RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ
family protein [Candidatus Liberibacter asiaticus str. psy62]
         (191 letters)



>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 98

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 125 HRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR---GSEERFQAVIQA 181
           H V       ++ +G+    +PE+++  Y+  V   HPD   G      ++  F  +  A
Sbjct: 26  HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDA 85

Query: 182 YKILKK 187
           +   + 
Sbjct: 86  WSEFEN 91


>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
           {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
           + +EILG+   +   EIR  YK L  K+HPD N GD+ +E +F+ + +AY++L 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57


>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 128 GSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD-RGSEERFQAVIQAYKILK 186
           GS+      ++         E +   + L  K HPD N  +   + E F+ +      L+
Sbjct: 12  GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE 71

Query: 187 K 187
           K
Sbjct: 72  K 72


>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
           (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 94

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER------FQAVIQAY 182
           +++ + + ILG    ++  +++ +Y+ L+  +HPD    D  +         F  + QA+
Sbjct: 13  TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 183 KILK 186
           KIL 
Sbjct: 73  KILG 76


>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
           {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSE-----ERFQAVIQAYKIL 185
           + F + GL        + +  R++DL +++HPD       +E     ++   + QA++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 186 K 186
           +
Sbjct: 62  R 62


>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
           {Murine polyomavirus [TaxId: 10634]}
          Length = 79

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 6/58 (10%)

Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188
              E+L L          ++  YK      HPD      GS    Q +   +   K  
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG----GSHALMQELNSLWGTFKTE 65


>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 77

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
           M  + ++ LGL   +S EEI+  Y+    ++HPD N     +EE+F+ + +AY +L 
Sbjct: 1   MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLS 56


>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Canine parvovirus [TaxId: 10788]}
          Length = 548

 Score = 29.5 bits (66), Expect = 0.19
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 38  GEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHL 97
           G ++ P+ +G          D  +  +    Y  G    +       G T ERFT+ AH 
Sbjct: 315 GPFKTPIAAGRGGAQ----TDENQAADGNPRYAFGRQHGQKTTT--TGETPERFTYIAHQ 368

Query: 98  YAERYPSNSSFFQDHRSSYGH 118
              RYP        + +    
Sbjct: 369 DTGRYPEGDWIQNINFNLPVT 389


>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 371

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 3/60 (5%)

Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYK 183
            H         F     L++ S EE     K  +K         +  +  +  + I    
Sbjct: 303 SHAAAVEVLRGFL---RLANMSNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMN 359


>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
           aurescens [TaxId: 43663]}
          Length = 369

 Score = 25.7 bits (56), Expect = 3.0
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158
            + +G+    A   + LL+ +       R++ L  
Sbjct: 302 GYDLGASAIEA---ILLLARAMDPATAARWRGLCA 333


>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1
           [TaxId: 84635]}
          Length = 361

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158
           DH VG     +      L+  +P      +K + K
Sbjct: 293 DHAVGHGIVASIV---RLAQFAPAPHAAAFKQIAK 324


>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
           {Escherichia coli [TaxId: 562]}
          Length = 396

 Score = 25.0 bits (53), Expect = 4.1
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 29  CQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKE 84
              D  Q I   R    +  +E+        + K   G   F GL+ ++V R ++E
Sbjct: 310 ELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK-QNGMFSFSGLTKEQVLRLREE 364


>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 95

 Score = 24.9 bits (54), Expect = 4.4
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 141 LSDSSPEEIRGRYKDLVKKHHPDANGG 167
           L + +P E+  R+++L++  H     G
Sbjct: 65  LGNKTPVEVSHRFRELMQLFHTACESG 91


>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
           PlsX {Bacillus subtilis [TaxId: 1423]}
          Length = 334

 Score = 24.6 bits (53), Expect = 5.0
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 163 DANGGDRGSEERFQAVIQAYKILK 186
           DA GGD   +     VI+  +   
Sbjct: 7   DAMGGDHAPKAVIDGVIKGIEAFD 30


>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
           PlsX {Enterococcus faecalis [TaxId: 1351]}
          Length = 329

 Score = 24.6 bits (53), Expect = 6.0
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 163 DANGGDRGSEERFQAVIQAYKILK 186
           DA GGD   +   + V+ A +   
Sbjct: 6   DAMGGDNAPQAIVEGVMLAKQDFP 29


>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 361

 Score = 24.4 bits (53), Expect = 6.2
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 137 ILGLLSDSSPEEIRGRYKDLVKKHHPDA 164
            LG  S+     IR   + LV+ +  D 
Sbjct: 92  FLGYTSNLISSGIRETIRYLVQHNMVDV 119


>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 371

 Score = 24.1 bits (52), Expect = 8.7
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158
            H            +  ++D S  E + R + LVK
Sbjct: 302 GHVAA---VEVLRGIHRIADMSEGETKQRLQSLVK 333


>d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta
           chain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 24.1 bits (52), Expect = 8.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 147 EEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGFC 191
           EE       +VKKH P+  G   G+   F  +I   K++  + +C
Sbjct: 35  EEQSE---GIVKKHKPEIKGNMSGN---FTYIID--KLIPNTNYC 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 773,727
Number of extensions: 36888
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 22
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)