Query gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 191
No_of_seqs 180 out of 6459
Neff 6.0
Searched_HMMs 33803
Date Wed Jun 1 18:14:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780585.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1n4c_A Auxilin; four helix bu 99.5 3.4E-15 1E-19 120.0 4.2 61 128-188 113-176 (182)
2 >1iur_A KIAA0730 protein; DNAJ 99.4 2.6E-13 7.6E-18 107.8 6.7 63 127-189 11-74 (88)
3 >2ctw_A DNAJ homolog subfamily 99.4 3.7E-13 1.1E-17 106.7 7.1 61 127-187 12-72 (109)
4 >2qwo_B Putative tyrosine-prot 99.4 1E-13 3.1E-18 110.3 2.7 61 127-187 28-91 (92)
5 >2ctq_A DNAJ homolog subfamily 99.3 1.7E-12 5E-17 102.4 6.2 60 128-187 16-75 (112)
6 >2guz_A Mitochondrial import i 99.3 2E-12 5.9E-17 101.9 6.3 59 126-188 8-67 (71)
7 >1bq0_A DNAJ, HSP40; chaperone 99.3 2.8E-13 8.2E-18 107.5 0.8 55 133-187 4-58 (103)
8 >2ys8_A RAB-related GTP-bindin 99.3 1.2E-11 3.5E-16 96.8 7.2 57 130-187 25-81 (90)
9 >3bvo_A CO-chaperone protein H 99.3 1E-11 3.1E-16 97.2 6.1 59 129-187 40-105 (124)
10 >2guz_B Mitochondrial import i 99.2 1.3E-11 3.8E-16 96.6 6.6 55 130-188 2-59 (65)
11 >2yua_A Williams-beuren syndro 99.2 6.4E-12 1.9E-16 98.6 4.9 63 125-187 10-72 (99)
12 >2dn9_A DNAJ homolog subfamily 99.2 4.7E-11 1.4E-15 92.9 6.8 59 130-188 5-63 (79)
13 >2o37_A Protein SIS1; HSP40, J 99.1 1E-10 3.1E-15 90.7 6.8 55 130-187 6-60 (92)
14 >1wjz_A 1700030A21RIK protein; 99.1 6.7E-11 2E-15 91.9 4.8 59 130-188 14-78 (94)
15 >2ctr_A DNAJ homolog subfamily 99.1 2.4E-10 7.2E-15 88.3 7.2 57 130-187 5-61 (88)
16 >1fpo_A HSC20, chaperone prote 99.1 2.2E-10 6.4E-15 88.6 6.8 55 133-187 2-63 (81)
17 >2dmx_A DNAJ homolog subfamily 99.1 1.5E-10 4.5E-15 89.6 5.8 57 131-187 8-65 (92)
18 >2cug_A Mkiaa0962 protein; DNA 99.1 2.3E-10 6.8E-15 88.4 6.5 60 127-187 12-71 (88)
19 >3hho_A CO-chaperone protein H 99.1 2.1E-10 6.3E-15 88.6 6.2 57 131-187 3-66 (85)
20 >2ej7_A HCG3 gene; HCG3 protei 99.1 2.2E-10 6.5E-15 88.5 5.4 59 130-188 7-66 (82)
21 >1faf_A Large T antigen; J dom 99.0 5E-10 1.5E-14 86.2 6.7 57 128-188 7-65 (79)
22 >2och_A Hypothetical protein D 99.0 4.6E-10 1.4E-14 86.5 6.3 56 130-188 6-61 (73)
23 >2ctp_A DNAJ homolog subfamily 99.0 3.4E-10 1E-14 87.3 5.4 57 130-187 5-61 (78)
24 >2pf4_E Small T antigen; PP2A, 99.0 3.9E-10 1.1E-14 86.9 4.3 56 128-187 7-64 (92)
25 >1gh6_A Large T antigen; tumor 99.0 6.3E-10 1.9E-14 85.6 4.6 56 129-188 5-62 (74)
26 >1hdj_A Human HSP40, HDJ-1; mo 99.0 8.3E-10 2.4E-14 84.8 5.2 54 133-187 4-57 (77)
27 >2h1n_A Oligoendopeptidase F; 59.7 13 0.00038 18.1 3.9 31 138-168 93-123 (132)
28 >1x5b_A Signal transducing ada 57.4 6.3 0.00019 20.1 2.0 47 139-190 15-61 (76)
29 >1dvp_A HRS, hepatocyte growth 52.7 8.6 0.00025 19.2 2.1 43 143-190 13-55 (73)
30 >1o17_A Anthranilate PRT, anth 48.8 20 0.00059 16.9 5.5 49 130-178 43-100 (169)
31 >2elc_A Trp D, anthranilate ph 46.1 22 0.00064 16.6 5.4 48 131-178 51-107 (166)
32 >2bpq_A Anthranilate phosphori 40.5 26 0.00078 16.0 5.5 47 132-178 36-92 (161)
33 >1elk_A Target of MYB1; superh 37.7 24 0.00071 16.3 2.5 54 132-190 99-153 (157)
34 >3csw_A BCAT, putative branche 28.3 41 0.0012 14.8 3.0 34 131-164 63-96 (120)
35 >2jp9_A Wilms tumor 1; DNA bin 27.5 20 0.0006 16.8 0.7 11 27-37 5-15 (29)
36 >2jp9_A Wilms tumor 1; DNA bin 26.8 25 0.00073 16.3 1.0 12 26-37 6-17 (32)
37 >1a1h_A QGSR zinc finger pepti 23.4 27 0.00081 15.9 0.7 11 27-37 5-15 (30)
38 >1juq_A ADP-ribosylation facto 21.1 56 0.0017 13.9 4.6 40 143-190 109-148 (171)
39 >1ubd_C Protein (YY1 zinc fing 20.9 33 0.00096 15.5 0.7 11 27-37 5-15 (30)
No 1
>>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} (A:)
Probab=99.54 E-value=3.4e-15 Score=120.00 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHHHHHHHHHHC
Q ss_conf 88897699861777328899999999999999657889979---87999999999999999962
