RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62] (101 letters) >d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 Score = 67.6 bits (165), Expect = 3e-13 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 + + EK+R L + ++V + + T R+ +VS F G RHR Sbjct: 33 DYLREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQRHRL 82 Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94 + + L +E+ +HA + +P++ Sbjct: 83 VNECLAEELP-HIHAFEQKTLTPEQ 106 >d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97 Score = 59.0 bits (143), Expect = 1e-10 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 16/86 (18%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 N I + ALS ++ V +H ++ V F G+S+ + + Sbjct: 9 NEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQT 53 Query: 70 IYDLLHKEIKE-ELHALSIEAFSPDE 94 +Y L + I + +HA+SI+A++P E Sbjct: 54 VYGPLMEYIADNRIHAVSIKAYTPAE 79 >d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 187 Score = 23.1 bits (50), Expect = 6.0 Identities = 10/27 (37%), Positives = 18/27 (66%) Query: 72 DLLHKEIKEELHALSIEAFSPDEKHTL 98 D + EIKE++ L + +SP++K+ L Sbjct: 87 DRVPAEIKEKVGNLYYQPYSPEQKNIL 113 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0551 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 394,386 Number of extensions: 17294 Number of successful extensions: 47 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 11 Length of query: 101 Length of database: 2,407,596 Length adjustment: 62 Effective length of query: 39 Effective length of database: 1,556,336 Effective search space: 60697104 Effective search space used: 60697104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.3 bits)