HHsearch alignment for GI: 254780588 and conserved domain: CHL00028
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit.
Probab=98.05 E-value=6.3e-05 Score=55.99 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHH-HHHHH-HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf 776836899999-99999-9971994899995353246778430027999999988862379988999961677775421
Q gi|254780588|r 130 GSPRPEGYRKAV-RLMEM-ADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMG 207 (317)
Q Consensus 130 G~~~p~g~rKa~-r~~~~-A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a 207 (317)
T Consensus 37 ~~i~~~~a~~iia~ll~L~~e~~~kpI~lyINSpGG~v~-----~--glaIy---D~m~~~~~~V~Ti~~G~AaS~asli 106 (201)
T CHL00028 37 QELDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVI-----S--GIAIY---DTMQFVKPDVHTICLGLAASMGSFI 106 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH-----H--HHHHH---HHHHHCCCCEEEEEEEHHCCHHHHH
T ss_conf 801789999999999997264979998999989985486-----8--99999---9998559995899760010536788
Q ss_pred CCCCC--CEEEECCCCEEEECHHHH-----HHHHCCCC-------------------HHHHHHHHHC----CCCHHHHHH
Q ss_conf 13320--002204674012155442-----24421560-------------------1225655420----388489997
Q gi|254780588|r 208 IAAAN--FVYMLEHAIYSVISPEGA-----ASILWRDS-------------------SRAAQAAIAM----KIIATDLQD 257 (317)
Q Consensus 208 ~~~~d--~v~m~~~s~ysvisPEg~-----AsILwkd~-------------------~~a~eAAeal----klTa~DL~~ 257 (317)
T Consensus 107 laaG~kgkR~~~pns~iMIHqp~~g~~~G~a~di~~~a~el~~~~~~i~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~~ 186 (201)
T CHL00028 107 LAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETLTRVYVQRTGKPLWVISEDMERDVFMSATEAKA 186 (201)
T ss_pred HHCCCCCCEEECCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 61488763562658556124454676789789999999999999999999999887959999998715784267999998
Q ss_pred CCCCCEEECCC
Q ss_conf 89965262288
Q gi|254780588|r 258 LSIIDGIIPEP 268 (317)
Q Consensus 258 lGiID~II~EP 268 (317)
T Consensus 187 yGliD~Il~~~ 197 (201)
T CHL00028 187 YGIVDLVAVEN 197 (201)
T ss_pred CCCCCEECCCC
T ss_conf 19988882578