~Il~TH~H~DHigg~~~l~~-------~~~~~v~~ 78 (256)
+..+++.+++ ..+++-.|.=||.|.=--.|+..|.- =+||||..
T Consensus 5 ~~~l~~~I~~~~~~~r~~~iMeVCGtHt~aI~r~Gir~LLP~~i~lisGPGCPVCV 60 (355)
T pfam01924 5 AKALAEEIRRLADPGRPIKIMEVCGGHTHAIFRYGIRSLLPENVELIHGPGCPVCV 60 (355)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCHHHHCCCCCEEECCCCCCEEE
T ss_conf 99999999987246998379986886179999835797686887792089597077
No 171
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=22.49 E-value=30 Score=15.90 Aligned_cols=18 Identities=33% Similarity=0.820 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 011112223310255445
Q gi|254780583|r 98 TFDFGSHPIKIIATPGHT 115 (256)
Q Consensus 98 ~i~ig~~~~~vi~tPGHT 115 (256)
.+.+.+.++.++.||||.
T Consensus 58 ~~~~~~~~~n~iDtPG~~ 75 (237)
T cd04168 58 SFQWEDTKVNLIDTPGHM 75 (237)
T ss_pred EEEECCEEEEEEECCCCH
T ss_conf 999899879998898846
No 172
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=22.29 E-value=30 Score=15.88 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 0111122233102554456
Q gi|254780583|r 98 TFDFGSHPIKIIATPGHTI 116 (256)
Q Consensus 98 ~i~ig~~~~~vi~tPGHT~ 116 (256)
.+.+.+..+.++.||||-.
T Consensus 56 ~~~~~~~~i~~iDTPGh~~ 74 (189)
T cd00881 56 TFEWPDRRVNFIDTPGHED 74 (189)
T ss_pred EEEECCEEEEEEECCCCHH
T ss_conf 9998998999996998188
No 173
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=22.22 E-value=60 Score=13.91 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEECC---CCCHHHHHHHHHHC
Q ss_conf 544567522686146543137704304613446663156776654420-13446502016---65204588987750
Q gi|254780583|r 112 PGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIK-SFSDKTHIYFG---HEYTENNAYFALSC 184 (256)
Q Consensus 112 PGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~-~Lp~~t~i~pG---HeYt~~nl~Fa~~~ 184 (256)
.||-||++.+-+.+ +.-.|.-|. ...-+.+++-+-+.++. .....+++||| --.|..-+.|++.+
T Consensus 52 sGHIPGA~~~d~~~---~ld~~~~~~-----~~lp~~~~f~~~~~~lGI~~~~~vVvycg~~~sGvtA~r~ww~l~~ 120 (138)
T cd01445 52 SGHIPGASFFDFEE---CLDEAGFEE-----SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARL 120 (138)
T ss_pred CCCCCCCCCCCHHH---HHCCCCCCC-----CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 67779972258899---617899978-----8888999999999982999898089983898850199999999998
No 174
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=22.20 E-value=60 Score=13.91 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=34.9
Q ss_pred EEE--CCC--CHHHHHHHHHHCCCCEEEEEECCC--CHHHHCHHH-HH---HHHCCCEEEECCC
Q ss_conf 998--699--989999999985996439998589--843300000-11---1100010120001
Q gi|254780583|r 28 AAI--DAP--DTYIISKMLREKGWFLTHIFNTHH--HIDHTRANL-NL---KKFFNCTIFGPLE 81 (256)
Q Consensus 28 viI--Dpg--d~~~i~~~l~~~~~~i~~Il~TH~--H~DHigg~~-~l---~~~~~~~v~~~~~ 81 (256)
+|| ||| |+-.++=.+....+++.+|-.+++ -.+++.-|. .+ ..+.++|||.+..
