Query         gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs    105 out of 1502
Neff          5.8 
Searched_HMMs 23785
Date          Tue May 31 18:31:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780586.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2dhm_A Protein BOLA; stationar 100.0 2.6E-34 1.1E-38  205.2   8.8   94    2-100     4-97  (107)
  2 1v60_A BOLA1, riken cDNA 18100 100.0 1.2E-32 4.9E-37  196.3   9.5   90    5-99     24-113 (123)
  3 2kdn_A Putative uncharacterize 100.0 3.4E-30 1.4E-34  182.9  10.3   86    3-100    20-105 (108)
  4 3o2e_A BOLA-like protein; ssgc 100.0 2.3E-29 9.5E-34  178.5   8.5   85    4-100    20-104 (105)
  5 1v9j_A BOLA-like protein riken 100.0 3.1E-29 1.3E-33  177.7   6.2   85    5-100    27-112 (113)
  6 1ny8_A Protein YRBA; structure  99.9 1.1E-25 4.6E-30  158.5   7.4   80    4-99      4-84  (97)
  7 1xs3_A Hypothetical protein XC  99.9 1.6E-24 6.9E-29  152.1   4.8   72    9-94      8-79  (80)
  8 2kz0_A BOLA family protein; BO  99.8 1.9E-21 7.8E-26  135.6   5.5   69    8-91      7-75  (76)
  9 1ylq_A Putative nucleotidyltra  95.8   0.055 2.3E-06   30.0   8.6   80    9-100     4-84  (96)
 10 2rff_A Putative nucleotidyltra  72.7     1.7 7.1E-05   22.0   2.3   77   10-100    20-97  (111)
 11 2a5j_A RAS-related protein RAB  29.1      28  0.0012   15.3   2.4   41   30-71      3-43  (191)

No 1  
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str}
Probab=100.00  E-value=2.6e-34  Score=205.24  Aligned_cols=94  Identities=33%  Similarity=0.467  Sum_probs=88.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             85514199999999984199517999950656888777778998508999998203479988899999999999983378
Q gi|254780586|r    2 QICHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEE   81 (101)
Q Consensus         2 ~i~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~   81 (101)
                      +.+.|.+.++|+++|++.|+|.+++|+|+|++|+||.|     +++||+|+|||+.|.|+++|+|||+||++|+++|+++
T Consensus         4 ~~~~m~~~~~I~~~L~~~~~~~~l~V~D~S~~H~~h~g-----~~~Hf~i~IvS~~F~g~s~i~rHR~V~~~L~~ei~~~   78 (107)
T 2dhm_A            4 GSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTT   78 (107)
T ss_dssp             SSCCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCC-----SCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             66777899999999984189857999978776668899-----9727999998675368878999999999999997179


Q ss_pred             CEEEEEECCCHHHHHHHHC
Q ss_conf             2287776076899998533
Q gi|254780586|r   82 LHALSIEAFSPDEKHTLKN  100 (101)
Q Consensus        82 iHAlsik~~tp~E~~~~k~  100 (101)
                      ||||+|+|+||+||++.++
T Consensus        79 IHALsik~~T~~Ew~~~~~   97 (107)
T 2dhm_A           79 VHALALHTYTIKEWEGLQD   97 (107)
T ss_dssp             CCCCEEEEECHHHHHTSSC
T ss_pred             CCEEEEEECCHHHHHHCCC
T ss_conf             7536878389999997379


No 2  
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.98  E-value=1.2e-32  Score=196.28  Aligned_cols=90  Identities=34%  Similarity=0.455  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             14199999999984199517999950656888777778998508999998203479988899999999999983378228
Q gi|254780586|r    5 HTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHA   84 (101)
Q Consensus         5 ~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHA   84 (101)
                      .-++++.|+++|+++|+|..|+|+|+|++|+||.|     +++||+|+|||+.|+|+++|+|||+||++|++||+++|||
T Consensus        24 ~gpie~~I~~kL~~~l~p~~leV~D~S~~H~~h~g-----~~sHf~i~IvS~~F~g~s~i~rHr~Vy~~L~~ei~~~iHA   98 (123)
T 1v60_A           24 AGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHA   98 (123)
T ss_dssp             SCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTT-----CCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             66499999999985089837999978866476789-----9857999998775479878999999999999997489733


Q ss_pred             EEEECCCHHHHHHHH
Q ss_conf             777607689999853
Q gi|254780586|r   85 LSIEAFSPDEKHTLK   99 (101)
Q Consensus        85 lsik~~tp~E~~~~k   99 (101)
                      |+|+|+||+||++.+
T Consensus        99 Lsik~~Tp~Ew~~~~  113 (123)
T 1v60_A           99 LAIQAKTPAQWRENP  113 (123)
T ss_dssp             EEEEEECTTTTTTCC
T ss_pred             EEEEECCHHHHHHCC
T ss_conf             687818999997179


