Query gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 101 No_of_seqs 105 out of 1502 Neff 5.8 Searched_HMMs 23785 Date Tue May 31 18:31:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780586.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2dhm_A Protein BOLA; stationar 100.0 2.6E-34 1.1E-38 205.2 8.8 94 2-100 4-97 (107) 2 1v60_A BOLA1, riken cDNA 18100 100.0 1.2E-32 4.9E-37 196.3 9.5 90 5-99 24-113 (123) 3 2kdn_A Putative uncharacterize 100.0 3.4E-30 1.4E-34 182.9 10.3 86 3-100 20-105 (108) 4 3o2e_A BOLA-like protein; ssgc 100.0 2.3E-29 9.5E-34 178.5 8.5 85 4-100 20-104 (105) 5 1v9j_A BOLA-like protein riken 100.0 3.1E-29 1.3E-33 177.7 6.2 85 5-100 27-112 (113) 6 1ny8_A Protein YRBA; structure 99.9 1.1E-25 4.6E-30 158.5 7.4 80 4-99 4-84 (97) 7 1xs3_A Hypothetical protein XC 99.9 1.6E-24 6.9E-29 152.1 4.8 72 9-94 8-79 (80) 8 2kz0_A BOLA family protein; BO 99.8 1.9E-21 7.8E-26 135.6 5.5 69 8-91 7-75 (76) 9 1ylq_A Putative nucleotidyltra 95.8 0.055 2.3E-06 30.0 8.6 80 9-100 4-84 (96) 10 2rff_A Putative nucleotidyltra 72.7 1.7 7.1E-05 22.0 2.3 77 10-100 20-97 (111) 11 2a5j_A RAS-related protein RAB 29.1 28 0.0012 15.3 2.4 41 30-71 3-43 (191) No 1 >2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} Probab=100.00 E-value=2.6e-34 Score=205.24 Aligned_cols=94 Identities=33% Similarity=0.467 Sum_probs=88.8 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 85514199999999984199517999950656888777778998508999998203479988899999999999983378 Q gi|254780586|r 2 QICHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEE 81 (101) Q Consensus 2 ~i~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~ 81 (101) +.+.|.+.++|+++|++.|+|.+++|+|+|++|+||.| +++||+|+|||+.|.|+++|+|||+||++|+++|+++ T Consensus 4 ~~~~m~~~~~I~~~L~~~~~~~~l~V~D~S~~H~~h~g-----~~~Hf~i~IvS~~F~g~s~i~rHR~V~~~L~~ei~~~ 78 (107) T 2dhm_A 4 GSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTT 78 (107) T ss_dssp SSCCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCC-----SCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTT T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 66777899999999984189857999978776668899-----9727999998675368878999999999999997179 Q ss_pred CEEEEEECCCHHHHHHHHC Q ss_conf 2287776076899998533 Q gi|254780586|r 82 LHALSIEAFSPDEKHTLKN 100 (101) Q Consensus 82 iHAlsik~~tp~E~~~~k~ 100 (101) ||||+|+|+||+||++.++ T Consensus 79 IHALsik~~T~~Ew~~~~~ 97 (107) T 2dhm_A 79 VHALALHTYTIKEWEGLQD 97 (107) T ss_dssp CCCCEEEEECHHHHHTSSC T ss_pred CCEEEEEECCHHHHHHCCC T ss_conf 7536878389999997379 No 2 >1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Probab=99.98 E-value=1.2e-32 Score=196.28 Aligned_cols=90 Identities=34% Similarity=0.455 Sum_probs=84.2 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 14199999999984199517999950656888777778998508999998203479988899999999999983378228 Q gi|254780586|r 5 HTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHA 84 (101) Q Consensus 5 ~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHA 84 (101) .-++++.|+++|+++|+|..|+|+|+|++|+||.| +++||+|+|||+.|+|+++|+|||+||++|++||+++||| T Consensus 24 ~gpie~~I~~kL~~~l~p~~leV~D~S~~H~~h~g-----~~sHf~i~IvS~~F~g~s~i~rHr~Vy~~L~~ei~~~iHA 98 (123) T 1v60_A 24 AGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHA 98 (123) T ss_dssp SCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTT-----CCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCSE T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE T ss_conf 66499999999985089837999978866476789-----9857999998775479878999999999999997489733 Q ss_pred EEEECCCHHHHHHHH Q ss_conf 777607689999853 Q gi|254780586|r 85 LSIEAFSPDEKHTLK 99 (101) Q Consensus 85 lsik~~tp~E~~~~k 99 (101) |+|+|+||+||++.