T Consensus 3 vIiDtD~G~DDa~Al~~al~~~~~~l~git~v~GN~~~~~~~~Na~~vL~~~g~~dIPV~~Ga~ 66 (306)
T cd02649 3 LIIDTDCGGDDAWALLMALASPNVEVLAITCVHGNTNVEQVVKNALRVLEACGRRDIPVYRGAS 66 (306)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 9998999869999999998689985999999479888899999999999980999998865878
No 175
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=21.92 E-value=61 Score=13.87 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=5.5
Q ss_pred CCEEEECCCCCCCCC
Q ss_conf 522686146543137
Q gi|254780583|r 118 HICYHFMNDHFLCVG 132 (256)
Q Consensus 118 ~i~~~~~~~~~lFtG 132 (256)
.|+|.. .+..+|.|
T Consensus 79 ~i~~v~-Q~~~lf~~ 92 (221)
T cd03244 79 RISIIP-QDPVLFSG 92 (221)
T ss_pred HEEEEE-CCCCCCCC
T ss_conf 079993-03523560
No 176
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase; InterPro: IPR010247 In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This entry represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate..
Probab=21.91 E-value=60 Score=13.93 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=60.7
Q ss_pred CC-CCCCCCEEEECCCCCCCCCCEEEECCCCC-----------CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHH
Q ss_conf 54-45675226861465431377043046134-----------4666315677665442013446502016652045889
Q gi|254780583|r 112 PG-HTIGHICYHFMNDHFLCVGDTLFSLGCGR-----------IFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAY 179 (256)
Q Consensus 112 PG-HT~g~i~~~~~~~~~lFtGDtLF~~g~Gr-----------~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~ 179 (256)
|| +|-+ +++. ..|=|+.||..|-+= +|.==+..|-+=|+||+.+-+..++|=.|-
T Consensus 82 pGQ~TT~----L~P~--T~FDG~ply~dG~~P~~~ei~~r~~~~f~PYH~aL~~Ei~RLra~hg~~vLyDaHS------- 148 (269)
T TIGR02017 82 PGQATTG----LCPE--TTFDGEPLYRDGEAPSPAEIDSRLTQYFRPYHAALRAEIERLRAQHGYAVLYDAHS------- 148 (269)
T ss_pred CCCCCCC----CCCC--CCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCC-------
T ss_conf 9766665----6767--56777667644789798899999886242268999999999884358079871642-------
Q ss_pred HHHHCC-------------------CCCHHHHHHHHHHHHHHHCC-------------------CCC-CCCCHHHHHHHC
Q ss_conf 877502-------------------34478999999999888578-------------------986-678789998728
Q gi|254780583|r 180 FALSCD-------------------PHNLELQKYCSKVKSMRSQN-------------------LYT-NPSTISLEKKVN 220 (256)
Q Consensus 180 Fa~~~~-------------------p~n~~~~~~~~~~~~~~~~~-------------------~~t-vPstl~~Ek~~N 220 (256)
.+|+. .+.++|..++..+.+.. +| .|- --=-|..|.+.-
T Consensus 149 -IRS~iP~LFeG~LP~FNlGTn~g~SCdp~L~~~~~~~c~k~-~G~~~V~NGRFKGG~iTRhYG~P~~gvHA~QmELA~~ 226 (269)
T TIGR02017 149 -IRSVIPRLFEGKLPDFNLGTNDGASCDPALADAVEAVCAKA-TGYSHVLNGRFKGGWITRHYGQPQNGVHAVQMELAQR 226 (269)
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf -00268725378888656567988866578999999997521-5542465101238734216878987403888887641
Q ss_pred CCCCC
Q ss_conf 22467
Q gi|254780583|r 221 PFLRI 225 (256)
Q Consensus 221 Pflr~ 225 (256)
=||+.
T Consensus 227 ~Ym~~ 231 (269)
T TIGR02017 227 GYMEE 231 (269)
T ss_pred HHHHC
T ss_conf 23314
No 177
>pfam09412 XendoU Endoribonuclease XendoU. This is a family of endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis. XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini.
Probab=21.84 E-value=57 Score=14.04 Aligned_cols=15 Identities=27% Similarity=0.107 Sum_probs=11.6
Q ss_pred CCHHHHHHHCCCCCC
Q ss_conf 878999872822467
Q gi|254780583|r 211 STISLEKKVNPFLRI 225 (256)
Q Consensus 211 stl~~Ek~~NPflr~ 225 (256)
.|-.++++.|-||+.
