RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780586|ref|YP_003064999.1| BolA family protein
[Candidatus Liberibacter asiaticus str. psy62]
(101 letters)
>gnl|CDD|30620 COG0271, BolA, Stress-induced morphogen (activity unknown)
[Signal transduction mechanisms].
Length = 90
Score = 75.8 bits (186), Expect = 3e-15
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 11 RITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKI 70
RI +K+R A P L++I+ESH H GH G G +H ++ IVS F G S RHR +
Sbjct: 7 RIEKKLRAAFPPSFLEIIDESHRHHGHA----GGGGSHFKVVIVSEAFQGKSLVARHRLV 62
Query: 71 YDLLHKEIKEELHALSIEAFSPDE 94
Y L E+ +HAL++ ++P+E
Sbjct: 63 YSALKDELSGGIHALALHTYTPEE 86
>gnl|CDD|145069 pfam01722, BolA, BolA-like protein. This family consist of the
morphoprotein BolA from E. coli and its various
homologues. In E. coli over expression of this protein
causes round morphology and may be involved in
switching the cell between elongation and septation
systems during cell division. The expression of BolA is
growth rate regulated and is induced during the
transition into the the stationary phase. BolA is also
induced by stress during early stages of growth and may
have a general role in stress response. It has also
been suggested that BolA can induce the transcription
of penicillin binding proteins 6 and 5.
Length = 72
Score = 74.9 bits (185), Expect = 5e-15
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 14 EKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDL 73
+ + AL P L+V +ESH G +H ++ +VS F G S RHR +Y
Sbjct: 1 KLLTAALPPAHLEVEDESHKG----------GGSHFKVVVVSDAFEGKSLVKRHRLVYAA 50
Query: 74 LHKEIKEELHALSIEAFSPDE 94
L +E+ +HALSI+ ++P+E
Sbjct: 51 LKEELASGIHALSIKTYTPEE 71
>gnl|CDD|37524 KOG2313, KOG2313, KOG2313, Stress-induced protein UVI31+ [Signal
transduction mechanisms].
Length = 100
Score = 72.8 bits (178), Expect = 2e-14
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 9 INRITEKIRIALSPDDLQVINESHLHVGHQ-PQFNGLGETHIRIKIVSPTFTGISKTFRH 67
+RI EK+ AL P +L++ NESH H GH P+ ETH R+++VS F G+S RH
Sbjct: 12 ESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRH 71
Query: 68 RKIYDLLHKEIKEE-LHALSIEAFSPDE 94
R +Y L +E+ +HALSI A +P E
Sbjct: 72 RLVYKALKEELAGTGVHALSIMAKTPSE 99
>gnl|CDD|38558 KOG3348, KOG3348, KOG3348, BolA (bacterial stress-induced
morphogen)-related protein [Signal transduction
mechanisms].
Length = 85
Score = 43.0 bits (101), Expect = 2e-05
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 11 RITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKI 70
R+ E + AL P+ ++V + S G G + IVS F G S RHR +
Sbjct: 7 RLEELLTEALEPEHVEVQDVS----------GGCGSM-FDVVIVSAAFEGKSLLARHRLV 55
Query: 71 YDLLHKEIKEELHALSIEAFSPDEK 95
+L +EIK E+HAL+I+ ++P+E
Sbjct: 56 NSILAEEIK-EIHALTIKTYTPEEW 79
>gnl|CDD|34612 COG5007, COG5007, Predicted transcriptional regulator, BolA
superfamily [Transcription].
Length = 80
Score = 39.5 bits (92), Expect = 2e-04
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 48 HIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKE-ELHALSIEAFSPDE 94
H ++ VS F G S+ R + +Y L I + E+HALSI+ ++P E
Sbjct: 27 HFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAE 74
>gnl|CDD|37006 KOG1795, KOG1795, KOG1795, U5 snRNP spliceosome subunit [RNA
processing and modification].
Length = 2321
Score = 27.7 bits (61), Expect = 0.80
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 28 INESHLHVGHQPQFNGLGETHIRIKIVSPTFT-GISKTFR-------HRKIYDLLHKEIK 79
IN ++++VG Q Q L T I + PT + + FR H + + L +
Sbjct: 1535 INRANVYVGFQVQ---LDLTGIYMHGKIPTLKISLIQIFRAHLWQKIHESVVNDLCQVFD 1591
Query: 80 EELHALSIEAFSPDEKHTLKNH 101
+EL ALSIE + H K++
Sbjct: 1592 QELDALSIETVQKETIHPRKSY 1613
>gnl|CDD|30407 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 26.4 bits (58), Expect = 1.6
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 67 HRKIYDLLHKEIKEELHALSIEAFSPDEKHTLKN 100
+Y L E+K L + FSP K KN
Sbjct: 645 PNALYYELENEVKPVLDEIIDGRFSPGWKSRFKN 678
>gnl|CDD|31569 COG1379, COG1379, Uncharacterized conserved protein [Function
unknown].
