BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ
family protein [Candidatus Liberibacter asiaticus str. psy62]
         (191 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 191

 Score =  400 bits (1027), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MKLDSKYFDRIRTRKKRKKNAPSPKSSICQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHV 60
           MKLDSKYFDRIRTRKKRKKNAPSPKSSICQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHV
Sbjct: 1   MKLDSKYFDRIRTRKKRKKNAPSPKSSICQWDNCQCIGEYRAPVGSGAEEQFFLFCLDHV 60

Query: 61  KKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFA 120
           KKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFA
Sbjct: 61  KKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFA 120

Query: 121 DRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQ 180
           DRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQ
Sbjct: 121 DRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQ 180

Query: 181 AYKILKKSGFC 191
           AYKILKKSGFC
Sbjct: 181 AYKILKKSGFC 191


>gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 384

 Score = 40.4 bits (93), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 35/52 (67%)

Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
           +++LG+  +++  +++  ++ L  K+HPD N  D  ++E+F  + +AY++L+
Sbjct: 7   YQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLR 58


>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 581

 Score = 26.2 bits (56), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVI-------QAYKILKK 187
           F+I+  ++++S ++IR   +  + +H P       G +E F AV+       Q Y  ++K
Sbjct: 180 FKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEK 239

Query: 188 S 188
           S
Sbjct: 240 S 240


>gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 356

 Score = 23.5 bits (49), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 124 DHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVK 158
           D+   ++   AF    ++ D++ E I  RY D++K
Sbjct: 128 DYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK 162


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 257

 Score = 21.9 bits (45), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 43 PVGSGAEEQFFLFCLDHVKKYNKGYNYFLG--LSDD 76
          P GSG  +   + C++H++K+  G     G  L+DD
Sbjct: 51 PSGSG--KSTLIRCINHIEKHQAGEIIINGIPLNDD 84


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,704
Number of Sequences: 1233
Number of extensions: 5693
Number of successful extensions: 10
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 191
length of database: 328,796
effective HSP length: 69
effective length of query: 122
effective length of database: 243,719
effective search space: 29733718
effective search space used: 29733718
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)