RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780586|ref|YP_003064999.1| BolA family protein
[Candidatus Liberibacter asiaticus str. psy62]
(101 letters)
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 123
Score = 90.3 bits (224), Expect = 1e-19
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
I K+ ALSP+ L++ NES H ETH R+ +VS F G+S RHR
Sbjct: 29 AAIRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRL 83
Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94
+++ L +E+ +HAL+I+A +P +
Sbjct: 84 VHEALSEELAGPVHALAIQAKTPAQ 108
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene,
structural genomics, NPPSFA; NMR {Escherichia coli str}
Length = 107
Score = 84.5 bits (209), Expect = 5e-18
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
RI EK+R A P L+V++ES+ H E+H ++ +VS FTG RHR
Sbjct: 12 ERIEEKLRAAFQPVFLEVVDESYRHNVP-----AGSESHFKVVLVSDRFTGERFLNRHRM 66
Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94
IY L +E+ +HAL++ ++ E
Sbjct: 67 IYSTLAEELSTTVHALALHTYTIKE 91
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure,
ssgcid, seattle structural genomics center for
infectious disease; NMR {Plasmodium falciparum}
Length = 108
Score = 79.5 bits (196), Expect = 2e-16
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 5 HTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKT 64
H + I +K+ AL P L+++++S T IVS F
Sbjct: 22 HMCIQKVIEDKLSSALKPTFLELVDKSCGC-----------GTSFDAVIVSNNFEDKKLL 70
Query: 65 FRHRKIYDLLHKEIKEELHALSIEAFSPDEKHTLKN 100
RHR + +L +E++ +HA S++ +P E LK+
Sbjct: 71 DRHRLVNTILKEELQ-NIHAFSMKCHTPLEYDKLKS 105
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom
center for infectious disease, BOL like protein,
unknown FU; 1.95A {Babesia bovis}
Length = 105
Score = 78.0 bits (192), Expect = 4e-16
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
+ + E++R LSP L+V + S IVS F G R R
Sbjct: 26 SIVEERLRSMLSPQFLKVTDNSGGC-----------GAAFNAYIVSQQFEGKGLLDRQRL 74
Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94
+ + E+ ++HA +++ +P E
Sbjct: 75 VNSAIAAEMP-QIHAFTMKCLTPGE 98
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
morphogene, stress-induced morphogene, structural
genomics; NMR {Mus musculus} SCOP: d.52.6.1
Length = 113
Score = 74.9 bits (184), Expect = 4e-15
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
+ + EK+R L + ++V + + T R+ +VS F G RHR
Sbjct: 33 DYLREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQRHRL 82
Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94
+ + L +E+ +HA + +P++
Sbjct: 83 VNECLAEELP-HIHAFEQKTLTPEQ 106
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN
integrated structural and functional genomic project,
unknown function; NMR {Synthetic}
Length = 80
Score = 69.7 bits (171), Expect = 1e-13
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHR 68
I + I L + V E H +VSP F G + RHR
Sbjct: 8 AETIRKLIESGLPEARVDVQGED--------------GVHFEATVVSPAFVGKAPLARHR 53
Query: 69 KIYDLLHKEIKEELHALSIEAFSPDE 94
+Y L + + +HAL ++ +PDE
Sbjct: 54 MVYATLGELMGGAIHALQLKTLTPDE 79
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
structural genomics, PSI, protein structure initiative;
NMR {Escherichia coli} SCOP: d.52.6.1
Length = 97
Score = 62.9 bits (153), Expect = 2e-11
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
N I + ALS ++ V +H ++ V F G+S+ + +
Sbjct: 9 NEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQT 53
Query: 70 IYDLLHKEIKE-ELHALSIEAFSPDE 94
+Y L + I + +HA+SI+A++P E
Sbjct: 54 VYGPLMEYIADNRIHAVSIKAYTPAE 79
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic
ehrlichiosis, STRE response, structural genomics; NMR
{Ehrlichia chaffeensis}
Length = 76
Score = 52.8 bits (127), Expect = 2e-08
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
+++ IR A ++ V + H IK++S F G SK +HR
Sbjct: 9 SQLELLIRNAFPEAEITVTSLVG------------DNNHYSIKVISSQFQGKSKLEQHRM 56
Query: 70 IYDLLHKEIKEELHALSIEA 89
IY +L +HA+ I+
Sbjct: 57 IYKVLD---GLNIHAIQIQT 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 29.9 bits (67), Expect = 0.14
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 31/75 (41%)
Query: 5 HTSLINRITEKIR-------IALSPDDLQV-----------------INES------HLH 34
H+ L+ ++ I ++ + D+Q+ I+E L
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 35 VGHQPQFNGLGETHI 49
V THI
Sbjct: 488 V-KWETTTQFKATHI 501
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, ATP-binding, cytoplasm, hydrolase,
membrane; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 26.6 bits (58), Expect = 1.5
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 17 RIALSPDDLQV--INESHLHVGHQPQFNGLGETHIRIKIVSPTFTGI---SKTFRHR--- 68
R L D++V ++E+ + Q GLG+ +RIK + P T I S TF R
Sbjct: 252 RRQLDARDIKVFVLDEADNMLDQQ----GLGDQSMRIKHLLPRNTQIVLFSATFSERVEK 307
Query: 69 --KIYDLLHKEIKEELHALSIEA 89
+ + EI+ + LS+E
Sbjct: 308 YAERFAPNANEIRLKTEELSVEG 330
>1e2w_A Cytochrome F; electron transport proteins, internal water chain,
photosynthetic function impaired; HET: HEC; 1.6A
{Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB:
1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Length = 251
Score = 24.6 bits (54), Expect = 5.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 72 DLLHKEIKEELHALSIEAFSPDEKHTL 98
D + EIKE++ L + +SP++K+ L
Sbjct: 87 DRVPAEIKEKVGNLYYQPYSPEQKNIL 113
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein;
1.48A {Synthetic} SCOP: k.9.1.1
Length = 48
Score = 24.7 bits (53), Expect = 5.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 78 IKEELHALSIEAFSPDEKHTLKN 100
+K EL AL E FSP+E L++
Sbjct: 5 LKSELQALKKEGFSPEELAALES 27
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron
transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A
{Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2
f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Length = 289
Score = 24.3 bits (53), Expect = 7.5
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 72 DLLHKEIKEELHALSIEAFSPDEKHTL 98
+ + +E+K+E+ + + + + + L
Sbjct: 88 ERIPEELKKEVGDVYFQPYKEGQDNVL 114
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 905,082
Number of extensions: 38592
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 23
Length of query: 101
Length of database: 5,693,230
Length adjustment: 66
Effective length of query: 35
Effective length of database: 4,093,126
Effective search space: 143259410
Effective search space used: 143259410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)