RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus
Liberibacter asiaticus str. psy62]
(256 letters)
>gnl|CDD|163252 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of
this protein family are hydroxyacylglutathione
hydrolase, a detoxification enzyme known as glyoxalase
II. It follows lactoylglutathione lyase, or glyoxalase
I, and acts to remove the toxic metabolite methylglyoxal
and related compounds. This protein belongs to the
broader metallo-beta-lactamase family (pfam00753).
Length = 248
Score = 302 bits (775), Expect = 7e-83
Identities = 97/249 (38%), Positives = 144/249 (57%), Gaps = 3/249 (1%)
Query: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65
I I DN+ L+H+ + A +D + + L +G LT I THHH DH
Sbjct: 2 IPIPALSDNYIWLLHDPDGQ-AAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGV 60
Query: 66 LNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125
L + F ++GP EE +IPGI H + DGDT G +++A PGHT+GHI Y+ +
Sbjct: 61 AELLEAFPAPVYGPAEE--RIPGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPD 118
Query: 126 DHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185
L GDTLFS GCGR+FE + +M++SL+++ + D T +Y HEYT +N FAL+ +
Sbjct: 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCAHEYTLSNLRFALTVE 178
Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245
P N LQ+ +V+++R+Q T PST+ LE+ NPFLR ++ ++R L + A + VF
Sbjct: 179 PDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDPAVRAALGSQGADPVEVF 238
Query: 246 TELRIRKNQ 254
LR K+
Sbjct: 239 AALRAWKDN 247
>gnl|CDD|178020 PLN02398, PLN02398, hydroxyacylglutathione hydrolase.
Length = 329
Score = 222 bits (568), Expect = 5e-59
Identities = 97/229 (42%), Positives = 139/229 (60%)
Query: 13 DNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72
DN+ L+H+ +D + + L K LT+I NTHHH DHT NL LK +
Sbjct: 86 DNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY 145
Query: 73 NCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVG 132
+ G + +IPGID L DGD + F H + ++ TPGHT GHI ++F + G
Sbjct: 146 GAKVIGSAVDKDRIPGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTG 205
Query: 133 DTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQ 192
DTLFSL CG++FE + +M SL+KI S D T+IY GHEYT +N+ FALS +P+N LQ
Sbjct: 206 DTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYCGHEYTLSNSKFALSIEPNNEVLQ 265
Query: 193 KYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN 241
Y + V +RS+ L T P+T+ +EK NPFLR +T +RK+L++ + ++
Sbjct: 266 SYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRTSSTDIRKSLSIPDTAD 314
>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional.
Length = 251
Score = 170 bits (432), Expect = 4e-43
Identities = 89/233 (38%), Positives = 128/233 (54%), Gaps = 6/233 (2%)
Query: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65
+I + DN+ ++++ R +D + + + E W IF THHH DH
Sbjct: 4 NSIPAFDDNYIWVLNDEAGR-CLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGV 62
Query: 66 LNL-KKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM 124
L +KF ++GP E K G + DG+T H + ATPGHT+GHICY F
Sbjct: 63 KELVEKFPQIVVYGPQETQDK--GTTQVVKDGETAFVLGHEFSVFATPGHTLGHICY-FS 119
Query: 125 NDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSC 184
+ C GDTLFS GCGR+FE + ++M++SL+KI + D T I HEYT +N FALS
Sbjct: 120 KPYLFC-GDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCAHEYTLSNMKFALSI 178
Query: 185 DPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNME 237
PH+L + Y KVK +R++N T P + E+++N FLR E+ L +N E
Sbjct: 179 LPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTEDIDLINVINEE 231
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase.
Length = 258
Score = 156 bits (395), Expect = 8e-39
Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 11/251 (4%)
Query: 13 DNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72
DN+ LI + + A +D D + + E G + + THHH DH N +KK
Sbjct: 11 DNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV 70
Query: 73 -NCTIFGPLEESSKIPGIDHGLSDGDTFDFGSH-PIKIIATPGHTIGHICYHFMN----D 126
++G + + G H + +GD G I + TP HT GHI Y+ D
Sbjct: 71 PGIKVYGGSLD--NVKGCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGED 128
Query: 127 HFLCVGDTLFSLGCGRIFEDSYAEMFESLEK-IKSFSDKTHIYFGHEYTENNAYFALSCD 185
+ GDTLF GCG+ FE + +M++SL + S T +Y GHEYT N FAL+ +
Sbjct: 129 PAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLKFALTVE 188
Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245
P N +L++ + R L T PSTI E + NPF+R++ +++ + E S +
Sbjct: 189 PDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDLPEIQEKVGCE--SPVEAL 246
Query: 246 TELRIRKNQSK 256
E+R K+ K
Sbjct: 247 REVRKMKDNWK 257
>gnl|CDD|129082 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart
from the beta-lactamases a number of other proteins
contain this domain PUBMED:7588620. These proteins
include thiolesterases, members of the glyoxalase II
family, that catalyse the hydrolysis of
S-D-lactoyl-glutathione to form glutathione and D-lactic
acid and a competence protein that is essential for
natural transformation in Neisseria gonorrhoeae and
could be a transporter involved in DNA uptake. Except
for the competence protein these proteins bind two zinc
ions per molecule as cofactor.
