Query gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs 105 out of 1502
Neff 5.8
Searched_HMMs 13730
Date Wed Jun 1 08:57:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780586.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9ja_ d.52.6.1 (A:) BolA-lik 100.0 2.5E-29 1.8E-33 177.0 5.9 86 4-100 26-112 (113)
2 d1ny8a_ d.52.6.1 (A:) Hypothet 99.9 1.8E-25 1.3E-29 156.0 8.0 77 9-100 8-85 (97)
3 d1ylqa1 d.218.1.5 (A:1-90) Put 96.4 0.013 9.2E-07 32.2 8.9 80 9-100 1-81 (90)
4 d1veha_ d.52.8.1 (A:) HIRA-int 27.1 12 0.00085 16.1 1.4 26 5-31 62-87 (92)
5 d1ubdc2 g.37.1.1 (C:323-350) Y 20.1 5.4 0.00039 17.9 -1.4 16 56-71 10-25 (28)
6 d2hjja1 d.50.3.3 (A:10-75) Hyp 12.7 40 0.0029 13.2 1.5 19 24-56 17-35 (66)
7 d1xhja_ d.52.8.1 (A:) Nitrogen 10.7 48 0.0035 12.8 3.7 16 6-21 56-71 (88)
8 d1b79a_ a.81.1.1 (A:) N-termin 9.9 52 0.0038 12.6 2.3 19 64-82 36-54 (102)
9 d2j7ja2 g.37.1.1 (A:29-57) Tra 9.4 42 0.0031 13.1 0.7 17 56-72 13-29 (29)
10 d1srka_ g.37.1.1 (A:) Zinc fin 8.3 19 0.0014 14.9 -1.4 25 47-71 6-30 (35)
No 1
>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.95 E-value=2.5e-29 Score=176.95 Aligned_cols=86 Identities=22% Similarity=0.381 Sum_probs=78.1
Q ss_pred CCCH-HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5141-999999999841995179999506568887777789985089999982034799888999999999999833782
Q gi|254780586|r 4 CHTS-LINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEEL 82 (101)
Q Consensus 4 ~~~~-~~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~i 82 (101)
..|+ ..+.|+++|+++|+|.+++|+|+|+.| +++||+|+|||+.|.|+++|+|||+||++|+++|+ +|
T Consensus 26 ~~m~~~~e~I~~kL~~~~~~~~leV~D~S~~h----------~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~-~i 94 (113)
T d1v9ja_ 26 ATMELSADYLREKLRQDLEAEHVEVEDTTLNR----------CATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HI 94 (113)
T ss_dssp SSSSSCHHHHHHHHHHHHTCSEEEEEECCSSS----------SCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GC
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC----------CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-CC
T ss_conf 77763699999999844898379999667899----------87059999986021477440788947999999972-04
Q ss_pred EEEEEECCCHHHHHHHHC
Q ss_conf 287776076899998533
Q gi|254780586|r 83 HALSIEAFSPDEKHTLKN 100 (101)
Q Consensus 83 HAlsik~~tp~E~~~~k~ 100 (101)
|||+|+|+||+||++.+.
T Consensus 95 HAlsi~t~Tp~Ew~~~~~ 112 (113)
T d1v9ja_ 95 HAFEQKTLTPEQWTRQRR 112 (113)
T ss_dssp SSEEEEEECHHHHHHSCC
T ss_pred EEEEEEECCHHHHHHHHC
T ss_conf 204878189999987535
No 2
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=1.8e-25 Score=155.96 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf 999999998419951799995065688877777899850899999820347998889999999999998337-8228777
Q gi|254780586|r 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKE-ELHALSI 87 (101)
Q Consensus 9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~-~iHAlsi 87 (101)
.++|+++|.++|+++.++|.+ +++||+|+|||+.|+|+|+|+|||+||++|+++|++ .||||+|
T Consensus 8 ~~eI~~~L~~~l~~~~v~V~g---------------~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAlsi 72 (97)
T d1ny8a_ 8 NNEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSI 72 (97)
T ss_dssp CHHHHHHHHHHHCCSEEEEEE---------------SSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEC---------------CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999999539974899957---------------98579999983776899889999999999999874797331175
Q ss_pred ECCCHHHHHHHHC
Q ss_conf 6076899998533
Q gi|254780586|r 88 EAFSPDEKHTLKN 100 (101)
Q Consensus 88 k~~tp~E~~~~k~ 100 (101)
+|+||+||++.|.
