HHsearch results for GI: 254780583 and protein with PDBid: 1vme_A

>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3
Probab=99.90  E-value=5e-24  Score=175.01  Aligned_cols=155  Identities=19%  Similarity=0.158  Sum_probs=118.9

Q ss_pred             CEEEEEEECCCCEEEEECCCC---HHHHHHHHHHC-C-CCEEEEEECCCCHHHHCHHHHHHHHC--CCEEEECCCCCCCC
Q ss_conf             626999988998499986999---89999999985-9-96439998589843300000111100--01012000123432
Q gi|254780583|r   14 NFCILIHNHKYRLTAAIDAPD---TYIISKMLREK-G-WFLTHIFNTHHHIDHTRANLNLKKFF--NCTIFGPLEESSKI   86 (256)
Q Consensus        14 Ny~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~-~-~~i~~Il~TH~H~DHigg~~~l~~~~--~~~v~~~~~~~~~i   86 (256)
                      | +|||.++  +.+++||||.   .+.+++.+++. + .+|++|++||.|+||+||+..|.+++  +++|+++......+
T Consensus        53 N-sYLI~~~--~~~vLIDtg~~~~~~~~l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~~~~~~i~~~~~~~~~~  129 (410)
T 1vme_A           53 N-AYLVKLN--GANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLL  129 (410)
T ss_dssp             E-EEEEECS--SCEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHH
T ss_pred             E-EEEEEEC--CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf             9-9999979--957999199756799999999975797676899949396537754999999709998999788886420


Q ss_pred             C-----CCCEEEEEHHCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCEEEECCCCC-CCCCC---H--------
Q ss_conf             3-----32203310100111122233102554-45675226861465431377043046134-46663---1--------
Q gi|254780583|r   87 P-----GIDHGLSDGDTFDFGSHPIKIIATPG-HTIGHICYHFMNDHFLCVGDTLFSLGCGR-IFEDS---Y--------  148 (256)
Q Consensus        87 ~-----~~~~~l~dgd~i~ig~~~~~vi~tPG-HT~g~i~~~~~~~~~lFtGDtLF~~g~Gr-~~~G~---~--------  148 (256)
                      .     .....+++|+.+++|+.+++++++|| |+|+++++|.  ++++||||.++.-+|+. ++..+   .        
T Consensus       130 ~~~~~~~~~~~v~~g~~l~lG~~~l~~i~~P~~H~p~~~~~y~--~~iLFsgD~~g~~~~~~~~~d~~~~~~e~~~~~~~  207 (410)
T 1vme_A          130 EGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGGGYLLPEILDDSNESVVERYLPHVT  207 (410)
T ss_dssp             HHHHCCCCCEECCTTCEEEETTEEEEEEECTTSSSTTCEEEEE--TTEEEEETTTCCSSCCSSSBTTCHHHHHHHHHHHH
T ss_pred             HHCCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCEEE--CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             1016765316835799998667269999789988899710212--89899886343567787324764025678899999


Q ss_pred             -----------HHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf             -----------56776654420134465020166520
Q gi|254780583|r  149 -----------AEMFESLEKIKSFSDKTHIYFGHEYT  174 (256)
Q Consensus       149 -----------~~l~~Sl~kl~~Lp~~t~i~pGHeYt  174 (256)
                                 .++.++|+||..|+.+ .|+|||-..
T Consensus       208 ~yy~~i~~p~~~~v~~~L~ki~~L~i~-~I~PgHGpi  243 (410)
T 1vme_A          208 KYIVTVIGHYKNYILEGAEKLSSLKIK-ALLPGHGLI  243 (410)
T ss_dssp             HHHHHHHGGGHHHHHHHHHHHHTSCCS-EEEESSSCB
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHCCCCC-EEECCCCHH
T ss_conf             998875063289999999998659988-996088067