Q gi|254780585|r 128 GSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD---RGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 128 ~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~---~~~ee~~~~I~~Ay~~Lk~S 188 (191)
.....++|+||||++++|.++||++||+|+++||||++.++ ..++++|++|++||++|.+.
T Consensus 113 ~~~~~d~Y~vLgv~~~as~~eIKkAYRkLa~~~HPDk~~~~~~~~~A~e~F~~I~~AYe~Lsd~ 176 (182)
T 1n4c_A 113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 176 (182)
T ss_dssp SCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 5877678865676666899999999999999978787899678999999999999999997899
No 2
>>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} (A:)
Probab=99.43 E-value=2.6e-13 Score=107.76 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHCC
Q ss_conf 8888976998617773288999999999999996578899798-79999999999999999628
Q gi|254780585|r 127 VGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILKKSG 189 (191)
Q Consensus 127 ~~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~-~~ee~~~~I~~Ay~~Lk~Sg 189 (191)
......+.|+||||+++++.++||++|++|+++||||+|.++. .++++|+.|++||++|.+.+
T Consensus 11 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~e~f~~i~~Ay~vLs~~~ 74 (88)
T 1iur_A 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQA 74 (88)
T ss_dssp SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8514899999968998989999999999999987935489989999999999999999998898
No 3
>>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=99.42 E-value=3.7e-13 Score=106.71 Aligned_cols=61 Identities=25% Similarity=0.501 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 127 VGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 127 ~~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
......+.|+||||++++|.++||++|++|+++||||++.++..++++|++|++||++|.+
T Consensus 12 ~~~~~~~~Y~iLgv~~~At~~eIk~aYr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d 72 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 3256898388719899969999999999999886100034227899999999999999599
No 4
>>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphorylation; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A (B:)
Probab=99.39 E-value=1e-13 Score=110.30 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf 8888976998617773288999999999999996578899798---799999999999999996
Q gi|254780585|r 127 VGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR---GSEERFQAVIQAYKILKK 187 (191)
Q Consensus 127 ~~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~---~~ee~~~~I~~Ay~~Lk~ 187 (191)
.......+|+||||++++|.++||++|++|+++||||+++++. .++++|+.|++||++|++
T Consensus 28 ~~~~~~~~y~iLgl~~~as~~eIk~ayrkl~~~~HPDk~~~~~~~~~a~~~f~~in~Aye~L~d 91 (92)
T 2qwo_B 28 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp TSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5177667883568676689999999999999998964579966788999999999999999866
No 5
>>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.34 E-value=1.7e-12 Score=102.41 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 888976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 128 GSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 128 ~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
.....+.|+||||+++++.++||++|++|+++||||++.++..++++|+.|++||+||.+
T Consensus 16 ~~~~~~~Y~iLgv~~~As~~eIkkAYrkl~~~~hpd~~~~~~~~~~~~~~i~~Ay~vLsd 75 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN 75 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 377878498849999969999999999999984011013458899999999999999099
No 6
>>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=99.33 E-value=2e-12 Score=101.92 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5888897699861777328-89999999999999965788997987999999999999999962
Q gi|254780585|r 126 RVGSMQFNAFEILGLLSDS-SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 126 ~~~~~~~~Al~~Lgl~~~~-~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
.......++|+||||++++ |.++||++|++|+++||||++++ +++|+.|++||++|.+.