T Consensus 80 vt~eE~~E~~~FLd~ 94 (157)
T pfam09412 80 VTPEELAEQNTFLDE 94 (157)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 898999999999999
No 178
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.81 E-value=61 Score=13.86 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHCCCCEEEEEECCC--CHHHHCHHHHHHHHCCCEEEE
Q ss_conf 989999999985996439998589--843300000111100010120
Q gi|254780583|r 34 DTYIISKMLREKGWFLTHIFNTHH--HIDHTRANLNLKKFFNCTIFG 78 (256)
Q Consensus 34 d~~~i~~~l~~~~~~i~~Il~TH~--H~DHigg~~~l~~~~~~~v~~ 78 (256)
|++.+.+.+.+. .++|+..|- +.=......+|.++++.+|+-
T Consensus 111 d~~~ie~aIt~~---tKAIipVhl~G~~~dm~~i~~la~~~~l~vIE 154 (374)
T COG0399 111 DPDLIEAAITPR---TKAIIPVHLAGQPCDMDAIMALAKRHGLPVIE 154 (374)
T ss_pred CHHHHHHHCCCC---CEEEEEEHHCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999999871557---74999851216877989999999873984998
No 179
>pfam10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. Members of this family are found in various bacterial 2,3-bisphosphoglycerate-independent phosphoglycerate mutase enzymes, which catalyse the interconversion of 2-phosphoglycerate and 3-phosphoglycerate in the reaction: [2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate].
Probab=21.27 E-value=51 Score=14.38 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=24.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEECCCCC
Q ss_conf 46134466631567766544201344-6502016652
Q gi|254780583|r 138 LGCGRIFEDSYAEMFESLEKIKSFSD-KTHIYFGHEY 173 (256)
Q Consensus 138 ~g~Gr~~~G~~~~l~~Sl~kl~~Lp~-~t~i~pGHeY 173 (256)
..+||+..-.++++.++|+. .++. +..+|||.+|
T Consensus 75 rrag~i~teea~~L~~~l~~--~~~~~~~~f~~g~~~ 109 (174)
T pfam10143 75 RRAGRISTEEAAELIEALNE--ELGGVEFRFYPGVSY 109 (174)
T ss_pred EECCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCCE
T ss_conf 31799987999999999873--459869999952557
No 180
>TIGR00653 GlnA glutamine synthetase, type I; InterPro: IPR004809 Glutamine synthetase type I (or glutamate-ammonia ligase) has a dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. Escherichia coli, Synechocystis sp. (strain PCC 6803) , Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon S. acidocaldarius differs from that in E. coli in that it is not regulated by adenylation. ; GO: 0004356 glutamate-ammonia ligase activity, 0009399 nitrogen fixation, 0005737 cytoplasm.