+ T Consensus 99 Lsik~~Tp~Ew~~~~ 113 (123) T 1v60_A 99 LAIQAKTPAQWRENP 113 (123) T ss_dssp EEEEEECTTTTTTCC T ss_pred EEEEECCHHHHHHCC T ss_conf 687818999997179 No 3 >2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Probab=99.96 E-value=3.4e-30 Score=182.92 Aligned_cols=86 Identities=29% Similarity=0.401 Sum_probs=79.9 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 55141999999999841995179999506568887777789985089999982034799888999999999999833782 Q gi|254780586|r 3 ICHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEEL 82 (101) Q Consensus 3 i~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~i 82 (101) ...|++.+.|+++|.++|+|..++|+|+|+ ++++||+|+|||+.|.|+++|+|||+||++|+++|+ +| T Consensus 20 ~~~M~i~~~I~~kL~~~l~p~~leV~D~S~-----------g~~~Hf~v~IvS~~F~g~s~i~RHR~Vy~~L~ee~~-~I 87 (108) T 2kdn_A 20 QGHMCIQKVIEDKLSSALKPTFLELVDKSC-----------GCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ-NI 87 (108) T ss_dssp TTSCSHHHHHHHHHHHHHCCSEEEEEECCC-----------SSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG-GC T ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEEECCC-----------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CC T ss_conf 456539999999998558997689997899-----------987679999982787799689999999999999971-24 Q ss_pred EEEEEECCCHHHHHHHHC Q ss_conf 287776076899998533 Q gi|254780586|r 83 HALSIEAFSPDEKHTLKN 100 (101) Q Consensus 83 HAlsik~~tp~E~~~~k~ 100 (101) |||+|+|+||+||+++++ T Consensus 88 HALsikt~Tp~Ew~k~~~ 105 (108) T 2kdn_A 88 HAFSMKCHTPLEYDKLKS 105 (108) T ss_dssp SCEEEEEECHHHHHHHHH T ss_pred CCEEEEECCHHHHHHHHH T ss_conf 104878089999998763 No 4 >3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Probab=99.96 E-value=2.3e-29 Score=178.46 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=77.9 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCE Q ss_conf 51419999999998419951799995065688877777899850899999820347998889999999999998337822 Q gi|254780586|r 4 CHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELH 83 (101) Q Consensus 4 ~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iH 83 (101) ..|...+.|+++|+.+|+|.+++|+|+|+ ++++||+|+|||+.|+|+++|+|||+||++|+++|++ || T Consensus 20 ~~m~~~~~Ie~kL~~~l~~~~l~V~D~S~-----------g~gsHf~i~IvS~~F~g~s~v~rhR~V~~~L~eei~~-IH 87 (105) T 3o2e_A 20 GSMVSKSIVEERLRSMLSPQFLKVTDNSG-----------GCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQ-IH 87 (105) T ss_dssp CCCCCHHHHHHHHHHHHCCSEEEEEECCB-----------TTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGGG-EE T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCC-----------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH-CC T ss_conf 75523999999998448984799998789-----------9853489999846768997899999999999999850-31 Q ss_pred EEEEECCCHHHHHHHHC Q ss_conf 87776076899998533 Q gi|254780586|r 84 ALSIEAFSPDEKHTLKN 100 (101) Q Consensus 84 Alsik~~tp~E~~~~k~ 100 (101) ||+|+|+||+||+++.. T Consensus 88 Alsikt~Tp~Ew~~k~~ 104 (105) T 3o2e_A 88 AFTMKCLTPGEWEAKNR 104 (105) T ss_dssp EEEEEEECHHHHHHTTC T ss_pred CEEEEECCHHHHHHCCC T ss_conf 32777099999986419 No 5 >1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Probab=99.95 E-value=3.1e-29 Score=177.70 Aligned_cols=85 Identities=24% Similarity=0.415 Sum_probs=77.8 Q ss_pred CCHH-HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCE Q ss_conf 1419-999999998419951799995065688877777899850899999820347998889999999999998337822 Q gi|254780586|r 5 HTSL-INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELH 83 (101) Q Consensus 5 ~~~~-~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iH 83 (101) .|.+ .+.|+++|++.|+|.+|+|+|+|+.|. ++||+|+|||+.|.