RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ
family protein [Candidatus Liberibacter asiaticus str. psy62]
(191 letters)
>gnl|CDD|128567 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 64.2 bits (157), Expect = 2e-11
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD-RGSEERFQAVIQAYKILKK 187
+ +EILG+ D+S +EI+ Y+ L K+HPD N GD +EE+F+ + +AY++L
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57
>gnl|CDD|184601 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 58.6 bits (142), Expect = 9e-10
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 138 LGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
LG+ SD+S EEI+ Y+ L ++ HPDAN GD +EERF+AV +A+ +L
Sbjct: 15 LGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVL 62
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 57.5 bits (139), Expect = 2e-09
Identities = 23/51 (45%), Positives = 39/51 (76%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+EILG+ +++ EEI+ Y+ L KK+HPD N GD+ +E++F+ + +AY+IL
Sbjct: 8 YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEIL 58
>gnl|CDD|182712 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 56.7 bits (138), Expect = 3e-09
Identities = 21/52 (40%), Positives = 38/52 (73%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+E+LG+ ++S +EI+ Y+ L K+HPD N GD+ +EE+F+ + +AY++L
Sbjct: 7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLS 58
>gnl|CDD|184610 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 56.4 bits (136), Expect = 5e-09
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+++LG+ D++ EI+ Y+ L +++HPDAN GD +EERF+ + +AY +L
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVL 62
>gnl|CDD|172782 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 55.9 bits (135), Expect = 6e-09
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+EILG+ D+S EEI+ Y+ L K+HPD N GD+ +EE F+ +AY++L
Sbjct: 7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVL 57
>gnl|CDD|162815 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 55.7 bits (135), Expect = 8e-09
Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+EILG+ D+S EEI+ Y+ L KK+HPD N D+ +EE+F+ + +AY++L
Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRN-KDKEAEEKFKEINEAYEVL 52
>gnl|CDD|184605 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 54.9 bits (132), Expect = 1e-08
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+ ILG+ +SPEEI+ Y+ L K+HPD N GD +E+RF+ V +AY++L
Sbjct: 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVL 54
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 53.6 bits (129), Expect = 3e-08
Identities = 21/52 (40%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-SEERFQAVIQAYKIL 185
+EILG+ +++ EEI+ YK LVK+ HPD + +R +E++F+ + +AY++L
Sbjct: 7 YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVL 58
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 53.1 bits (127), Expect = 4e-08
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
++ILG+ ++ EEI+ Y+ L K+HPD N G++ SEE+F+ +AY+IL+
Sbjct: 7 YDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILR 58
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 50.6 bits (121), Expect = 3e-07
Identities = 20/52 (38%), Positives = 37/52 (71%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+E+LGL +S +EI+ ++ L K+HPD N G++ +EE+F+ + +AY++L
Sbjct: 7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLS 58
>gnl|CDD|184609 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 50.4 bits (121), Expect = 3e-07
Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+EILG+ D+ +E++ Y+ L +K+HPD N + G+E+RF+ + +AY++L
Sbjct: 6 YEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVL 55
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 49.8 bits (119), Expect = 5e-07
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+EILGL D+S E+I+ Y+ L K+HPD N + +EE+F+ + +AY +L
Sbjct: 8 YEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVL 57
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 49.7 bits (118), Expect = 5e-07
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
M+ + +EIL + S+ E I+ Y+ L K+HPD N GD+ +EE+F+ + +AY +L
Sbjct: 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVL 56
>gnl|CDD|172769 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 49.4 bits (118), Expect = 5e-07
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
M+ + +E+LG+ + +EI+ Y+ L K+HPD N ++ +EE F+ V +AY++L
Sbjct: 1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVL 56
>gnl|CDD|184607 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 49.4 bits (118), Expect = 6e-07
Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+EILG+ +++ EEI+ Y+ L +K+HPD N + +EE+F+ + +AY++L
Sbjct: 6 YEILGVSRNATQEEIKKAYRRLARKYHPDFN-KNPEAEEKFKEINEAYQVL 55
>gnl|CDD|172777 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 48.3 bits (115), Expect = 1e-06
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+LG+ ++ +EI+ Y+ ++HPD N GD+ +EE+F+ +AY +L
Sbjct: 8 YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58
>gnl|CDD|172789 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 48.2 bits (115), Expect = 1e-06
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
Q + +E+LG+ D+S +EI+ Y+ L ++HPD N + +E++F+ +AY++L+
Sbjct: 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLR 58