Length = 183
Score = 101 bits (252), Expect = 2e-22
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 26/182 (14%)
Query: 13 DNFCILIHNHKYRLTAAIDA--PDTYIISKMLREKGWF-LTHIFNTHHHIDHTRANLNLK 69
L+ ID + + L++ G + I TH H DH L
Sbjct: 5 GVNSYLVEGDGG--AILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELL 62
Query: 70 KFFNCTIFGP----------------LEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPG 113
+ ++ P L + P D L DG+ D G +++I TPG
Sbjct: 63 EAPGAPVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPG 122
Query: 114 HTIGHICYHFMNDHFLCVGDTLFSLGCGRIFED----SYAEMFESLEKIKSFSDKTHIYF 169
HT G I + L GD LFS G GR +D S ++ ESL K+ + + +
Sbjct: 123 HTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASDSLESLLKLLALDPEL-VVP 181
Query: 170 GH 171
GH
Sbjct: 182 GH 183
>gnl|CDD|178547 PLN02962, PLN02962, hydroxyacylglutathione hydrolase.
Length = 251
Score = 49.4 bits (118), Expect = 8e-07
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 35/155 (22%)
Query: 40 KMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGI---------- 89
+++E G L + NTH H DH LK +K+PG+
Sbjct: 53 SLVKELGLKLIYAMNTHVHADHVTGTGLLK--------------TKLPGVKSIISKASGS 98
Query: 90 --DHGLSDGDTFDFGSHPIKIIATPGHTIGHICY------HFMNDHFLCVGDTLFSLGCG 141
D + GD FG +++ ATPGHT G + Y GD L GCG
Sbjct: 99 KADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCG 158
Query: 142 RI-FED-SYAEMFESLE-KIKSFSDKTHIYFGHEY 173
R F+ S ++++S+ +I + T IY H+Y
Sbjct: 159 RTDFQGGSSDQLYKSVHSQIFTLPKDTLIYPAHDY 193
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.
Length = 304
Score = 31.0 bits (71), Expect = 0.28
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 59 IDHTRAN-LNLKKFFNCTI----------FGPLEESSKIPGIDHGLSDGDTFDFGSHPIK 107
++ T N L L FFN + PL +++ + HG S + +DF H K
Sbjct: 42 VEKTTRNALKLLHFFNSDVPVAQGAAKPLVRPLRDAASV----HGESGMEGYDFPEHTRK 97
Query: 108 IIATP 112
++ P
Sbjct: 98 PLSIP 102
>gnl|CDD|180041 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
Length = 954
Score = 30.5 bits (70), Expect = 0.45
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 26 LTAAIDAPDTYIISKMLREKGWFLTH-IFNTHH 57
DA + + + +LR +LTH +FN +H
Sbjct: 447 DADVADASASALPAALLRTSA-YLTHPVFNRYH 478
>gnl|CDD|161842 TIGR00366, TIGR00366, conserved hypothetical integral membrane
protein.
Length = 438
Score = 30.6 bits (69), Expect = 0.48
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 102 GSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFS 137
GS P+ + ATP + + HI + + +T+FS
Sbjct: 153 GSMPL-LAATPNNPLKHIFVELFGRETIPLNETIFS 187
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 29.7 bits (67), Expect = 0.76
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 26 LTAAIDAP--DTYIISKMLREKGWFLTH-IFNTHH 57
TA AP D+ I S + RE +LTH IFN +H
Sbjct: 471 FTAESLAPEVDSSIPSSLARE-SPYLTHPIFNQYH 504
>gnl|CDD|162962 TIGR02651, RNase_Z, ribonuclease Z. Processing of the 3-prime end
of tRNA precursors may be the result of endonuclease or
exonuclease activity, and differs in different species.