|+++|+|||+||++|+++|+ +|| T Consensus 27 ~m~~~~e~I~~kL~~~l~p~~leV~DeS~~h~----------G~Hf~i~IvS~~F~g~s~i~RHR~V~~~L~~~i~-~IH 95 (113) T 1v9j_A 27 TMELSADYLREKLRQDLEAEHVEVEDTTLNRC----------ATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIH 95 (113) T ss_dssp SSSSCHHHHHHHHHHHHTCSEEEEEECCSSSS----------CCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GCS T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC----------CCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CCE T ss_conf 67658999999998448981899997878988----------8279999971787799668999999999999972-250 Q ss_pred EEEEECCCHHHHHHHHC Q ss_conf 87776076899998533 Q gi|254780586|r 84 ALSIEAFSPDEKHTLKN 100 (101) Q Consensus 84 Alsik~~tp~E~~~~k~ 100 (101) ||+|+||||+||++++. T Consensus 96 ALsikt~Tp~Ew~~~~~ 112 (113) T 1v9j_A 96 AFEQKTLTPEQWTRQRR 112 (113) T ss_dssp SEEEEEECHHHHHHSCC T ss_pred EEEEEECCHHHHHHHHC T ss_conf 04878189999998635 No 6 >1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Probab=99.92 E-value=1.1e-25 Score=158.48 Aligned_cols=80 Identities=26% Similarity=0.410 Sum_probs=71.4 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCC-CC Q ss_conf 51419999999998419951799995065688877777899850899999820347998889999999999998337-82 Q gi|254780586|r 4 CHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKE-EL 82 (101) Q Consensus 4 ~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~-~i 82 (101) ..|. .++|+++|.++|++..++|.+ +++||+|+|||+.|+|+|+|+|||+||++|+++|++ .| T Consensus 4 ~~M~-~~eI~~~L~~~l~~~~v~V~g---------------~gsHf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~I 67 (97) T 1ny8_A 4 DPME-NNEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRI 67 (97) T ss_dssp CCCC-CHHHHHHHHHHHCCSEEEEEE---------------SSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTT T ss_pred CCCC-HHHHHHHHHHHCCCCEEEEEC---------------CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 7578-999999999539971899968---------------983899999837768998899999999999998758971 Q ss_pred EEEEEECCCHHHHHHHH Q ss_conf 28777607689999853 Q gi|254780586|r 83 HALSIEAFSPDEKHTLK 99 (101) Q Consensus 83 HAlsik~~tp~E~~~~k 99 (101) |||+|+|+||+||++.| T Consensus 68 HALsikt~Tp~Ew~~~k 84 (97) T 1ny8_A 68 HAVSIKAYTPAEWARDR 84 (97) T ss_dssp SEEEEEECCHHHHHHHH T ss_pred EEEEEEECCHHHHHHHH T ss_conf 45587808999999861 No 7 >1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Probab=99.90 E-value=1.6e-24 Score=152.10 Aligned_cols=72 Identities=31% Similarity=0.524 Sum_probs=67.8 Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 99999999841995179999506568887777789985089999982034799888999999999999833782287776 Q gi|254780586|r 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSIE 88 (101) Q Consensus 9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsik 88 (101) .++|+++|+++|++..++|.|. +++||+|+|||+.|.|+|+|+|||+||++|+++|+++||||+|+ T Consensus 8 ~~~I~~~l~~~l~~~~i~V~d~--------------~g~hf~v~IvS~~F~g~~~v~Rhr~Vy~~L~~~~~~~iHAlsi~ 73 (80) T 1xs3_A 8 AETIRKLIESGLPEARVDVQGE--------------DGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLK 73 (80) T ss_dssp HHHHHHHHHHHSSSCEEEEESC--------------TTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEE T ss_pred HHHHHHHHHHHCCCCEEEEECC--------------CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 9999999983499988999839--------------99889999963675999889999999999999976997247878 Q ss_pred CCCHHH Q ss_conf 076899 Q gi|254780586|r 89 AFSPDE 94 (101) Q Consensus 89 ~~tp~E 94 (101) |+||+| T Consensus 74 t~tp~E 79 (80) T 1xs3_A 74 TLTPDE 79 (80) T ss_dssp EECGGG T ss_pred ECCCCC T ss_conf 078655 No 8 >2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Probab=99.83 E-value=1.9e-21 Score=135.56 Aligned_cols=69 Identities=29% Similarity=0.406 Sum_probs=63.2 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 99999999984199517999950656888777778998508999998203479988899999999999983378228777 Q gi|254780586|r 8 LINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSI 87 (101) Q Consensus 8 ~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsi 87 (101) ..++|+++|+++|++..++|.|.| ++++||.|+|||+.|+|+|+|+|||+||++|++ +.