HHsearch alignment for GI: 254780588 and conserved domain: COG1030
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].
Probab=97.84 E-value=0.0006 Score=49.08 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=101.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3800899984587750234420267768368999999999999719-948999953532467784300279999999888
Q gi|254780588|r 106 HGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFK-IPVISFIDTAGAYPGVDAEARGQGEAIARATEM 184 (317)
Q Consensus 106 ~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~-lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~ 184 (317)
T Consensus 24 ~~~~v~vi~i~-------------g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGG----------l~~sm~~iv~~ 80 (436)
T COG1030 24 AEKKVYVIEID-------------GAIDPASADYLQRALQSAEEENAAAVVLELDTPGG----------LLDSMRQIVRA 80 (436)
T ss_pred CCCEEEEEEEC-------------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC----------HHHHHHHHHHH
T ss_conf 67718999925-------------74277799999999999985798479999608972----------67999999999
Q ss_pred HHCCCCCEEEEEECC---CCCCCCCCCCCCCCEEEECCCCEEEECHHHH--------H-----------HHHC--CCCHH
Q ss_conf 623799889999616---7777542113320002204674012155442--------2-----------4421--56012
Q gi|254780588|r 185 CLKLQVPILSIIIGE---GGSGGAMGIAAANFVYMLEHAIYSVISPEGA--------A-----------SILW--RDSSR 240 (317)
Q Consensus 185 ~~~~~vP~i~vv~ge---g~sGGA~a~~~~d~v~m~~~s~ysvisPEg~--------A-----------sILw--kd~~~ 240 (317)
T Consensus 81 i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ 160 (436)
T COG1030 81 ILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTW 160 (436)
T ss_pred HHCCCCCEEEEECCCCCCHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 87599977999948985110403279885676551798743546502479988550143789999999999983998699
Q ss_pred HHHH-HHHCCCCHHHHHHCCCCCEEEC
Q ss_conf 2565-5420388489997899652622
Q gi|254780588|r 241 AAQA-AIAMKIIATDLQDLSIIDGIIP 266 (317)
Q Consensus 241 a~eA-AealklTa~DL~~lGiID~II~ 266 (317)
T Consensus 161 ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 161 AERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred HHHHHHHCCCCCHHHHHHCCCCCCCCC
T ss_conf 999864215778667985594003558