RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62] (191 letters) >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Score = 46.9 bits (111), Expect = 1e-06 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 125 HRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR---GSEERFQAVIQA 181 H V ++ +G+ +PE+++ Y+ V HPD G ++ F + A Sbjct: 26 HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDA 85 Query: 182 YKILKK 187 + + Sbjct: 86 WSEFEN 91 >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 Score = 45.0 bits (106), Expect = 5e-06 Identities = 22/54 (40%), Positives = 35/54 (64%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 + +EILG+ + EIR YK L K+HPD N GD+ +E +F+ + +AY++L Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57 >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Score = 44.7 bits (105), Expect = 5e-06 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 128 GSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD-RGSEERFQAVIQAYKILK 186 GS+ ++ E + + L K HPD N + + E F+ + L+ Sbjct: 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE 71 Query: 187 K 187 K Sbjct: 72 K 72 >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Score = 41.6 bits (97), Expect = 4e-05 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER------FQAVIQAY 182 +++ + + ILG ++ +++ +Y+ L+ +HPD D + F + QA+ Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72 Query: 183 KILK 186 KIL Sbjct: 73 KILG 76 >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 Score = 38.9 bits (90), Expect = 3e-04 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSE-----ERFQAVIQAYKIL 185 + F + GL + + R++DL +++HPD +E ++ + QA++ L Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61 Query: 186 K 186 + Sbjct: 62 R 62 >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 Score = 38.8 bits (90), Expect = 3e-04 Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 6/58 (10%) Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 E+L L ++ YK HPD GS Q + + K Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG----GSHALMQELNSLWGTFKTE 65 >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Score = 36.2 bits (83), Expect = 0.002 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 M + ++ LGL +S EEI+ Y+ ++HPD N +EE+F+ + +AY +L Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLS 56 >d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Canine parvovirus [TaxId: 10788]} Length = 548 Score = 29.5 bits (66), Expect = 0.19 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 38 GEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHL 97 G ++ P+ +G D + + Y G + G T ERFT+ AH Sbjct: 315 GPFKTPIAAGRGGAQ----TDENQAADGNPRYAFGRQHGQKTTT--TGETPERFTYIAHQ 368 Query: 98 YAERYPSNSSFFQDHRSSYGH 118 RYP + + Sbjct: 369 DTGRYPEGDWIQNINFNLPVT 389 >d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]} Length = 371 Score = 26.8 bits (59), Expect = 1.1 Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 3/60 (5%) Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYK 183 H F L++ S EE K +K + + + + I Sbjct: 303 SHAAAVEVLRGFL---RLANMSNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMN 359 >d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]} Length = 369 Score = 25.7 bits (56), Expect = 3.0 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%) Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158 + +G+ A + LL+ + R++ L Sbjct: 302 GYDLGASAIEA---ILLLARAMDPATAARWRGLCA 333 >d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} Length = 361 Score = 25.3 bits (55), Expect = 3.4 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%) Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158 DH VG + L+ +P +K + K Sbjct: 293 DHAVGHGIVASIV---RLAQFAPAPHAAAFKQIAK 324 >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 Score = 25.0 bits (53), Expect = 4.1 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 29 CQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKE 84 D Q I R + +E+ + K G F GL+ ++V R ++E Sbjct: 310 ELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK-QNGMFSFSGLTKEQVLRLREE 364 >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Score = 24.9 bits (54), Expect = 4.4 Identities = 7/27 (25%), Positives = 15/27 (55%) Query: 141 LSDSSPEEIRGRYKDLVKKHHPDANGG 167 L + +P E+ R+++L++ H G Sbjct: 65 LGNKTPVEVSHRFRELMQLFHTACESG 91 >d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Bacillus subtilis [TaxId: 1423]} Length = 334 Score = 24.6 bits (53), Expect = 5.0 Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 163 DANGGDRGSEERFQAVIQAYKILK 186 DA GGD + VI+ + Sbjct: 7 DAMGGDHAPKAVIDGVIKGIEAFD 30 >d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Enterococcus faecalis [TaxId: 1351]} Length = 329 Score = 24.6 bits (53), Expect = 6.0 Identities = 7/24 (29%), Positives = 11/24 (45%) Query: 163 DANGGDRGSEERFQAVIQAYKILK 186 DA GGD + + V+ A + Sbjct: 6 DAMGGDNAPQAIVEGVMLAKQDFP 29 >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Score = 24.4 bits (53), Expect = 6.2 Identities = 8/28 (28%), Positives = 12/28 (42%) Query: 137 ILGLLSDSSPEEIRGRYKDLVKKHHPDA 164 LG S+ IR + LV+ + D Sbjct: 92 FLGYTSNLISSGIRETIRYLVQHNMVDV 119 >d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]} Length = 371 Score = 24.1 bits (52), Expect = 8.7 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%) Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158 H + ++D S E + R + LVK Sbjct: 302 GHVAA---VEVLRGIHRIADMSEGETKQRLQSLVK 333 >d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Score = 24.1 bits (52), Expect = 8.9 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%) Query: 147 EEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGFC 191 EE +VKKH P+ G G+ F +I K++ + +C Sbjct: 35 EEQSE---GIVKKHKPEIKGNMSGN---FTYIID--KLIPNTNYC 71 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.137 0.427 Gapped Lambda K H 0.267 0.0431 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 773,727 Number of extensions: 36888 Number of successful extensions: 119 Number of sequences better than 10.0: 1 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 22 Length of query: 191 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 111 Effective length of database: 1,309,196 Effective search space: 145320756 Effective search space used: 145320756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.8 bits)