HHsearch alignment for GI: 254780588 and conserved domain: TIGR01117
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit; InterPro: IPR005783 This family describes methymalonyl-CoA decarboxylase alpha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.; GO: 0004492 methylmalonyl-CoA decarboxylase activity, 0006814 sodium ion transport.
Probab=99.95 E-value=7.2e-27 Score=211.71 Aligned_cols=211 Identities=26% Similarity=0.437 Sum_probs=181.4
Q ss_pred HHHHCCHHHH-HHHHHHHCCC--CEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 8763500223-7999862254--506722753347897299998875380089998458775023442026776836899
Q gi|254780588|r 62 QVSRHPNRPH-YIDYINSLFT--HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYR 138 (317)
Q Consensus 62 ~~aRh~~Rp~-~~dyi~~l~~--df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~r 138 (317)
T Consensus 271 ~~Pd~~~~~y~~~~vi~~~vdn~~~~e~~--P~y~--~n~~~~f~r~~G~~vGi~an~--------P~~~aG~ld~~~~d 338 (513)
T TIGR01117 271 LLPDDPNKPYDVRDVITAIVDNGEYLELQ--PYYA--KNIVVGFARIDGKSVGIVANQ--------PKVLAGCLDIDSSD 338 (513)
T ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCEEEC--CCCC--CCEEEEEEEECCEEEEEEECC--------CCEEEEEEECCCCC
T ss_conf 36888777532899999872563202315--5313--320456544247046787448--------53033355214320
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCE
Q ss_conf 999999999971994899995353246778430027999999988862379988999961677775421133----2000
Q gi|254780588|r 139 KAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFV 214 (317)
Q Consensus 139 Ka~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v 214 (317)
T Consensus 339 k~~~f~r~CdafniP~~~~vdvPG~lPG~~qe~~GiirhGak~lyay~eatvP~~t~i~rkayGG~y~am~s~~lGad~v 418 (513)
T TIGR01117 339 KIARFVRFCDAFNIPIVTFVDVPGFLPGVDQEYGGIIRHGAKVLYAYSEATVPKVTIILRKAYGGAYLAMGSKDLGADVV 418 (513)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHHHHCCCEE
T ss_conf 24466543100057535676257757876400032222101020011102455567776412464000000021065447
Q ss_pred EEECCCCEEEECHHHHHHHHCCCC---HHHHHHHHHCC--------CCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHH
Q ss_conf 220467401215544224421560---12256554203--------8848999789965262288984448989999999
Q gi|254780588|r 215 YMLEHAIYSVISPEGAASILWRDS---SRAAQAAIAMK--------IIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSV 283 (317)
Q Consensus 215 ~m~~~s~ysvisPEg~AsILwkd~---~~a~eAAealk--------lTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~l 283 (317)
T Consensus 419 ~a~Pt~eiavmGP~Ga~~i~f~k~i~~~~~p~~~~~~k~~~y~~~fa~Py~aa~rG~~d~vi-~P------------~~~ 485 (513)
T TIGR01117 419 YAWPTAEIAVMGPEGAANIIFRKDIKEAKDPKALRKQKIAEYREKFANPYKAAARGYVDDVI-EP------------KET 485 (513)
T ss_pred EECCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHC-CC------------HHH
T ss_conf 75165303641652035565455353002657899999999998620525676257311112-71------------457
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999998589
Q gi|254780588|r 284 GEIISQFLSETSTY 297 (317)
Q Consensus 284 k~~i~~~L~~L~~~ 297 (317)
T Consensus 486 r~~~~~al~~l~~k 499 (513)
T TIGR01117 486 RAKVVSALEILESK 499 (513)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999876