No 3  
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.96  E-value=3.4e-30  Score=182.92  Aligned_cols=86  Identities=29%  Similarity=0.401  Sum_probs=79.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             55141999999999841995179999506568887777789985089999982034799888999999999999833782
Q gi|254780586|r    3 ICHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEEL   82 (101)
Q Consensus         3 i~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~i   82 (101)
                      ...|++.+.|+++|.++|+|..++|+|+|+           ++++||+|+|||+.|.|+++|+|||+||++|+++|+ +|
T Consensus        20 ~~~M~i~~~I~~kL~~~l~p~~leV~D~S~-----------g~~~Hf~v~IvS~~F~g~s~i~RHR~Vy~~L~ee~~-~I   87 (108)
T 2kdn_A           20 QGHMCIQKVIEDKLSSALKPTFLELVDKSC-----------GCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ-NI   87 (108)
T ss_dssp             TTSCSHHHHHHHHHHHHHCCSEEEEEECCC-----------SSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG-GC
T ss_pred             HCCCCHHHHHHHHHHHHCCCCEEEEEECCC-----------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CC
T ss_conf             456539999999998558997689997899-----------987679999982787799689999999999999971-24


Q ss_pred             EEEEEECCCHHHHHHHHC
Q ss_conf             287776076899998533
Q gi|254780586|r   83 HALSIEAFSPDEKHTLKN  100 (101)
Q Consensus        83 HAlsik~~tp~E~~~~k~  100 (101)
                      |||+|+|+||+||+++++
T Consensus        88 HALsikt~Tp~Ew~k~~~  105 (108)
T 2kdn_A           88 HAFSMKCHTPLEYDKLKS  105 (108)
T ss_dssp             SCEEEEEECHHHHHHHHH
T ss_pred             CCEEEEECCHHHHHHHHH
T ss_conf             104878089999998763


No 4  
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=99.96  E-value=2.3e-29  Score=178.46  Aligned_cols=85  Identities=24%  Similarity=0.315  Sum_probs=77.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             51419999999998419951799995065688877777899850899999820347998889999999999998337822
Q gi|254780586|r    4 CHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELH   83 (101)
Q Consensus         4 ~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iH   83 (101)
                      ..|...+.|+++|+.+|+|.+++|+|+|+           ++++||+|+|||+.|+|+++|+|||+||++|+++|++ ||
T Consensus        20 ~~m~~~~~Ie~kL~~~l~~~~l~V~D~S~-----------g~gsHf~i~IvS~~F~g~s~v~rhR~V~~~L~eei~~-IH   87 (105)
T 3o2e_A           20 GSMVSKSIVEERLRSMLSPQFLKVTDNSG-----------GCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQ-IH   87 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHCCSEEEEEECCB-----------TTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGGG-EE
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEECCC-----------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH-CC
T ss_conf             75523999999998448984799998789-----------9853489999846768997899999999999999850-31


Q ss_pred             EEEEECCCHHHHHHHHC
Q ss_conf             87776076899998533
Q gi|254780586|r   84 ALSIEAFSPDEKHTLKN  100 (101)
Q Consensus        84 Alsik~~tp~E~~~~k~  100 (101)
                      ||+|+|+||+||+++..
T Consensus        88 Alsikt~Tp~Ew~~k~~  104 (105)
T 3o2e_A           88 AFTMKCLTPGEWEAKNR  104 (105)
T ss_dssp             EEEEEEECHHHHHHTTC
T ss_pred             CEEEEECCHHHHHHCCC
T ss_conf             32777099999986419


No 5  
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=99.95  E-value=3.1e-29  Score=177.70  Aligned_cols=85  Identities=24%  Similarity=0.415  Sum_probs=77.8

Q ss_pred             CCHH-HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             1419-999999998419951799995065688877777899850899999820347998889999999999998337822
Q gi|254780586|r    5 HTSL-INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELH   83 (101)
Q Consensus         5 ~~~~-~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iH   83 (101)
                      .|.+ .+.|+++|++.|+|.+|+|+|+|+.|.          ++||+|+|||+.|.|+++|+|||+||++|+++|+ +||
T Consensus        27 ~m~~~~e~I~~kL~~~l~p~~leV~DeS~~h~----------G~Hf~i~IvS~~F~g~s~i~RHR~V~~~L~~~i~-~IH   95 (113)
T 1v9j_A           27 TMELSADYLREKLRQDLEAEHVEVEDTTLNRC----------ATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIH   95 (113)
T ss_dssp             SSSSCHHHHHHHHHHHHTCSEEEEEECCSSSS----------CCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GCS
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC----------CCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CCE
T ss_conf             67658999999998448981899997878988----------8279999971787799668999999999999972-250


