Query gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs 105 out of 1502
Neff 5.8
Searched_HMMs 33803
Date Wed Jun 1 15:39:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780586.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1v60_A BOLA1, riken cDNA 1810 100.0 2.5E-33 7.3E-38 200.8 9.3 93 3-100 22-114 (123)
2 >2dhm_A Protein BOLA; stationa 100.0 2.8E-33 8.1E-38 200.5 8.6 92 4-100 6-97 (107)
3 >2kdn_A Putative uncharacteriz 100.0 1.4E-29 4.3E-34 180.3 10.6 86 3-100 20-105 (108)
4 >1v9j_A BOLA-like protein rike 100.0 2.7E-29 8.1E-34 178.8 6.3 87 3-100 26-112 (113)
5 >1ny8_A Protein YRBA; structur 99.9 1.9E-27 5.6E-32 168.9 6.3 82 4-100 3-85 (97)
6 >1xs3_A Hypothetical protein X 99.9 2.5E-23 7.3E-28 146.5 4.9 72 9-94 8-79 (80)
7 >2p2e_A Putative Fe-S biosynth 35.0 34 0.001 15.7 3.5 51 1-57 3-57 (128)
8 >1ylq_A Putative nucleotidyltr 34.9 34 0.001 15.7 8.9 82 7-100 2-84 (96)
9 >3bej_E Nuclear receptor coact 17.9 73 0.0022 13.9 2.0 17 61-77 6-22 (26)
10 >1xhj_A Nitrogen fixation prot 16.4 80 0.0024 13.7 3.7 26 4-29 54-80 (88)
No 1
>>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=100.00 E-value=2.5e-33 Score=200.76 Aligned_cols=93 Identities=33% Similarity=0.442 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55141999999999841995179999506568887777789985089999982034799888999999999999833782
Q gi|254780586|r 3 ICHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEEL 82 (101)
Q Consensus 3 i~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~i 82 (101)
...|+++++|+++|+..|+|.+++|+|+|++|+||.| +++||+|+|||+.|+|+++|+|||+||++|+++|+++|
T Consensus 22 ~~~~~~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g-----~~~Hf~i~IVS~~F~g~s~v~rHr~Vy~~L~~el~~~I 96 (123)
T 1v60_A 22 AAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPV 96 (123)
T ss_dssp SSSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTT-----CCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 5456699999999985089847999977855466689-----98689999997864798789999999999999974897
Q ss_pred EEEEEECCCHHHHHHHHC
Q ss_conf 287776076899998533
Q gi|254780586|r 83 HALSIEAFSPDEKHTLKN 100 (101)
Q Consensus 83 HAlsik~~tp~E~~~~k~ 100 (101)
|||+|+||||+||++.+.
T Consensus 97 HALsikt~tp~Ew~~~~~ 114 (123)
T 1v60_A 97 HALAIQAKTPAQWRENPQ 114 (123)
T ss_dssp SEEEEEEECTTTTTTCCC
T ss_pred CEEEEEECCHHHHHHCCC
T ss_conf 436878189999971799
No 2
>>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} (A:)
Probab=100.00 E-value=2.8e-33 Score=200.50 Aligned_cols=92 Identities=34% Similarity=0.487 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 51419999999998419951799995065688877777899850899999820347998889999999999998337822
Q gi|254780586|r 4 CHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELH 83 (101)
Q Consensus 4 ~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iH 83 (101)
..|+..++|+++|+..|+|.+++|+|+|++|+||.| +++||+|+|||+.|+|+++|+|||+||++|+++|+++||
T Consensus 6 ~~m~~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g-----~~~Hf~v~IVS~~F~G~s~v~rHrlVy~~L~~el~~~IH 80 (107)
T 2dhm_A 6 SGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVH 80 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCC-----SCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 667799999999983189866999978776568899-----876699999705414888999999999999999728975
Q ss_pred EEEEECCCHHHHHHHHC
Q ss_conf 87776076899998533
Q gi|254780586|r 84 ALSIEAFSPDEKHTLKN 100 (101)
Q Consensus 84 Alsik~~tp~E~~~~k~ 100 (101)
||+|+|+||+||++.+.