T Consensus 8 ~~~~~~~~~y~vLgl~~~a~s~~eIk~ayr~la~~~HPDk~~~----~~~f~~i~~Ay~vL~d~ 67 (71)
T 2guz_A 8 DPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKR 67 (71)
T ss_dssp CSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHCCC
T ss_conf 8886999999873899998979999999999999869322799----99999999999998060
No 7
>>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} (A:)
Probab=99.31 E-value=2.8e-13 Score=107.53 Aligned_cols=55 Identities=40% Similarity=0.732 Sum_probs=52.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 133 ~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
+.|+||||+++||.++||++|++|+++||||++.++..++++|++|++||++|.+
T Consensus 4 d~Y~iLGv~~~As~~eIk~AYrkla~~~HPDk~~~~~~a~~~f~~i~eAy~vL~~ 58 (103)
T 1bq0_A 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58 (103)
T ss_dssp CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTC
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8899819999989999999999988876411378864799999999999997227
No 8
>>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.27 E-value=1.2e-11 Score=96.82 Aligned_cols=57 Identities=32% Similarity=0.507 Sum_probs=51.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
...+.|+||||++++|.++||++|++|+++||||++. +..++++|+.|++||++|.+
T Consensus 25 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~hPd~~~-~~~~~~~f~~I~~Ay~vL~d 81 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLK 81 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCC-CTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHH
T ss_conf 1541188747788856889999999888750664345-88958899999999999998
No 9
>>3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens} (A:1-124)
Probab=99.25 E-value=1e-11 Score=97.23 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 88976998617773--288999999999999996578899798-----799999999999999996
Q gi|254780585|r 129 SMQFNAFEILGLLS--DSSPEEIRGRYKDLVKKHHPDANGGDR-----GSEERFQAVIQAYKILKK 187 (191)
Q Consensus 129 ~~~~~Al~~Lgl~~--~~~~~~ik~~yk~lvk~~HPD~n~g~~-----~~ee~~~~I~~Ay~~Lk~ 187 (191)
....+.|+||||+. ++|.++||++|++|+++||||++.+.. .++++|++|++||++|.+
T Consensus 40 ~~~~~~Y~iLgl~~~~~as~~eIk~aYr~l~~~~HPD~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 105 (124)
T 3bvo_A 40 DPTRDYFSLXDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105 (124)
T ss_dssp CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 878887998199988898999999999999998590301211699998878899999999999589
No 10
>>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} (B:)
Probab=99.25 E-value=1.3e-11 Score=96.60 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8976998617773---2889999999999999965788997987999999999999999962
Q gi|254780585|r 130 MQFNAFEILGLLS---DSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 130 ~~~~Al~~Lgl~~---~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
...++|+||||++ ++|.++||++|++|+++||||+|+. .++|+.|++||++|.+.
T Consensus 2 s~~d~y~iLgl~~~~~~as~~eIk~ayrkla~~~HPDk~~~----~~~f~~i~~Ay~vL~d~ 59 (65)
T 2guz_B 2 TLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHHHH
T ss_conf 89999999689867553799999999999999739656898----99999999999999999
No 11
>>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.25 E-value=6.4e-12 Score=98.60 Aligned_cols=63 Identities=27% Similarity=0.451 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 158888976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 125 HRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 125 ~~~~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
........+.|+||||+++++.++||++|++|+++||||++......+++|+.|++||++|.+
T Consensus 10 ~~~~~~~~d~Y~vLgv~~~As~~eIk~aYr~l~~~~hpD~~~~~~~~~~~f~~I~~Ay~vL~d 72 (99)
T 2yua_A 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGS 72 (99)
T ss_dssp CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 998876366998849999959999999999999984541111101317899999999999799
No 12
>>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=99.18 E-value=4.7e-11 Score=92.91 Aligned_cols=59 Identities=34% Similarity=0.601 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89769986177732889999999999999965788997987999999999999999962
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
...+.|+||||+++++.++||++|++|++++|||++.+...++++|+.|++||++|.+.