||||+| T Consensus 7 ~~~~Ie~~l~~~~~~~~v~V~D~s------------g~g~hf~i~IvS~~F~g~s~v~rhr~V~~~L~~---~~iHAlsi 71 (76) T 2kz0_A 7 TQSQLELLIRNAFPEAEITVTSLV------------GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDG---LNIHAIQI 71 (76) T ss_dssp TTHHHHHHHHHHCTTEEEEEECCS------------STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTT---SCCCSSSE T ss_pred CHHHHHHHHHHHCCCCEEEEEECC------------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCC---CCEEEEEE T ss_conf 899999999955999889999655------------998679999972673999899999999998578---97189999 Q ss_pred ECCC Q ss_conf 6076 Q gi|254780586|r 88 EAFS 91 (101) Q Consensus 88 k~~t 91 (101) +|++ T Consensus 72 kT~~ 75 (76) T 2kz0_A 72 QTGC 75 (76) T ss_dssp EECC T ss_pred EECC T ss_conf 8506 No 9 >1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Probab=95.84 E-value=0.055 Score=29.99 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC-CCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999998419951799995065688877777899-8508999998203479988899999999999983378228777 Q gi|254780586|r 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGL-GETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSI 87 (101) Q Consensus 9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~-~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsi 87 (101) .++|++.+.+.+++..+-+.. | ....... +.|-+-+.|+++.+.+ +..|.++...++...+. +-+.+ T Consensus 4 lk~I~e~ik~~~~~~kV~LFG-S------~ArG~~~~~~SDiDllVV~~~~~~--~~~~~~~~~~~~~~~~~---~pvdl 71 (96) T 1ylq_A 4 MKEIKEITKKDVQDAEIYLYG-S------VVEGDYSIGLSDIDVAIVSDVFED--RNRKLEFFGKITKKFFD---SPFEF 71 (96) T ss_dssp HHHHHHHHHHHCTTCEEEEES-H------HHHCCSSSCCCSEEEEEECGGGGS--HHHHHHHHHHHHHHTTT---CSEEE T ss_pred HHHHHHHHHHHCCCCEEEEEC-C------CCCCCCCCCCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHCC---CCEEE T ss_conf 999999999868993899988-7------315899888886569999678888--78999999999986179---98599 Q ss_pred ECCCHHHHHHHHC Q ss_conf 6076899998533 Q gi|254780586|r 88 EAFSPDEKHTLKN 100 (101) Q Consensus 88 k~~tp~E~~~~k~ 100 (101) .++||+||+.-++ T Consensus 72 ~v~t~ee~e~y~k 84 (96) T 1ylq_A 72 HILTKKEWKMSKR 84 (96) T ss_dssp EEECHHHHHHHHT T ss_pred EECCHHHHHHHHH T ss_conf 9848999999998 No 10 >2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Probab=72.73 E-value=1.7 Score=21.95 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=46.7 Q ss_pred HHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 999999984199-5179999506568887777789985089999982034799888999999999999833782287776 Q gi|254780586|r 10 NRITEKIRIALS-PDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSIE 88 (101) Q Consensus 10 ~~I~~kL~~~l~-~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsik 88 (101) .++-+.+...++ +..+-+.. |. +.......|=.-+.|+++.+.+...+++-..+... +..+ +.+- T Consensus 20 ~e~i~~l~~~~~~i~~v~LFG-S~------ArG~~~~~SDIDl~Vi~~~~~~~~~~~~~~~l~~~----l~~~---vD~i 85 (111) T 2rff_A 20 KEIVEEVASSFPNLEEVYIFG-SR------ARGDYLDTSDIDILFVFKGIKEMNVFDRMYMVSRF----IRGN---VDYI 85 (111) T ss_dssp HHHHHHHHHHCTTEEEEEEES-HH------HHSCCCTTCCEEEEEEESSCTTCCHHHHHHHHGGG----CCSS---EEEE T ss_pred HHHHHHHHHHCCCCCEEEEEC-CC------CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH----CCCC---EEEE T ss_conf 999999998669956999989-76------67998999997999996799841499999999998----2998---6899 Q ss_pred CCCHHHHHHHHC Q ss_conf 076899998533 Q gi|254780586|r 89 AFSPDEKHTLKN 100 (101) Q Consensus 89 ~~tp~E~~~~k~ 100 (101) .+||+||+..+. T Consensus 86 v~t~~e~~~~k~ 97 (111) T 2rff_A 86 VLDEGEKDRVKD 97 (111) T ss_dssp EEEGGGGGGSCS T ss_pred ECCHHHHHHHHC T ss_conf 889999998732 No 11 >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Probab=29.12 E-value=28 Score=15.30 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=27.8 Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHH Q ss_conf 065688877777899850899999820347998889999999 Q gi|254780586|r 30 ESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIY 71 (101) Q Consensus 30 ~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~ 71 (101) -||.|..|..+--.....=|+|.|+.+.-.|++.+-+ |++. T Consensus 3 ~~~~~~~~~~~~~p~~~y~fKI~vvG~~~vGKTSLi~-rl~~ 43 (191) T 2a5j_A 3 SSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLL-QFTD 43 (191) T ss_dssp -------CCCCCCCTTCEEEEEEEESSTTSSHHHHHH-HHHH T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH-HHHC T ss_conf 6555544678989888616899999989979999999-9846 Done!