T Consensus 81 ALsi~t~Tp~Ew~~~~~ 97 (107)
T 2dhm_A 81 ALALHTYTIKEWEGLQD 97 (107)
T ss_dssp CCEEEEECHHHHHTSSC
T ss_pred EEEEEECCHHHHHHCCC
T ss_conf 25878389999987379
No 3
>>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} (A:)
Probab=99.96 E-value=1.4e-29 Score=180.33 Aligned_cols=86 Identities=29% Similarity=0.398 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55141999999999841995179999506568887777789985089999982034799888999999999999833782
Q gi|254780586|r 3 ICHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEEL 82 (101)
Q Consensus 3 i~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~i 82 (101)
..+|...++|+++|+..|+|.+++|+|+| +++++||+|+|||+.|.|+++|+|||+||++|+++|++ |
T Consensus 20 ~~~~~~~~~I~~~L~~~l~~~~i~V~d~S-----------~g~g~hf~v~VVS~~F~G~s~v~RHr~V~~~L~e~i~~-i 87 (108)
T 2kdn_A 20 QGHMCIQKVIEDKLSSALKPTFLELVDKS-----------CGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-I 87 (108)
T ss_dssp TTSCSHHHHHHHHHHHHHCCSEEEEEECC-----------CSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-C
T ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEEECC-----------CCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHC-C
T ss_conf 45653999999999855899768999789-----------99876799999827877996899999999999999712-4
Q ss_pred EEEEEECCCHHHHHHHHC
Q ss_conf 287776076899998533
Q gi|254780586|r 83 HALSIEAFSPDEKHTLKN 100 (101)
Q Consensus 83 HAlsik~~tp~E~~~~k~ 100 (101)
|||+|+||||+||++++.
T Consensus 88 HAlsi~t~tp~Ew~~~~~ 105 (108)
T 2kdn_A 88 HAFSMKCHTPLEYDKLKS 105 (108)
T ss_dssp SCEEEEEECHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHH
T ss_conf 104878089999998763
No 4
>>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} (A:)
Probab=99.95 E-value=2.7e-29 Score=178.83 Aligned_cols=87 Identities=22% Similarity=0.349 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55141999999999841995179999506568887777789985089999982034799888999999999999833782
Q gi|254780586|r 3 ICHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEEL 82 (101)
Q Consensus 3 i~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~i 82 (101)
-..|...++|+++|+..|+|..++|+|+|+. +|++||.|+|||+.|+|+++|+|||+||++|+++|+ +|
T Consensus 26 ~~~~~~~~~I~~~L~~~l~~~~i~V~d~S~~----------g~g~hf~i~VvS~~F~Gks~v~rhr~Vy~~L~~~i~-~i 94 (113)
T 1v9j_A 26 ATMELSADYLREKLRQDLEAEHVEVEDTTLN----------RCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HI 94 (113)
T ss_dssp SSSSSCHHHHHHHHHHHHTCSEEEEEECCSS----------SSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GC
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEECCCC----------CCCEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHH-CC
T ss_conf 7676589999999983489827999967789----------887379999985112688525889928999999973-14
Q ss_pred EEEEEECCCHHHHHHHHC
Q ss_conf 287776076899998533
Q gi|254780586|r 83 HALSIEAFSPDEKHTLKN 100 (101)
Q Consensus 83 HAlsik~~tp~E~~~~k~ 100 (101)
|||+|+|+||+||++++.