T Consensus 5 ~~~d~Y~iLgv~~~As~~~Ik~aYr~l~~~~hpd~~~~~~~a~~~f~~i~~Ay~vLsd~ 63 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSH
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99986998399999499999999999998642000123115999999899889871889
No 13
>>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} (A:)
Probab=99.14 E-value=1e-10 Score=90.70 Aligned_cols=55 Identities=27% Similarity=0.615 Sum_probs=49.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
...+.|+||||+++++.++||++|++|++++|||.+... +++|++|++||++|.+
T Consensus 6 ~~~d~Y~iLgv~~~As~~eIk~Ayr~l~~~~hpd~~~~~---~~~f~~i~~Ay~vLsd 60 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILND 60 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH---HHHHHHHHHHHHHHCC
T ss_conf 667059881989993999999999875031231133688---9999968999988689
No 14
>>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} (A:)
Probab=99.11 E-value=6.7e-11 Score=91.93 Aligned_cols=59 Identities=25% Similarity=0.475 Sum_probs=51.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH------HHHHHHHHHHHHHHHHHHC
Q ss_conf 8976998617773288999999999999996578899798------7999999999999999962
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR------GSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~------~~ee~~~~I~~Ay~~Lk~S 188 (191)
...+.|+||||++++|.++||++|++|+++||||++.++. .++++|+.|+.||++|.+.
T Consensus 14 ~~~~~Y~iLgv~~~as~~eIk~aY~~l~~~~hPDk~~~~~~~~~~~~~~~~f~~i~~Ay~vL~d~ 78 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 03584998399999599999999999999832023777415888888899999999999995999
No 15
>>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.10 E-value=2.4e-10 Score=88.28 Aligned_cols=57 Identities=28% Similarity=0.528 Sum_probs=51.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
...+.|+||||+++++.++||++|++|++++|||++. .....++|+.|++||++|.+
T Consensus 5 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~hpd~~~-~~~~~~~f~~i~~Ay~vL~d 61 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSD 61 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCC
T ss_conf 9988787659899969999999999999885020157-62789999999999998099
No 16
>>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} (A:1-81)
Probab=99.10 E-value=2.2e-10 Score=88.59 Aligned_cols=55 Identities=22% Similarity=0.454 Sum_probs=48.6
Q ss_pred HHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 6998617773--288999999999999996578899798-----799999999999999996
Q gi|254780585|r 133 NAFEILGLLS--DSSPEEIRGRYKDLVKKHHPDANGGDR-----GSEERFQAVIQAYKILKK 187 (191)
Q Consensus 133 ~Al~~Lgl~~--~~~~~~ik~~yk~lvk~~HPD~n~g~~-----~~ee~~~~I~~Ay~~Lk~ 187 (191)
+.|+||||++ ++|.++|+++|++|++++|||++.+.. .++++|+.|++||++|+.
