HHSEARCH alignment of GI: 254780585 and SCOP domain: d1gh6a_

Alignment

Probab=99.29  E-value=8.7e-13  Score=101.72  Aligned_cols=54  Identities=26%  Similarity=0.479  Sum_probs=47.6

Q ss_pred             HHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             897699861777328--8999999999999996578899798799999999999999996
Q gi|254780585|r  130 MQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK  187 (191)
Q Consensus       130 ~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~  187 (191)
                      ...+-|+||||+.+|  +..+||++|++||++||||++|.    +++|++|++||.+|..
T Consensus         6 ~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd   61 (114)
T d1gh6a_           6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED   61 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHHHCC
T ss_conf             8889999909998878899999999999998715430136----8999999879887078

SCOP domain information

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]