T Consensus 95 HAlsikt~Tp~Ew~~~~~ 112 (113)
T 1v9j_A 95 HAFEQKTLTPEQWTRQRR 112 (113)
T ss_dssp SSEEEEEECHHHHHHSCC
T ss_pred EEEEEEECCHHHHHHHHC
T ss_conf 204878289999987636
No 5
>>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=99.94 E-value=1.9e-27 Score=168.88 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCC-C
Q ss_conf 514199999999984199517999950656888777778998508999998203479988899999999999983378-2
Q gi|254780586|r 4 CHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEE-L 82 (101)
Q Consensus 4 ~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~-i 82 (101)
.+|...++|+++|++.|++..++|+|+ ++||+|+|||+.|+|+++|+|||+||++|+++|+++ |
T Consensus 3 ~~~~~~~~I~~~L~~~l~~~~v~V~gd---------------~~hf~i~IvS~~F~Gks~v~RhrlVy~~L~~~i~~g~I 67 (97)
T 1ny8_A 3 EDPMENNEIQSVLMNALSLQEVHVSGD---------------GSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRI 67 (97)
T ss_dssp CCCCCCHHHHHHHHHHHCCSEEEEEES---------------SSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECC---------------CCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 375789999999995399818999689---------------84899999807768998899999999999998658972
Q ss_pred EEEEEECCCHHHHHHHHC
Q ss_conf 287776076899998533
Q gi|254780586|r 83 HALSIEAFSPDEKHTLKN 100 (101)
Q Consensus 83 HAlsik~~tp~E~~~~k~ 100 (101)
|||+|+||||+||++++.
T Consensus 68 HAlsi~t~tp~Ew~~~~~ 85 (97)
T 1ny8_A 68 HAVSIKAYTPAEWARDRK 85 (97)
T ss_dssp SEEEEEECCHHHHHHHHH
T ss_pred EEEEEEECCHHHHHHHCC
T ss_conf 433868389999998600
No 6
>>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} (A:)
Probab=99.88 E-value=2.5e-23 Score=146.54 Aligned_cols=72 Identities=29% Similarity=0.494 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999841995179999506568887777789985089999982034799888999999999999833782287776
Q gi|254780586|r 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSIE 88 (101)
Q Consensus 9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsik 88 (101)
.+.|+.+|++.|++.++.|.| +|++||+|+|||+.|+|+|+|+|||+||++|+++|+++||||+|+
T Consensus 8 ~~~i~~~l~s~l~~~~v~v~~--------------g~g~Hf~v~IvS~~F~g~s~v~rhrlVy~~L~~~l~~~IHAlsi~ 73 (80)
T 1xs3_A 8 AETIRKLIESGLPEARVDVQG--------------EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLK 73 (80)
T ss_dssp HHHHHHHHHHHSSSCEEEEES--------------CTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEC--------------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999998349997899984--------------999879999981665889888999999999999876998626878
Q ss_pred CCCHHH
Q ss_conf 076899
Q gi|254780586|r 89 AFSPDE 94 (101)
Q Consensus 89 ~~tp~E 94 (101)
|+||+|
T Consensus 74 t~tp~E 79 (80)
T 1xs3_A 74 TLTPDE 79 (80)
T ss_dssp EECGGG
T ss_pred ECCCCC
T ss_conf 378454
No 7
>>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} (A:)
Probab=34.96 E-value=34 Score=15.71 Aligned_cols=51 Identities=14% Similarity=-0.010 Sum_probs=26.2
Q ss_pred CCCCCCHHH-HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCC---CEEEEEEEEEHH
Q ss_conf 985514199-999999984199517999950656888777778998---508999998203
Q gi|254780586|r 1 MQICHTSLI-NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLG---ETHIRIKIVSPT 57 (101)
Q Consensus 1 M~i~~~~~~-~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~---~sHf~i~IvS~~ 57 (101)
|.|+.++-+ ++|+.++...=....+.+.|-+ ..++.|++ +..|.+.+|+..
