HHsearch alignment for GI: 254780588 and conserved domain: PRK03580
>PRK03580 carnitinyl-CoA dehydratase; Provisional.
Probab=97.98 E-value=0.00078 Score=48.25 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCC-CC-CCCCC--------CCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 77683689999999999997-1994899995353-24-67784--------30027999999988862379988999961
Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAG-AY-PGVDA--------EARGQGEAIARATEMCLKLQVPILSIIIG 198 (317)
Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpG-a~-~g~~a--------E~~G~~~aia~~l~~~~~~~vP~i~vv~g 198 (317)
T Consensus 25 NAl~~~m~~~l~~al~~~~~d~~vrvvvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G 104 (262)
T PRK03580 25 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNG 104 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 77999999999999999861999659999669996042671076653478643134266789999998199999999868
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHC-C--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC
Q ss_conf 67777542113320002204674012------15544224421-5--6012256-554203884899978996526228
Q gi|254780588|r 199 EGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILW-R--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317)
Q Consensus 199 eg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILw-k--d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317)
T Consensus 105 ~a~GgG~~LalacD~~ia~~~a~f~~pe~~lGl~p~~g~~~~l~r~iG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~ 183 (262)
T PRK03580 105 YAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIVNEMLMTGRRMDAEEALRWGLVNRVVSQ 183 (262)
T ss_pred EEEEHHHHHHHHCCEEEECCCCCEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCH
T ss_conf 6661869998852702414787651577603678885499999999709999999871898759999887991054384