T Consensus 2 d~Y~iLgi~~~~~as~~eIk~ay~~l~~~~HPDk~~~~~~~~~~~~~~~f~~i~~Ay~vL~d 63 (81)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63 (81)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 74887899999999999999999999988597646540167899999999999999999798
No 17
>>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.09 E-value=1.5e-10 Score=89.59 Aligned_cols=57 Identities=35% Similarity=0.715 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHH
Q ss_conf 9769986177732889999999999999965788997987-99999999999999996
Q gi|254780585|r 131 QFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-SEERFQAVIQAYKILKK 187 (191)
Q Consensus 131 ~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~-~ee~~~~I~~Ay~~Lk~ 187 (191)
..+.|+||||++++|.++||++|++|++++|||.+..... .+++|+.|++||++|.+
T Consensus 8 ~~d~Y~iLgv~~~As~~eIk~Ay~~l~~~~~pd~~~~~~~~~~~~~~~i~~Ay~vLsd 65 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9887998199999699999999998877502456888779999999999999998199
No 18
>>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} (A:)
Probab=99.08 E-value=2.3e-10 Score=88.42 Aligned_cols=60 Identities=33% Similarity=0.729 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 127 VGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 127 ~~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
......+.|+||||+++++.++||++|++|++++|||++.+ ..+++.|+.|.+||++|.+
T Consensus 12 ~~~~~~d~Y~iLgv~~~at~~eIk~aYr~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~vLsd 71 (88)
T 2cug_A 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSN 71 (88)
T ss_dssp CCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCC
T ss_conf 76348986988599999499999999999998860301378-6799999999999999199
No 19
>>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae} (A:1-85)
Probab=99.08 E-value=2.1e-10 Score=88.63 Aligned_cols=57 Identities=25% Similarity=0.413 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHHH
Q ss_conf 976998617773288--9999999999999965788997987-----99999999999999996
Q gi|254780585|r 131 QFNAFEILGLLSDSS--PEEIRGRYKDLVKKHHPDANGGDRG-----SEERFQAVIQAYKILKK 187 (191)
Q Consensus 131 ~~~Al~~Lgl~~~~~--~~~ik~~yk~lvk~~HPD~n~g~~~-----~ee~~~~I~~Ay~~Lk~ 187 (191)
..+.|+||||+++++ ..+||++|++|+++||||++.+... ++++|+.|+.||++|.+
T Consensus 3 ~~d~Y~iLgv~~~as~d~~~Ik~aYr~l~~~~HPd~~~~~~~~~~~~~~~~f~~i~~AyevL~d 66 (85)
T 3hho_A 3 AXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKD 66 (85)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8687998499988999999999999999998383224452588999899999999999999598
No 20
>>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=99.05 E-value=2.2e-10 Score=88.55 Aligned_cols=59 Identities=32% Similarity=0.596 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHC
Q ss_conf 89769986177732889999999999999965788997987-999999999999999962
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-SEERFQAVIQAYKILKKS 188 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~-~ee~~~~I~~Ay~~Lk~S 188 (191)
...+.|+||||+++++.++||++|++|++++|||++..... ++++|++|++||++|.+-
T Consensus 7 ~~~d~Y~iLgv~~~as~~eIk~ay~~l~~~~hpd~~~~~~~~~~~~~~~I~~Ay~vL~d~ 66 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA 66 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 985689993999995999999999999987087668754388999999999899985999
No 21
>>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} (A:)
Probab=99.04 E-value=5e-10 Score=86.23 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88897699861777328--89999999999999965788997987999999999999999962
Q gi|254780585|r 128 GSMQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 128 ~~~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
.......|+||||+++| |.++||++|++|++++|||+++. .+.|+.|++||++|.+.
T Consensus 7 ~~~~~d~Y~iLgv~~~A~~s~~eIk~ayr~l~~~~hPdk~~~----~~~f~~i~~Ay~vLsd~ 65 (79)
T 1faf_A 7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHCCH
T ss_conf 657899999948999989899999999999999879888998----99999999999998789
No 22
>>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, PSI-2, protein structure initiative; 1.86A {Caenorhabditis elegans} (A:)
Probab=99.03 E-value=4.6e-10 Score=86.45 Aligned_cols=56 Identities=30% Similarity=0.628 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89769986177732889999999999999965788997987999999999999999962
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
...+.|+||||+++++.++|+.+|++|+++||||.+... ++.|+.|++||++|.+.
T Consensus 6 ~~~d~Y~iLgv~~~As~~eI~~aYr~l~~~~hpd~~~~~---~~~~~~i~~Ay~iL~dp 61 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDE 61 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSH
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHCCH
T ss_conf 558899981999995999999999999998499878468---99999999999997899
No 23
>>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.03 E-value=3.4e-10 Score=87.30 Aligned_cols=57 Identities=35% Similarity=0.594 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8976998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
...+.|+||||+++++.++||++|++|++++|||.+. .....++|+.|++||++|.+
T Consensus 5 ~~~~~Y~iLgi~~~as~~eIk~aY~~l~~~~hpd~~~-~~~~~~~~~~i~~Ay~iL~d 61 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSN 61 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCC
T ss_conf 9998367559899939999999999999885110135-40199999988888987089
No 24
>>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulator/viral protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C (E:1-92)
Probab=98.98 E-value=3.9e-10 Score=86.94 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 88897699861777328--8999999999999996578899798799999999999999996
Q gi|254780585|r 128 GSMQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 128 ~~~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
.....+.|+||||+++| |.++||++|++|++++|||+++... +|+.|++||++|.+
T Consensus 7 ~~~~~~yY~vLgv~~~as~t~~eIk~AYr~l~~~~HPDk~~~~~----~f~~i~~Ay~vL~d 64 (92)
T 2pf4_E 7 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMED 64 (92)
T ss_dssp HHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCT----TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHCC
T ss_conf 56788799990999899989999999999999986501065699----99999999999489
No 25
>>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} (A:1-74)
Probab=98.96 E-value=6.3e-10 Score=85.56 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8897699861777328--89999999999999965788997987999999999999999962
Q gi|254780585|r 129 SMQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 129 ~~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
....+.|+||||++++ |.++||++|++|++++|||+++.+ ++|+.|++||++|.+.