Member of this family are ribonuclease Z, a tRNA 3-prime
endonuclease that processes tRNAs to prepare for
addition of CCA. In species where all tRNA sequences
already have the CCA tail, such as E. coli, the need for
such an enzyme is unclear. Protein similar to the E.
coli enzyme, matched by TIGR02649, are designated
ribonuclease BN.
Length = 299
Score = 29.1 bits (66), Expect = 1.3
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 25/65 (38%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKI 108
+ IF TH H DH I G +PG+ +S F P+ I
Sbjct: 52 IDRIFITHLHGDH--------------ILG-------LPGLLSTMS----FQGRKEPLTI 86
Query: 109 IATPG 113
PG
Sbjct: 87 YGPPG 91
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 28.3 bits (64), Expect = 1.9
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 187 HNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLR 231
N EL+ +++ + + LE+++ L+ E L+
Sbjct: 9 RNSELE---EQIRQLELKLRDLEAENEKLERELE-RLKSELEKLK 49
>gnl|CDD|179375 PRK02126, PRK02126, ribonuclease Z; Provisional.
Length = 334
Score = 28.0 bits (63), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 49 LTHIFNTHHHIDH-------TRANLNLKKFFNCTIFGP 79
++HIF +H H+DH R L + +FGP
Sbjct: 48 ISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLR--LFGP 83
>gnl|CDD|132301 TIGR03257, met_CoM_red_bet, methyl-coenzyme M reductase, beta
subunit. Members of this protein family are the beta
subunit of methyl coenzyme M reductase, also called
coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This
enzyme, with alpha, beta, and gamma subunits, catalyzes
the last step in methanogenesis. Several methanogens
have encode two such enzymes, designated I and II; this
model does not separate the isozymes.
Length = 433
Score = 27.6 bits (61), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 80 LEESSKIPGIDHGLSDGDT--FDFGSHPIKIIATPG 113
LE+ + +PG+D+G +G F F SH I PG
Sbjct: 335 LEKETGLPGVDYGRVEGTAVGFSFFSHSIYGGGGPG 370
>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP. This family
of proteins found in operons encoding phosphonate C-P
lyase systems as is observed in E. coli and is a member
of the metallo-beta-lactamase superfamily (pfam00753).
As defined by this model, all instances of this protein
are associated with the C-P lyase, but not all genomes
containing the C-P lyase system contain phnP.
Length = 238
Score = 27.0 bits (60), Expect = 5.5
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 23/95 (24%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTI--FGPLEESS-----KIPGI---DHGLSDGDT 98
L I TH+H+DH + L+ I +GP +E K PGI L +
Sbjct: 57 LQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGILDFSKPLEAFEP 116
Query: 99 FDFGSHPIK-------------IIATPGHTIGHIC 120
FD G + ++ T G + ++
Sbjct: 117 FDLGGLRVTPLPLVHSKLTFGYLLETDGQRVAYLT 151
>gnl|CDD|163314 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This
family of succinyldiaminopimelate transaminases (DapC)
includes the experimentally characterized enzyme from
Bordatella pertussis. The majority of genes in this
family are proximal to genes encoding components of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125).
Length = 393
Score = 26.6 bits (59), Expect = 6.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 64 ANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGD 97
A L F C +F L + S +PG+ G GD
Sbjct: 226 AQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD 259
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 26.6 bits (59), Expect = 7.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 85 KIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIG 117
K P G+S D FDF + ++ TPG G
Sbjct: 344 KTPE---GISSWDFFDFLLYQYHVVGTPGSGFG 373
>gnl|CDD|185044 PRK15087, PRK15087, hemolysin; Provisional.
Length = 219
Score = 26.2 bits (58), Expect = 7.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 56 HHHIDHTRANLNLKKFFNCTIF 77
+H I H RA LKKF +C I+
Sbjct: 71 YHAIPHQRAKRWLKKFDHCAIY 92
>gnl|CDD|184109 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 26.0 bits (58), Expect = 8.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 28 AAIDAPDTYIISKMLREKGWFLTHIFNTH 56
A D P+ + + LRE+GW ++
Sbjct: 315 VAFDDPNPDEVREKLRERGWRVSVTRCPE 343
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,068,268
Number of extensions: 246957
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 28
Length of query: 256
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,028,145
Effective search space: 664643925
Effective search space used: 664643925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.5 bits)