T Consensus 73 kt~Tp~Ew~~~kk 85 (97)
T d1ny8a_ 73 KAYTPAEWARDRK 85 (97)
T ss_dssp EECCHHHHHHHHH
T ss_pred EECCHHHHHHHHH
T ss_conf 7289999998610
No 3
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=96.42 E-value=0.013 Score=32.19 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC-CCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999998419951799995065688877777899-8508999998203479988899999999999983378228777
Q gi|254780586|r 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGL-GETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEELHALSI 87 (101)
Q Consensus 9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~-~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~iHAlsi 87 (101)
.++|++.+++.+++..+-+.. | ++ .+... ++|-.-+.|+++.+. +..+|.+.+..++...+. +-+.+
T Consensus 1 l~~i~e~ik~~~~~~kViLFG-S-----~A-rG~~~~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~~---~pvd~ 68 (90)
T d1ylqa1 1 MKEIKEITKKDVQDAEIYLYG-S-----VV-EGDYSIGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFFD---SPFEF 68 (90)
T ss_dssp HHHHHHHHHHHCTTCEEEEES-H-----HH-HCCSSSCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTTT---CSEEE
T ss_pred CHHHHHHHHHHCCCCEEEEEC-C-----CC-CCCCCCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHHCCC---CCEEE
T ss_conf 978999999878995899987-6-----20-389878888657999967888--988999999999864369---98489
Q ss_pred ECCCHHHHHHHHC
Q ss_conf 6076899998533
Q gi|254780586|r 88 EAFSPDEKHTLKN 100 (101)
Q Consensus 88 k~~tp~E~~~~k~ 100 (101)
..+||+||+..++
T Consensus 69 ~v~tpeefe~~~k 81 (90)
T d1ylqa1 69 HILTKKEWKMSKR 81 (90)
T ss_dssp EEECHHHHHHHHT
T ss_pred EECCHHHHHHHHH
T ss_conf 9818999999999
No 4
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.11 E-value=12 Score=16.09 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 141999999999841995179999506
Q gi|254780586|r 5 HTSLINRITEKIRIALSPDDLQVINES 31 (101)
Q Consensus 5 ~~~~~~~I~~kL~~~l~~~~i~V~D~S 31 (101)
.+++.+.|+..|+..+ |.-..|++.+
T Consensus 62 ~~Tlk~~Ie~~L~~~v-pev~~V~~v~ 87 (92)
T d1veha_ 62 IITLKSGIQNMLQFYI-PEVEGVEQVS 87 (92)
T ss_dssp HHHTHHHHHHHHHHHC-SSCCCEEECS
T ss_pred HHHHHHHHHHHHHHHC-CCCCEEEECC
T ss_conf 9999999999999878-9855698827
No 5
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.15 E-value=5.4 Score=17.93 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.2
Q ss_pred HHHCCCCHHHHHHHHH
Q ss_conf 0347998889999999
Q gi|254780586|r 56 PTFTGISKTFRHRKIY 71 (101)
Q Consensus 56 ~~F~g~s~i~rHr~V~ 71 (101)
..|..-++++||++|.
T Consensus 10 kaf~essklkrh~lvh 25 (28)
T d1ubdc2 10 KAFVESSKLKRHQLVH 25 (28)
T ss_dssp CEESSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999898877775100
No 6
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=12.73 E-value=40 Score=13.21 Aligned_cols=19 Identities=11% Similarity=0.429 Sum_probs=13.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEH
Q ss_conf 799995065688877777899850899999820
Q gi|254780586|r 24 DLQVINESHLHVGHQPQFNGLGETHIRIKIVSP 56 (101)
Q Consensus 24 ~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~ 56 (101)
.+.|+|+- ++||+++|...
T Consensus 17 NV~IEDDq--------------g~HFRlVvR~~ 35 (66)
T d2hjja1 17 NITLEDDQ--------------GSHFRLVVRDT 35 (66)
T ss_dssp TEEEESCS--------------SSCCEEEEECS
T ss_pred CEEEECCC--------------CCEEEEEEECC
T ss_conf 50122488--------------87388999868
No 7
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=10.69 E-value=48 Score=12.75 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 4199999999984199
Q gi|254780586|r 6 TSLINRITEKIRIALS 21 (101)
Q Consensus 6 ~~~~~~I~~kL~~~l~ 21 (101)
+++.+.|+..|+..++
T Consensus 56 ~Tlk~~Ie~~L~~~vp 71 (88)
T d1xhja_ 56 ITLKAGIERALHEEVP 71 (88)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998789
No 8
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
Probab=9.92 E-value=52 Score=12.59 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999999833782
Q gi|254780586|r 64 TFRHRKIYDLLHKEIKEEL 82 (101)
Q Consensus 64 i~rHr~V~~~L~~e~~~~i 82 (101)
..+||.||+++.+....+.
T Consensus 36 ~~~h~~If~ai~~l~~~g~ 54 (102)
T d1b79a_ 36 TRPHRHIFTEMARLQESGS 54 (102)
T ss_dssp SHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 1989999999999850699
No 9
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=9.38 E-value=42 Score=13.06 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=13.2
Q ss_pred HHHCCCCHHHHHHHHHH
Q ss_conf 03479988899999999
Q gi|254780586|r 56 PTFTGISKTFRHRKIYD 72 (101)
Q Consensus 56 ~~F~g~s~i~rHr~V~~ 72 (101)
..|.--|+++||-.|.+
T Consensus 13 k~fs~ps~lkrhekvha 29 (29)
T d2j7ja2 13 KRFSLPSRLKRHEKVHA 29 (29)
T ss_dssp CEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCC
T ss_conf 22227788865144039
No 10
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.33 E-value=19 Score=14.94 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEEEEEHHHCCCCHHHHHHHHH
Q ss_conf 0899999820347998889999999
Q gi|254780586|r 47 THIRIKIVSPTFTGISKTFRHRKIY 71 (101)
Q Consensus 47 sHf~i~IvS~~F~g~s~i~rHr~V~ 71 (101)
-=|.-.+....|...+-+++|..+.
T Consensus 6 kPy~C~~C~k~F~~~~~L~~H~r~H 30 (35)
T d1srka_ 6 RPFVCRICLSAFTTKANCARHLKVH 30 (35)
T ss_dssp SCEECSSSCCEESSHHHHHHHHGGG
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 4602887889656869999871104
Done!