T Consensus 5 ~~~~~~Y~iLgv~~~a~~s~~eIk~ayr~~~~~~hPD~~~~~----~~f~~i~~Ay~vLsdp 62 (74)
T 1gh6_A 5 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDG 62 (74)
T ss_dssp HHHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHCCH
T ss_conf 444059999299988887999999999999999886847168----9999999999983589
No 26
>>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} (A:)
Probab=98.96 E-value=8.3e-10 Score=84.79 Aligned_cols=54 Identities=35% Similarity=0.672 Sum_probs=48.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 133 ~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
+.|+||||++++|.++||++|++|++++|||++.. ....+.|+.|+.||++|.+
T Consensus 4 d~Y~iLgv~~~As~~eIk~aYr~l~~~~hpd~~~~-~~~~~~~~~i~~Ay~iLsd 57 (77)
T 1hdj_A 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSD 57 (77)
T ss_dssp CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTC
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCC
T ss_conf 65978499999499999999999988759875567-0299999999999999798
No 27
>>2h1n_A Oligoendopeptidase F; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG, PSI; 3.00A {Geobacillus stearothermophilus} PDB: 2h1j_A (A:217-274,A:403-476)
Probab=59.73 E-value=13 Score=18.13 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=26.6
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1777328899999999999999657889979
Q gi|254780585|r 138 LGLLSDSSPEEIRGRYKDLVKKHHPDANGGD 168 (191)
Q Consensus 138 Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~ 168 (191)
+=-+|++|.++-+..|++|.++|.|+++=++
T Consensus 93 vYenP~~Tp~ER~~~w~~Le~~Y~p~~dy~g 123 (132)
T 2h1n_A 93 VYENPDXTPAERKSVWRNIEKAYLPTRDYAD 123 (132)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHCTTCCCTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8744214756677999999999758776678
No 28
>>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:88-163)
Probab=57.39 E-value=6.3 Score=20.11 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7773288999999999999996578899798799999999999999996289
Q gi|254780585|r 139 GLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190 (191)
Q Consensus 139 gl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~Sg~ 190 (191)
.|-.+-+...||.+-.+|+..|.=. -.++.+ |..|..+|+.||..|+
T Consensus 15 kl~~~~~~~~Vk~kil~li~~W~~~-F~~~p~----l~~i~~~Y~~Lk~~G~ 61 (76)
T 1x5b_A 15 AVIKNKAHPKVCEKLKSLMVEWSEE-FQKDPQ----FSLISATIKSMKEEGI 61 (76)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHH-TTTCST----THHHHHHHHHHHTTTC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHH-HCCCCC----CHHHHHHHHHHHHCCC
T ss_conf 9964689857999999999999998-477876----4499999999998289
No 29
>>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix; HET: CIT; 2.00A {Drosophila melanogaster} (A:84-156)
Probab=52.75 E-value=8.6 Score=19.24 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 288999999999999996578899798799999999999999996289
Q gi|254780585|r 143 DSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190 (191)
Q Consensus 143 ~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~Sg~ 190 (191)
..+...|+.+-.+|+..|--.- .++. .|..|.++|+.||+.|+
T Consensus 13 ~~~~~~Vk~kiL~li~~Wa~~f-~~~~----~l~~i~~~Y~~Lk~~G~ 55 (73)
T 1dvp_A 13 STPHENVRQKMLELVQTWAYAF-RSSD----KYQAIKDTMTILKAKGH 55 (73)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHT-TTCS----SCCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHC-CCCC----CCHHHHHHHHHHHHCCC
T ss_conf 6898899999999999999980-7884----40899999999997786
No 30
>>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} (A:75-155,A:258-345)
Probab=48.77 E-value=20 Score=16.87 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHH------HHHHCC--CCCCCCHH-HHHHHHHH
Q ss_conf 897699861777328899999999999------999657--88997987-99999999
Q gi|254780585|r 130 MQFNAFEILGLLSDSSPEEIRGRYKDL------VKKHHP--DANGGDRG-SEERFQAV 178 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~~~~~ik~~yk~l------vk~~HP--D~n~g~~~-~ee~~~~I 178 (191)
--.+-|+.||++.+.+.+++.+.+.+. +-.||| |..+|+.. +.+.++.|
