BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62] (191 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 191 Score = 400 bits (1027), Expect = e-114, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MKLDSKYFDRIRTRKKRKKNAPSPKSSICQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHV 60 MKLDSKYFDRIRTRKKRKKNAPSPKSSICQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHV Sbjct: 1 MKLDSKYFDRIRTRKKRKKNAPSPKSSICQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHV 60 Query: 61 KKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFA 120 KKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFA Sbjct: 61 KKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFA 120 Query: 121 DRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQ 180 DRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQ Sbjct: 121 DRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQ 180 Query: 181 AYKILKKSGFC 191 AYKILKKSGFC Sbjct: 181 AYKILKKSGFC 191 >gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 40.4 bits (93), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 35/52 (67%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 +++LG+ +++ +++ ++ L K+HPD N D ++E+F + +AY++L+ Sbjct: 7 YQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLR 58 >gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62] Length = 581 Score = 26.2 bits (56), Expect = 0.36, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVI-------QAYKILKK 187 F+I+ ++++S ++IR + + +H P G +E F AV+ Q Y ++K Sbjct: 180 FKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEK 239 Query: 188 S 188 S Sbjct: 240 S 240 >gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus str. psy62] Length = 356 Score = 23.5 bits (49), Expect = 2.6, Method: Compositional matrix adjust. Identities = 10/35 (28%), Positives = 19/35 (54%) Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158 D+ ++ AF ++ D++ E I RY D++K Sbjct: 128 DYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK 162 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 21.9 bits (45), Expect = 7.4, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Query: 43 PVGSGAEEQFFLFCLDHVKKYNKGYNYFLG--LSDD 76 P GSG + + C++H++K+ G G L+DD Sbjct: 51 PSGSG--KSTLIRCINHIEKHQAGEIIINGIPLNDD 84 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.137 0.427 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,704 Number of Sequences: 1233 Number of extensions: 5693 Number of successful extensions: 10 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 7 length of query: 191 length of database: 328,796 effective HSP length: 69 effective length of query: 122 effective length of database: 243,719 effective search space: 29733718 effective search space used: 29733718 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 36 (18.5 bits)