Q ss_pred             EEEEECCCHHHHHHHHC
Q ss_conf             87776076899998533
Q gi|254780586|r   84 ALSIEAFSPDEKHTLKN  100 (101)
Q Consensus        84 Alsik~~tp~E~~~~k~  100 (101)
                      ||+|+||||+||++++.
T Consensus        96 ALsikt~Tp~Ew~~~~~  112 (113)
T 1v9j_A           96 AFEQKTLTPEQWTRQRR  112 (113)
T ss_dssp             SEEEEEECHHHHHHSCC
T ss_pred             EEEEEECCHHHHHHHHC
T ss_conf             04878189999998635


No 6  
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.92  E-value=1.1e-25  Score=158.48  Aligned_cols=80  Identities=26%  Similarity=0.410  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCC-CC
Q ss_conf             51419999999998419951799995065688877777899850899999820347998889999999999998337-82
Q gi|254780586|r    4 CHTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKE-EL   82 (101)
Q Consensus         4 ~~~~~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~-~i   82 (101)
                      ..|. .++|+++|.++|++..++|.+               +++||+|+|||+.|+|+|+|+|||+||++|+++|++ .|
T Consensus         4 ~~M~-~~eI~~~L~~~l~~~~v~V~g---------------~gsHf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~I   67 (97)
T 1ny8_A            4 DPME-NNEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRI   67 (97)
T ss_dssp             CCCC-CHHHHHHHHHHHCCSEEEEEE---------------SSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTT
T ss_pred             CCCC-HHHHHHHHHHHCCCCEEEEEC---------------CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7578-999999999539971899968---------------983899999837768998899999999999998758971


Q ss_pred             EEEEEECCCHHHHHHHH
Q ss_conf             28777607689999853
Q gi|254780586|r   83 HALSIEAFSPDEKHTLK   99 (101)
Q Consensus        83 HAlsik~~tp~E~~~~k   99 (101)
                      |||+|+|+||+||++.|
T Consensus        68 HALsikt~Tp~Ew~~~k   84 (97)
T 1ny8_A           68 HAVSIKAYTPAEWARDR   84 (97)
T ss_dssp             SEEEEEECCHHHHHHHH
T ss_pred             EEEEEEECCHHHHHHHH
T ss_conf             45587808999999861


No 7  
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.90  E-value=1.6e-24  Score=152.10  Aligned_cols=72  Identities=31%  Similarity=0.524  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99999999841995179999506568887777789985089999982034799888999999999999833782287776
Q gi|254780586|r    9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSIE   88 (101)
Q Consensus         9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsik   88 (101)
                      .++|+++|+++|++..++|.|.              +++||+|+|||+.|.|+|+|+|||+||++|+++|+++||||+|+
T Consensus         8 ~~~I~~~l~~~l~~~~i~V~d~--------------~g~hf~v~IvS~~F~g~~~v~Rhr~Vy~~L~~~~~~~iHAlsi~   73 (80)
T 1xs3_A            8 AETIRKLIESGLPEARVDVQGE--------------DGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLK   73 (80)
T ss_dssp             HHHHHHHHHHHSSSCEEEEESC--------------TTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEECC--------------CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9999999983499988999839--------------99889999963675999889999999999999976997247878


Q ss_pred             CCCHHH
Q ss_conf             076899
Q gi|254780586|r   89 AFSPDE   94 (101)
Q Consensus        89 ~~tp~E   94 (101)
                      |+||+|
T Consensus        74 t~tp~E   79 (80)
T 1xs3_A           74 TLTPDE   79 (80)
T ss_dssp             EECGGG
T ss_pred             ECCCCC
T ss_conf             078655


No 8  
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.83  E-value=1.9e-21  Score=135.56  Aligned_cols=69  Identities=29%  Similarity=0.406  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             99999999984199517999950656888777778998508999998203479988899999999999983378228777
Q gi|254780586|r    8 LINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSI   87 (101)
Q Consensus         8 ~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsi   87 (101)
                      ..++|+++|+++|++..++|.|.|            ++++||.|+|||+.|+|+|+|+|||+||++|++   +.||||+|
T Consensus         7 ~~~~Ie~~l~~~~~~~~v~V~D~s------------g~g~hf~i~IvS~~F~g~s~v~rhr~V~~~L~~---~~iHAlsi   71 (76)
T 2kz0_A            7 TQSQLELLIRNAFPEAEITVTSLV------------GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDG---LNIHAIQI   71 (76)
T ss_dssp             TTHHHHHHHHHHCTTEEEEEECCS------------STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTT---SCCCSSSE
T ss_pred             CHHHHHHHHHHHCCCCEEEEEECC------------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCC---CCEEEEEE
T ss_conf             899999999955999889999655------------998679999972673999899999999998578---97189999


