HHsearch alignment of GI: 254780584 and MMDB domain: 2jl6_1_
>2jl6_1 (1:) 50S ribosomal protein L28, 50S ribosomal protein L25; methylation, translation, paromomycin, tRNA-binding, tRNA, zinc, mRNA, ribosome, repressor, RNA-binding; 3.45A {Thermus thermophilus} PDB: 2jl8_1
Probab=99.92 E-value=1.8e-27 Score=184.71 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCCCCCCCC-------------HHHCCCCCEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCHHH
Q ss_conf 9854101178553677223-------------323023742555248999985577868999997245302364188779
Q gi|254780584|r 1 MSRVCELTKKTVMSGNKVS-------------HANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVERQGGLDR 67 (97)
Q Consensus 1 Msr~C~itGk~~~~Gn~vs-------------hs~~kTkR~~~PNlq~~~~~s~~l~~~v~l~vst~~lrtI~K~GGlD~ 67 (97)
||++|+||||+|++||+|| ||+++|+|+|.||||+++|||| |++++++|||+|||||+|.||+|+
T Consensus 1 Ma~~C~itGK~~~~Gn~vs~~g~~~~~G~~~~hs~~kTkR~~~PNlq~kr~~~~--g~~v~lrvstk~LrtI~K~G~~~~ 78 (89)
T 2jl6_1 1 MSKVCEISGKRPIVANSIQRRGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKVYELVERAA 78 (89)
T ss_dssp --CCCSSSCCCCEEEEEEEEESCCTTTSSSCCEEEEEEEEEECCCBCCBCCEET--TEECCBCCBGGGHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEC--CEEEEEEEEHHHHHHHHHHHHHCC
T ss_conf 977644369802547718744742224775212457533173378458999989--999999999699663999875112
Q ss_pred HHHHCCHHHHH
Q ss_conf 99729844553
Q gi|254780584|r 68 FLSNSKKENLS 78 (97)
Q Consensus 68 yLl~~~~~~Ls 78 (97)
|++.+.+.+||
T Consensus 79 ~~~~~~~~~l~ 89 (89)
T 2jl6_1 79 AAAAAAAAAAA 89 (89)
T ss_dssp CHHHHHHHHCC
T ss_pred CCCCCCCCCCC
T ss_conf 22212223579