HHsearch results for GI: 254780585 and protein with PDBid: 1faf_A
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.25 E-value=1.3e-11 Score=95.54 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=48.7
Q ss_pred HHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 897699861777328--89999999999999965788997987999999999999999962
Q gi|254780585|r 130 MQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
...++|+||||++++ +..+||++|++|+++||||++ |+ +++|++|++||++|++.
T Consensus 9 ~~~~~y~iLgl~~~~~~~~~~Ik~aYr~l~~~~HPDk~-~d---~e~~~~i~~Ay~~L~d~ 65 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GS---HALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CC---HHHHHHHHHHHHHHCCH
T ss_conf 89999999198988789999999999999998498768-87---99999999999997589