>gnl|CDD|184602 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+LG+ +S +EI+ Y+ L KK+HPD N + G++E+F+ + +AY++L
Sbjct: 7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEGADEKFKEISEAYEVL 56
>gnl|CDD|184598 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 47.8 bits (114), Expect = 2e-06
Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
++ LG+ D+S +EI+ Y+ L KK+HPD N + G+EE+++ V +AY+ L
Sbjct: 7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETL 56
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 47.3 bits (112), Expect = 2e-06
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
M+ + +EILGL +S +EI+ Y+ + K+HPD N G++ +E F+ +AY++L
Sbjct: 1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVL 56
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 46.8 bits (111), Expect = 3e-06
Identities = 20/57 (35%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-SEERFQAVIQAYKIL 185
M + ++ILG+ ++S E+I+ +++L KK HPD + G++ +EE+F+ + +AY++L
Sbjct: 1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVL 57
>gnl|CDD|184613 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 46.9 bits (111), Expect = 4e-06
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+ ILG+ ++S +EI+ +K L +K+HPD N G+EE+F+ + +AY +L
Sbjct: 7 YAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVL 56
>gnl|CDD|184608 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 44.9 bits (106), Expect = 1e-05
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+LG+ +S +EI+ Y+ L K+HPD N ++G+ E+F + +AY +L
Sbjct: 5 YELLGVSRTASADEIKSAYRKLALKYHPDRN-KEKGAAEKFAQINEAYAVL 54
>gnl|CDD|173334 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 43.7 bits (103), Expect = 3e-05
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+L L D + EI+ Y+ L KHHPD GGD E+F+ + +AY++L
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPD-KGGD---PEKFKEISRAYEVL 77
>gnl|CDD|184600 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 43.5 bits (103), Expect = 4e-05
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 137 ILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+LG+ ++S EI+ Y+ L ++ HPD N D ++E+F+ + AY++L
Sbjct: 8 LLGVSRNASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVL 55
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 43.3 bits (102), Expect = 4e-05
Identities = 18/51 (35%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+LG+ ++ +EI+ Y+ L +K+HPD + + G+EE+F+ + +AY +L
Sbjct: 8 YEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVL 57
>gnl|CDD|172784 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 42.6 bits (100), Expect = 6e-05
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+LG+ +S +EIR Y+ L K++HPD N + ++ + +A +L
Sbjct: 7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVL 56
>gnl|CDD|184606 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 40.0 bits (93), Expect = 4e-04
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+LG+ ++S +E++ Y+ L +K+HPD N +E++F+ V +AY L
Sbjct: 7 YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTL 56
>gnl|CDD|163547 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility.
Length = 871
Score = 39.0 bits (90), Expect = 7e-04
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
+E+LG+ D+ +EI+ ++ L KK+HPD N + F + +A +L
Sbjct: 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVL 54
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 38.8 bits (90), Expect = 8e-04
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPD-ANGGDRGSEERFQAVIQAYKILK 186
M + ++ILG+ +S +++ Y L K++HPD + D +E++F+ + AY +LK
Sbjct: 1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKD--AEKKFKEINAAYDVLK 56
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 37.5 bits (87), Expect = 0.002
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 130 MQF-NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188
M+ + + I+G+ + I+ Y+ L +K+HPD + + +E RF+ V +A+++L
Sbjct: 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDE 59
>gnl|CDD|173392 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 34.1 bits (78), Expect = 0.022
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 134 AFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGG 167
A++IL + +S E IR +K L+ ++HPD NGG
Sbjct: 67 AYKILNISPTASKERIREAHKQLMLRNHPD-NGG 99
>gnl|CDD|129797 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock.
Length = 157
Score = 31.0 bits (70), Expect = 0.21
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 149 IRGRYKDLVKKHHPDANGGDRGSEERFQAVI------QAYKILK 186
+ RY+DL +++HPD ++E+ AV QAY+ LK
Sbjct: 8 LSLRYQDLQRQYHPD-KFASGSAQEQLAAVQQSTTLNQAYQTLK 50
>gnl|CDD|181850 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 30.6 bits (70), Expect = 0.25
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPD 163
+A+++LG+ +EI+ Y+ L+ +HHPD
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
>gnl|CDD|168271 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 29.1 bits (65), Expect = 0.66
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 138 LGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVI 179
LG LS + IRGR K+L+ + GG++ S ER + V+
Sbjct: 415 LGSLSAAGDLSIRGRIKELINR------GGEKISPERVEGVL 450
>gnl|CDD|162977 TIGR02687, TIGR02687, conserved hypothetical protein TIGR02687.