T Consensus 43 GsaD~le~lG~~~~~~~e~~~~~l~~~g~~f~~ap~~hpl~~l~g~~~~ena~i~~~v 100 (169)
T 1o17_A 43 GSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPIEKLIVNSAEDSAIKIVRA 100 (169)
T ss_dssp SHHHHHHHHTBCCCCCHHHHHHHHHHHSEEEEEHHHHCGGGGTBCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 7089999861224578066789987236521257656788871489999999999999
No 31
>>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA; 1.55A {Thermus thermophilus HB8} (A:68-155,A:252-329)
Probab=46.09 E-value=22 Score=16.60 Aligned_cols=48 Identities=21% Similarity=0.406 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH------HHHHCC--CCCCCCHH-HHHHHHHH
Q ss_conf 97699861777328899999999999------999657--88997987-99999999
Q gi|254780585|r 131 QFNAFEILGLLSDSSPEEIRGRYKDL------VKKHHP--DANGGDRG-SEERFQAV 178 (191)
Q Consensus 131 ~~~Al~~Lgl~~~~~~~~ik~~yk~l------vk~~HP--D~n~g~~~-~ee~~~~I 178 (191)
-.+-|+.||++...+.+++++...+. +-.||| |..+|+.. +.+.++.|
T Consensus 51 ~~d~le~lg~~~~~~~~~~~~~l~~~g~~f~~ap~~~pl~dl~~g~~~ena~~l~~v 107 (166)
T 2elc_A 51 SADLLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPLEALKGGGPEENAALARRL 107 (166)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHSEEEEEHHHHCGGGGGCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 898987621333677677889986237313126455726641589999999999999
No 32
>>2bpq_A Anthranilate phosphoribosyltransferase; tryptophan biosynthesis, transferase phosphoribosyltransferase, amino-acid biosynthesis; 1.9A {Mycobacterium tuberculosis} PDB: 1zvw_A* (A:113-184,A:285-373)
Probab=40.48 E-value=26 Score=16.05 Aligned_cols=47 Identities=26% Similarity=0.488 Sum_probs=35.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHH------HHHHCC---CCCCCCHH-HHHHHHHH
Q ss_conf 7699861777328899999999999------999657---88997987-99999999
Q gi|254780585|r 132 FNAFEILGLLSDSSPEEIRGRYKDL------VKKHHP---DANGGDRG-SEERFQAV 178 (191)
Q Consensus 132 ~~Al~~Lgl~~~~~~~~ik~~yk~l------vk~~HP---D~n~g~~~-~ee~~~~I 178 (191)
.+-|+.||++.+.+.+++++.+.+. +-.||| |..||+.. +.+.++.|
T Consensus 36 advle~LGi~~~~~~~~~~~~l~~~g~~fl~a~~~~P~l~~l~gg~~~ena~i~~~i 92 (161)
T 2bpq_A 36 ADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPQLDQLAGGDAQANAAAVRAV 92 (161)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHHHSEEEEEHHHHSCCGGGGCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHEECCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf 557887531345657877453311795898512234220201358999999999999
No 33
>>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} (A:)
Probab=37.69 E-value=24 Score=16.31 Aligned_cols=54 Identities=13% Similarity=0.337 Sum_probs=36.8
Q ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7699861777-3288999999999999996578899798799999999999999996289
Q gi|254780585|r 132 FNAFEILGLL-SDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190 (191)
Q Consensus 132 ~~Al~~Lgl~-~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~Sg~ 190 (191)
.+.+..|-.. ...+..+||.+-.+|+..|.-.- ++++. +..|..+|+.|+..|+
T Consensus 99 l~~l~~l~~~~~~~~~~~Vk~kil~li~~W~~~f-~~~~~----~~~~~~~y~~Lk~~G~ 153 (157)
T 1elk_A 99 VESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF-RSSPD----LTGVVTIYEDLRRKGL 153 (157)
T ss_dssp HHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH-TTCTT----CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCC----CHHHHHHHHHHHHCCC
T ss_conf 9999999853678982999999999999999986-78965----5599999999998588
No 34
>>3csw_A BCAT, putative branched-chain-amino-acid aminotransferase; TM0831, structural genomics, joint center for structural genomics, JCSG; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} (A:1-120)
Probab=28.29 E-value=41 Score=14.77 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=30.0
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9769986177732889999999999999965788
Q gi|254780585|r 131 QFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDA 164 (191)
Q Consensus 131 ~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~ 164 (191)
..+..+.|+++.+.+.++|+..-.+|+++.++|.