Length = 403
Score = 25.7 bits (56), Expect = 2.8
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 37 HQPQFNGLGETHIRIKIVSPTFTGISKTFRHR 68
H P + LG + ++ +F + K + +
Sbjct: 195 HSPYPHRLGREFNQFEVEEISFEELRKAIKGK 226
>gnl|CDD|176978 CHL00037, petA, cytochrome f.
Length = 320
Score = 24.9 bits (55), Expect = 4.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 72 DLLHKEIKEELHALSIEAFSPDEKHTL 98
D + E+KE++ LS + +SP++K+ L
Sbjct: 122 DRISPEMKEKIGNLSFQPYSPEKKNIL 148
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 24.8 bits (55), Expect = 5.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 59 TGISKTFRHRKIYDLLHKEIKEELHALSI 87
T I + H + D L + +KEE+ L +
Sbjct: 283 TAIKRVLVHESVADELVELLKEEVAKLKV 311
>gnl|CDD|153272 cd07588, BAR_Amphiphysin, The Bin/Amphiphysin/Rvs (BAR) domain of
Amphiphysins. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Amphiphysins
function primarily in endocytosis and other membrane
remodeling events. They contain an N-terminal BAR domain
with an additional N-terminal amphipathic helix (an
N-BAR), a variable central domain, and a C-terminal SH3
domain. This subfamily is composed of different isoforms
of amphiphysin and Bridging integrator 2 (Bin2).
Amphiphysin I proteins, enriched in the brain and
nervous system, contain domains that bind clathrin,
Adaptor Protein complex 2 (AP2), dynamin and
synaptojanin. They function in synaptic vesicle
endocytosis. Some amphiphysin II isoforms, also called
Bridging integrator 1 (Bin1), are localized in many
different tissues and may function in intracellular
vesicle trafficking. In skeletal muscle, Bin1 plays a
role in the organization and maintenance of the T-tubule
network. Bin2 is mainly expressed in hematopoietic cells
and is upregulated during granulocyte differentiation.
The N-BAR domains of amphiphysins form a curved dimer
with a positively-charged concave face that can drive
membrane bending and curvature.
Length = 211
Score = 24.6 bits (54), Expect = 5.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 68 RKIYDLLHKEIKEELHAL 85
+K+Y+ L+ E+ EEL AL
Sbjct: 152 KKVYEELNTELHEELPAL 169
>gnl|CDD|38093 KOG2882, KOG2882, KOG2882, p-Nitrophenyl phosphatase [Inorganic ion
transport and metabolism].
Length = 306
Score = 24.5 bits (53), Expect = 7.0
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 40 QFNGLGETHIRI-KIVSPTFTGISKTFRHR-----KIYDLLHKEIKEELHALSIEAFSPD 93
+F LG ++ I S + I+ + R K+Y + + I+EEL E F
Sbjct: 74 KFAKLGFNSVKEENIFSSAYA-IADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYFGGG 132
Query: 94 EKH 96
Sbjct: 133 PDG 135
>gnl|CDD|37281 KOG2070, KOG2070, KOG2070, Guanine nucleotide exchange factor
[Nucleotide transport and metabolism].
Length = 661
Score = 23.9 bits (51), Expect = 9.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 59 TGISKTFRHRKIYDLLHKEIKEELHALSIEAFSPDEKHTLK 99
TG+SK FR Y L +E+ E H +E + PD +
Sbjct: 231 TGLSKPFRRLDKYPTLLQEL--ERH---MEDYHPDRGDIQR 266
>gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.
This uncharacterized family contains a P-loop.
Length = 123
Score = 23.8 bits (52), Expect = 9.7
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 43 GLGETHIRIKIVSPTFT------GISKTFRHRKIYDLLHKEIKEELHALSIE 88
GLG I + SPTFT H +Y L E E L L
Sbjct: 38 GLG---ITGNVTSPTFTLVNVYEPGKLPLYHYDLYRLEDPEELELLGILDYA 86
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,245,578
Number of extensions: 58579
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 21
Length of query: 101
Length of database: 6,263,737
Length adjustment: 68
Effective length of query: 33
Effective length of database: 4,794,325
Effective search space: 158212725
Effective search space used: 158212725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)