T Consensus 3 M~ItiTe~A~~~l~~~~~~~~~~l~L~~ddG~------g~~s~gc~C~~g~~y~l~~v~e~ 57 (128)
T 2p2e_A 3 LKITVTDDAAKKLQRYTDDSNAVLLLDFDDGV------GALSKVGVCSLNSDFRILVVSKD 57 (128)
T ss_dssp CEEEECHHHHHHHHHHHTCTTEEEEEEECSSC------SGGGGSSCCCCSCCEEEEEEETT
T ss_pred EEEEECHHHHHHHHHHHCCCCCEEEEEECCCC------CCCCCCCCCCCCCEEEEEEECCC
T ss_conf 89998999999999864767866999984898------86666762013889899998177
No 8
>>1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} (A:)
Probab=34.90 E-value=34 Score=15.71 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC-CCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 19999999998419951799995065688877777899-85089999982034799888999999999999833782287
Q gi|254780586|r 7 SLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGL-GETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHAL 85 (101)
Q Consensus 7 ~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~-~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAl 85 (101)
...+.|.+.+++.+++..+-+.. | .+-...+ ..|=+-+.|+.+...+. -.+-++....+...+. .-+
T Consensus 2 e~l~~i~~~~~~~~~~~~v~LFG-S------~ArG~~~~~~SDiDilVv~~~~~~~--~~~~~~~~~~~~~~~~---~~v 69 (96)
T 1ylq_A 2 GHMKEIKEITKKDVQDAEIYLYG-S------VVEGDYSIGLSDIDVAIVSDVFEDR--NRKLEFFGKITKKFFD---SPF 69 (96)
T ss_dssp CHHHHHHHHHHHHCTTCEEEEES-H------HHHCCSSSCCCSEEEEEECGGGGSH--HHHHHHHHHHHHHTTT---CSE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC-C------EECCCCCCCCCCCEEEEEECCCCCH--HHHHHHHHHHHHHHCC---CCE
T ss_conf 58999999999868995899996-1------8837987898842799997788887--8899999999997479---985
Q ss_pred EEECCCHHHHHHHHC
Q ss_conf 776076899998533
Q gi|254780586|r 86 SIEAFSPDEKHTLKN 100 (101)
Q Consensus 86 sik~~tp~E~~~~k~ 100 (101)
.+..+|++||+..++
T Consensus 70 d~~~~t~~e~~~~~~ 84 (96)
T 1ylq_A 70 EFHILTKKEWKMSKR 84 (96)
T ss_dssp EEEEECHHHHHHHHT
T ss_pred EEEECCHHHHHHHHH
T ss_conf 999868999999999
No 9
>>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 2hfp_B* 1k7l_B* (E:)
Probab=17.91 E-value=73 Score=13.90 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 98889999999999998
Q gi|254780586|r 61 ISKTFRHRKIYDLLHKE 77 (101)
Q Consensus 61 ~s~i~rHr~V~~~L~~e 77 (101)
-|+-+||++...+|.+-
T Consensus 6 ~sl~erhkilhrllqe~ 22 (26)
T 3bej_E 6 SSLTERHKILHRLLQEG 22 (26)
T ss_pred CHHHHHHHHHHHHHHCC
T ss_conf 02889999999999826
No 10
>>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structure initiative, NESG, PSI; NMR {Staphylococcus epidermidis atcc 12228} (A:)
Probab=16.41 E-value=80 Score=13.70 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHCCCC-EEEEEE
Q ss_conf 51419999999998419951-799995
Q gi|254780586|r 4 CHTSLINRITEKIRIALSPD-DLQVIN 29 (101)
Q Consensus 4 ~~~~~~~~I~~kL~~~l~~~-~i~V~D 29 (101)
+.+++.+-|+..|+..+++. .+...+
T Consensus 54 s~~Tl~~~Ie~~L~~~ip~~~~V~~v~ 80 (88)
T 1xhj_A 54 STITLKAGIERALHEEVPGVIEVEQVF 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 899999999999998789977799975
Done!