T Consensus 63 L~~Sa~~l~i~~p~~~e~~~~~i~~~i~~n~~~~ 96 (120)
T 3csw_A 63 LKRSADFFNLPLSLSFDEFTKVLKAGADEFKQEV 96 (120)
T ss_dssp HHHHHHTTTCCCSSCHHHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9998887543101106899999999987534463
No 35
>>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:91-119)
Probab=27.54 E-value=20 Score=16.80 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 76786475765
Q gi|254780585|r 27 SICQWDNCQCI 37 (191)
Q Consensus 27 r~C~~~gC~~~ 37 (191)
=+|+||||.+.
T Consensus 5 ~~C~~~gC~k~ 15 (29)
T 2jp9_A 5 FSCRWPSCQKK 15 (29)
T ss_dssp EECCSTTCCCE
T ss_pred CCEECCCCCCE
T ss_conf 52467998999
No 36
>>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* (A:1-32)
Probab=26.82 E-value=25 Score=16.25 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCC
Q ss_conf 876786475765
Q gi|254780585|r 26 SSICQWDNCQCI 37 (191)
Q Consensus 26 ~r~C~~~gC~~~ 37 (191)
.=+|++|||.+.
T Consensus 6 pf~C~~~gC~K~ 17 (32)
T 2jp9_A 6 PFMCAYPGCNKR 17 (32)
T ss_dssp CBCCCSTTSCCC
T ss_pred CEECCCCCCCCC
T ss_conf 878889997999
No 37
>>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), zinc finger, DNA-binding protein; HET: DNA; 1.60A {Mus musculus} (A:1-30)
Probab=23.39 E-value=27 Score=15.94 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q ss_conf 76786475765
Q gi|254780585|r 27 SICQWDNCQCI 37 (191)
Q Consensus 27 r~C~~~gC~~~ 37 (191)
=.|.||||.+.
T Consensus 5 y~C~~~gC~k~ 15 (30)
T 1a1h_A 5 YACPVESCDRR 15 (30)
T ss_dssp EECCSSSCCCE
T ss_pred CCCCCCCCCCC
T ss_conf 81995658899
No 38
>>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} (A:)
Probab=21.11 E-value=56 Score=13.90 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 288999999999999996578899798799999999999999996289
Q gi|254780585|r 143 DSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190 (191)
Q Consensus 143 ~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~Sg~ 190 (191)
..+...||.+-.+|+..|+-.- ++ +..|..+|..|+..|.
T Consensus 109 ~~~~~~Vk~kil~li~~W~~~f-~~-------~~~~~~~Y~~Lk~~G~ 148 (171)
T 1juq_A 109 DRVSEKVKTKVIELLYSWTXAL-PE-------EAKIKDAYHXLKRQGI 148 (171)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHC-TT-------CHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHC-CC-------CHHHHHHHHHHHHCCC
T ss_conf 8677999999999999999987-04-------1789999999998499
No 39
>>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} (C:59-88)
Probab=20.91 E-value=33 Score=15.46 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=8.3
Q ss_pred CCCCCCCCCCC
Q ss_conf 76786475765
Q gi|254780585|r 27 SICQWDNCQCI 37 (191)
Q Consensus 27 r~C~~~gC~~~ 37 (191)
=.|+++||.+.
T Consensus 5 y~C~~~gCgk~ 15 (30)
T 1ubd_C 5 FQCTFEGCGKR 15 (30)
T ss_dssp EECCSTTCCCE
T ss_pred CCCCCCCCCCC
T ss_conf 11112333322
Done!