Members of this family are uncharacterized proteins
sporadically distributed in bacteria and archaea, about
880 amino acids in length. This protein is repeatedly
found upstream of another uncharacterized protein of
about 470 amino acids in length, modeled by TIGR02688.
Length = 844
Score = 29.0 bits (65), Expect = 0.68
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER-FQAVIQAYKILKK 187
+ F A +++ D E IR + + + DA G + SEE F+AV + LKK
Sbjct: 547 GLAFKADDLMRYKRDEGRELIRDKRVIYIYHNKIDATGDKQSSEENVFEAVEETIVELKK 606
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 28.7 bits (65), Expect = 0.90
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 20/63 (31%)
Query: 133 NAFEI-LGLLSDSSPEEIRGRYKDLVKKHHPD--ANGGDRGSEERFQAVIQ------AYK 183
++I LL+ RY++L ++ HPD AN +R ER AV Q AY+
Sbjct: 11 ARYDIDTQLLAS--------RYQELQRQFHPDKFANASER---ERLLAVQQAATINDAYQ 59
Query: 184 ILK 186
LK
Sbjct: 60 TLK 62
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 28.6 bits (63), Expect = 0.98
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185
++ILG+ ++ +EI RY L + ++P G+ G +F+ + +AY+IL
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGF-HKFKKINEAYQIL 625
>gnl|CDD|140235 PTZ00208, PTZ00208, 65 kDa invariant surface glycoprotein;
Provisional.
Length = 436
Score = 27.2 bits (60), Expect = 2.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 141 LSDSSPE---EIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYK 183
LSDS E EI + KD + K P+A +E+ Q V +A K
Sbjct: 98 LSDSDTEKVKEIFEKAKDGIAKQLPEAKKAGEEAEKLHQEVKKAAK 143
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 26.7 bits (59), Expect = 3.4
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 147 EEIRGRYKDLVKKHHPD--ANGGDRGSE---ERFQAVIQAYKILK 186
+++ RY++L ++ HPD A+ +R ER ++ +AY+ LK
Sbjct: 21 DQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLK 65
>gnl|CDD|180165 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 26.7 bits (60), Expect = 3.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 69 YFLGLSDDEVGRYQKEGVTGERFTWTAHLYA 99
YFL + +G Y +TG R + LYA
Sbjct: 150 YFLSRAPGALGTYL--ALTGARISAADALYA 178
>gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional.
Length = 338
Score = 26.6 bits (59), Expect = 4.6
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 15/49 (30%)
Query: 153 YKDLVKKHHPDA---------------NGGDRGSEERFQAVIQAYKILK 186
Y D++ HPDA NGGD +E QA++ + I K
Sbjct: 100 YSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQK 148
>gnl|CDD|184630 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 440
Score = 25.9 bits (57), Expect = 5.8
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 85 GVTGERFTWTAHLYAE-RYPSNSSFFQDHRS---SYGHFADRP 123
G T E F T LY E Y S F R SY HF D P
Sbjct: 300 GETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLP 342
>gnl|CDD|180021 PRK05331, PRK05331, putative phosphate acyltransferase;
Provisional.
Length = 334
Score = 26.2 bits (59), Expect = 6.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 163 DANGGDRGSEERFQAVIQAYK 183
DA GGD G E +QA K
Sbjct: 7 DAMGGDFGPEVVVPGALQALK 27
>gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 26.2 bits (59), Expect = 6.1
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 169 RG-SEERFQAVIQAYKILKKSG 189
RG S E A+ +AYK+L +SG
Sbjct: 202 RGFSREEIHALRRAYKLLYRSG 223
>gnl|CDD|177441 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 26.1 bits (58), Expect = 6.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 149 IRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGFC 191
+R Y K++HPD GGD EE+ + + YK L++
Sbjct: 30 MRKAYLRKCKEYHPD-KGGD---EEKMKRLNSLYKKLQEGVKS 68
>gnl|CDD|177528 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 25.8 bits (57), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 149 IRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188
+R Y + HPD GGD EE+ + + YK ++S
Sbjct: 24 MRKAYLRKCLEFHPD-KGGD---EEKMKELNTLYKKFRES 59
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.137 0.427
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,256,696
Number of extensions: 202974
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 54
Length of query: 191
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,092,969
Effective search space: 421575807
Effective search space used: 421575807
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)