HHsearch results for GI: 254780583 and protein with PDBid: 2xr1_A
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.08 E-value=2.6e-11 Score=92.65 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=83.5
Q ss_pred CCEE-EEEEECC--CEEEEEEECCCCEEEEECCCCH----HH-HHH-HHHH-CC-CCEEEEEECCCCHHHHCHHHHHHH-
Q ss_conf 6145-3011057--6269999889984999869998----99-999-9998-59-964399985898433000001111-
Q gi|254780583|r 3 SLNI-AISLYHD--NFCILIHNHKYRLTAAIDAPDT----YI-ISK-MLRE-KG-WFLTHIFNTHHHIDHTRANLNLKK- 70 (256)
Q Consensus 3 ~~~i-~ip~~~D--Ny~YlI~d~~t~~~viIDpgd~----~~-i~~-~l~~-~~-~~i~~Il~TH~H~DHigg~~~l~~- 70 (256)
++.| ++..+.. -.||+|..++ ..+++|.|-. +. ... ++.+ .. -++++|++||.|.||+|+++.|.+
T Consensus 183 ~irit~LGG~~EIGrsc~lv~~~~--~~ILlDcG~~~~~~~~~~~~~~~p~~~~l~~iDAV~LTHaH~DH~G~Lp~L~k~ 260 (640)
T 2xr1_A 183 WVRVTALGGCKEVGRSCFLLSTPE--SRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY 260 (640)
T ss_dssp CCEEEEEECSSSSBCCEEEEECSS--CEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHT
T ss_pred EEEEEEECCCCCCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHCCHHHHHHC
T ss_conf 089999478886152779999689--699998888878523357443557768730188999888976763865999852
Q ss_pred HCCCEEEECCCCCCCC------------------C----------CCCEEEEEHHCCCCC-CCCCCCCCCCCCCCCCCEE
Q ss_conf 0001012000123432------------------3----------322033101001111-2223310255445675226
Q gi|254780583|r 71 FFNCTIFGPLEESSKI------------------P----------GIDHGLSDGDTFDFG-SHPIKIIATPGHTIGHICY 121 (256)
Q Consensus 71 ~~~~~v~~~~~~~~~i------------------~----------~~~~~l~dgd~i~ig-~~~~~vi~tPGHT~g~i~~ 121 (256)
.+++|||+.......+ + ...+.+.-|+.+.++ +++++.+.+ ||++|+.+.
T Consensus 261 g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~l~y~e~~~i~~di~Vt~~~a-GHslGsA~~ 339 (640)
T 2xr1_A 261 GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNA-GHILGSAIS 339 (640)
T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEEC-SSSTTCEEE
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCEEEEEEC-CCCCCCCCE
T ss_conf 8998899777999999999999998766423468878899998885068558997699579717999726-877865005
Q ss_pred EE--C--CCCCCCCCCEEEE
Q ss_conf 86--1--4654313770430
Q gi|254780583|r 122 HF--M--NDHFLCVGDTLFS 137 (256)
Q Consensus 122 ~~--~--~~~~lFtGDtLF~ 137 (256)
++ . ..+++||||.-|.
T Consensus 340 ~~~I~~g~~~IvyTGDfr~~ 359 (640)
T 2xr1_A 340 HFHIGDGLHNVVFTGDYKYE 359 (640)
T ss_dssp EEEETTTTEEEEECCSCCSS
T ss_pred EEEEEECCEEEEECCCCCCC
T ss_conf 78995088269973785667