HHsearch results for GI: 254780583 and protein with PDBid: 3af5_A
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.26 E-value=1.7e-11 Score=93.78 Aligned_cols=130 Identities=20% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCEE-EEEEECC--CEEEEEEECCCCEEEEECCCC-------HH--------HHHHHHHHCCCCEEEEEECCCCHHHHCH
Q ss_conf 6145-3011057--626999988998499986999-------89--------9999999859964399985898433000
Q gi|254780583|r 3 SLNI-AISLYHD--NFCILIHNHKYRLTAAIDAPD-------TY--------IISKMLREKGWFLTHIFNTHHHIDHTRA 64 (256)
Q Consensus 3 ~~~i-~ip~~~D--Ny~YlI~d~~t~~~viIDpgd-------~~--------~i~~~l~~~~~~i~~Il~TH~H~DHigg 64 (256)
++.| ++..+.. ..+|+|..+. .-+++|.|- .. +-..++.+. -++++|++||.|.||+|+
T Consensus 188 ~vrit~LGG~~EIGrs~~lv~~~~--~~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~~-~~idAVlITHaH~DHiG~ 264 (651)
T 3af5_A 188 WIRITGLGGFREVGRSALLVQTDE--SFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLRE-GLLDAIIITHAHLDHCGM 264 (651)
T ss_dssp CEEEEEEECSSSSSCCEEEEEESS--CEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHT-TCCCEEECSCSSHHHHTT
T ss_pred CEEEEEECCCCCCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCHHHHCC
T ss_conf 279999368886246679999679--68999899885656673113677677652123675-655689978898788686
Q ss_pred HHHHHHH--CCCEEEECCCCCCCC-----------------C-----------CCCEEEEEHHCCCCC-CCCCCCCCCCC
Q ss_conf 0011110--001012000123432-----------------3-----------322033101001111-22233102554
Q gi|254780583|r 65 NLNLKKF--FNCTIFGPLEESSKI-----------------P-----------GIDHGLSDGDTFDFG-SHPIKIIATPG 113 (256)
Q Consensus 65 ~~~l~~~--~~~~v~~~~~~~~~i-----------------~-----------~~~~~l~dgd~i~ig-~~~~~vi~tPG 113 (256)
++.|.++ +++|||+........ + .....++-|+.++++ ++.++++. -|
T Consensus 265 LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~~~-aG 343 (651)
T 3af5_A 265 LPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHN-AG 343 (651)
T ss_dssp HHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEE-CS
T ss_pred HHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEECC-CC
T ss_conf 88999737888877667899999999999999987611677778999999998541995799849807987998656-89
Q ss_pred CCCCCCEEEEC--C--CCCCCCCCEEE
Q ss_conf 45675226861--4--65431377043
Q gi|254780583|r 114 HTIGHICYHFM--N--DHFLCVGDTLF 136 (256)
Q Consensus 114 HT~g~i~~~~~--~--~~~lFtGDtLF 136 (256)
|+.|+.++++. + .+++||||.=|
T Consensus 344 H~lGsa~~~i~i~~~~~~IvyTGDfk~ 370 (651)
T 3af5_A 344 HILGSAIVHLHIGNGLHNIAITGDFKF 370 (651)
T ss_dssp SSTTCEEEEEEETTTTTCEEECCSCCC
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 887030899995688668997778788