Q ss_pred             ECCC
Q ss_conf             6076
Q gi|254780586|r   88 EAFS   91 (101)
Q Consensus        88 k~~t   91 (101)
                      +|++
T Consensus        72 kT~~   75 (76)
T 2kz0_A           72 QTGC   75 (76)
T ss_dssp             EECC
T ss_pred             EECC
T ss_conf             8506


No 9  
>1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=95.84  E-value=0.055  Score=29.99  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC-CCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             999999998419951799995065688877777899-8508999998203479988899999999999983378228777
Q gi|254780586|r    9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGL-GETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSI   87 (101)
Q Consensus         9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~-~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsi   87 (101)
                      .++|++.+.+.+++..+-+.. |      ....... +.|-+-+.|+++.+.+  +..|.++...++...+.   +-+.+
T Consensus         4 lk~I~e~ik~~~~~~kV~LFG-S------~ArG~~~~~~SDiDllVV~~~~~~--~~~~~~~~~~~~~~~~~---~pvdl   71 (96)
T 1ylq_A            4 MKEIKEITKKDVQDAEIYLYG-S------VVEGDYSIGLSDIDVAIVSDVFED--RNRKLEFFGKITKKFFD---SPFEF   71 (96)
T ss_dssp             HHHHHHHHHHHCTTCEEEEES-H------HHHCCSSSCCCSEEEEEECGGGGS--HHHHHHHHHHHHHHTTT---CSEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEC-C------CCCCCCCCCCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHCC---CCEEE
T ss_conf             999999999868993899988-7------315899888886569999678888--78999999999986179---98599


Q ss_pred             ECCCHHHHHHHHC
Q ss_conf             6076899998533
Q gi|254780586|r   88 EAFSPDEKHTLKN  100 (101)
Q Consensus        88 k~~tp~E~~~~k~  100 (101)
                      .++||+||+.-++
T Consensus        72 ~v~t~ee~e~y~k   84 (96)
T 1ylq_A           72 HILTKKEWKMSKR   84 (96)
T ss_dssp             EEECHHHHHHHHT
T ss_pred             EECCHHHHHHHHH
T ss_conf             9848999999998


No 10 
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=72.73  E-value=1.7  Score=21.95  Aligned_cols=77  Identities=16%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             999999984199-5179999506568887777789985089999982034799888999999999999833782287776
Q gi|254780586|r   10 NRITEKIRIALS-PDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSIE   88 (101)
Q Consensus        10 ~~I~~kL~~~l~-~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsik   88 (101)
                      .++-+.+...++ +..+-+.. |.      +.......|=.-+.|+++.+.+...+++-..+...    +..+   +.+-
T Consensus        20 ~e~i~~l~~~~~~i~~v~LFG-S~------ArG~~~~~SDIDl~Vi~~~~~~~~~~~~~~~l~~~----l~~~---vD~i   85 (111)
T 2rff_A           20 KEIVEEVASSFPNLEEVYIFG-SR------ARGDYLDTSDIDILFVFKGIKEMNVFDRMYMVSRF----IRGN---VDYI   85 (111)
T ss_dssp             HHHHHHHHHHCTTEEEEEEES-HH------HHSCCCTTCCEEEEEEESSCTTCCHHHHHHHHGGG----CCSS---EEEE
T ss_pred             HHHHHHHHHHCCCCCEEEEEC-CC------CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH----CCCC---EEEE
T ss_conf             999999998669956999989-76------67998999997999996799841499999999998----2998---6899


Q ss_pred             CCCHHHHHHHHC
Q ss_conf             076899998533
Q gi|254780586|r   89 AFSPDEKHTLKN  100 (101)
Q Consensus        89 ~~tp~E~~~~k~  100 (101)
                      .+||+||+..+.
T Consensus        86 v~t~~e~~~~k~   97 (111)
T 2rff_A           86 VLDEGEKDRVKD   97 (111)
T ss_dssp             EEEGGGGGGSCS
T ss_pred             ECCHHHHHHHHC
T ss_conf             889999998732


No 11 
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=29.12  E-value=28  Score=15.30  Aligned_cols=41  Identities=22%  Similarity=0.131  Sum_probs=27.8

Q ss_pred             ECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHH
Q ss_conf             065688877777899850899999820347998889999999
Q gi|254780586|r   30 ESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIY   71 (101)
Q Consensus        30 ~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~   71 (101)
                      -||.|..|..+--.....=|+|.|+.+.-.|++.+-+ |++.
T Consensus         3 ~~~~~~~~~~~~~p~~~y~fKI~vvG~~~vGKTSLi~-rl~~   43 (191)
T 2a5j_A            3 SSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLL-QFTD   43 (191)
T ss_dssp             -------CCCCCCCTTCEEEEEEEESSTTSSHHHHHH-HHHH
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH-HHHC
T ss_conf             6555544678989888616899999989979999999-9846


Done!