Probab=20.87 E-value=46 Score=14.65 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHHCCCCCCCCCHHH
Q ss_conf 998885789866787899
Q gi|254780583|r 198 VKSMRSQNLYTNPSTISL 215 (256)
Q Consensus 198 ~~~~~~~~~~tvPstl~~ 215 (256)
-+++++.|.+++|+||.+
T Consensus 417 peE~~e~GI~~lP~~L~e 434 (486)
T TIGR00653 417 PEELRELGIPQLPGSLEE 434 (486)
T ss_pred HHHHHHCCCCCCHHHHHH
T ss_conf 899973890110567999
No 181
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=20.74 E-value=34 Score=15.50 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=5.4
Q ss_pred CCCCCEEEECCCC
Q ss_conf 3137704304613
Q gi|254780583|r 129 LCVGDTLFSLGCG 141 (256)
Q Consensus 129 lFtGDtLF~~g~G 141 (256)
+=.|+.++....|
T Consensus 322 l~~g~~v~n~r~g 334 (526)
T PRK00741 322 FEKGMKVRHVRTG 334 (526)
T ss_pred ECCCCEEEECCCC
T ss_conf 8579989852579
No 182
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.62 E-value=65 Score=13.70 Aligned_cols=16 Identities=13% Similarity=0.499 Sum_probs=9.7
Q ss_pred CCCCCEEEEEHHCCCC
Q ss_conf 2332203310100111
Q gi|254780583|r 86 IPGIDHGLSDGDTFDF 101 (256)
Q Consensus 86 i~~~~~~l~dgd~i~i 101 (256)
+.+++..+..|+.+-+
T Consensus 21 l~~vsl~i~~Ge~~~i 36 (233)
T cd03258 21 LKDVSLSVPKGEIFGI 36 (233)
T ss_pred EECCEEEECCCCEEEE
T ss_conf 8482889999999999
No 183
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=20.46 E-value=65 Score=13.68 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=28.9
Q ss_pred HHHHHHHCCCCEEEEEECCCCHHHHCHHHH-HHH-HCCCEEEECCCCCC----------CCCC--CCEEEEEHHCC-CCC
Q ss_conf 999999859964399985898433000001-111-00010120001234----------3233--22033101001-111
Q gi|254780583|r 38 ISKMLREKGWFLTHIFNTHHHIDHTRANLN-LKK-FFNCTIFGPLEESS----------KIPG--IDHGLSDGDTF-DFG 102 (256)
Q Consensus 38 i~~~l~~~~~~i~~Il~TH~H~DHigg~~~-l~~-~~~~~v~~~~~~~~----------~i~~--~~~~l~dgd~i-~ig 102 (256)
-++.+++.. +++.|+.==+=.==|+|+.. +++ .|+++|+|=..+.. ++.. ..+.+.||=.+ +-|
T Consensus 139 gLEi~ed~p-d~D~viVPVGGGGLISGv~~a~K~~~P~VkvIGV~aE~ap~m~~Sl~~Gk~~~v~~~~tiADGIaVk~pG 217 (381)
T TIGR01127 139 GLEIMEDLP-DVDTVIVPVGGGGLISGVASAAKKLNPEVKVIGVEAEGAPSMVESLREGKIKAVESVDTIADGIAVKKPG 217 (381)
T ss_pred HHHHHHCCC-CCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCEEECCCEECCCC
T ss_conf 999996479-8137998417871287999999872899479986027855899998519905604564141521163788
Q ss_pred CCCCCCCC
Q ss_conf 22233102
Q gi|254780583|r 103 SHPIKIIA 110 (256)
Q Consensus 103 ~~~~~vi~ 110 (256)
.++|.++.
T Consensus 218 ~lTF~i~k 225 (381)
T TIGR01127 218 DLTFNIVK 225 (381)
T ss_pred CCCHHHHH
T ss_conf 76747899
No 184
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=20.41 E-value=65 Score=13.67 Aligned_cols=16 Identities=0% Similarity=-0.085 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9898999999998673
Q gi|254780583|r 238 NASNLAVFTELRIRKN 253 (256)
Q Consensus 238 ~~~~~~~f~~lR~~kd 253 (256)
..+|-++-..||+..|
T Consensus 285 ~GtPdevieki~~y~d 300 (331)
T TIGR03554 285 ASDPDEAVEQVGQYVD 300 (331)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 7999999999999997
No 185
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=20.41 E-value=54 Score=14.22 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=21.1
Q ss_pred CCCCHHHHCHHHHHHHHCCC-EEEECCC
Q ss_conf 58984330000011110001-0120001
Q gi|254780583|r 55 THHHIDHTRANLNLKKFFNC-TIFGPLE 81 (256)
Q Consensus 55 TH~H~DHigg~~~l~~~~~~-~v~~~~~ 81 (256)
-|.|.||+-+..++.+.-++ +||.|..
T Consensus 122 VHSh~~Hl~ali~~a~k~g~~kV~~H~f 149 (509)
T COG0696 122 VHSHIDHLLALIELAAKNGMKKVYLHAF 149 (509)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 4332899999999987668728999986
Done!