HHsearch alignment for GI: 254780588 and conserved domain: TIGR01117

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit; InterPro: IPR005783 This family describes methymalonyl-CoA decarboxylase alpha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.; GO: 0004492 methylmalonyl-CoA decarboxylase activity, 0006814 sodium ion transport.
Probab=99.95  E-value=7.2e-27  Score=211.71  Aligned_cols=211  Identities=26%  Similarity=0.437  Sum_probs=181.4

Q ss_pred             HHHHCCHHHH-HHHHHHHCCC--CEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf             8763500223-7999862254--506722753347897299998875380089998458775023442026776836899
Q gi|254780588|r   62 QVSRHPNRPH-YIDYINSLFT--HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYR  138 (317)
Q Consensus        62 ~~aRh~~Rp~-~~dyi~~l~~--df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~r  138 (317)
T Consensus       271 ~~Pd~~~~~y~~~~vi~~~vdn~~~~e~~--P~y~--~n~~~~f~r~~G~~vGi~an~--------P~~~aG~ld~~~~d  338 (513)
T TIGR01117       271 LLPDDPNKPYDVRDVITAIVDNGEYLELQ--PYYA--KNIVVGFARIDGKSVGIVANQ--------PKVLAGCLDIDSSD  338 (513)
T ss_pred             HCCCCCCCCCCHHHHHHHHHCCCCCEEEC--CCCC--CCEEEEEEEECCEEEEEEECC--------CCEEEEEEECCCCC
T ss_conf             36888777532899999872563202315--5313--320456544247046787448--------53033355214320


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCE
Q ss_conf             999999999971994899995353246778430027999999988862379988999961677775421133----2000
Q gi|254780588|r  139 KAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFV  214 (317)
Q Consensus       139 Ka~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v  214 (317)
T Consensus       339 k~~~f~r~CdafniP~~~~vdvPG~lPG~~qe~~GiirhGak~lyay~eatvP~~t~i~rkayGG~y~am~s~~lGad~v  418 (513)
T TIGR01117       339 KIARFVRFCDAFNIPIVTFVDVPGFLPGVDQEYGGIIRHGAKVLYAYSEATVPKVTIILRKAYGGAYLAMGSKDLGADVV  418 (513)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHHHHCCCEE
T ss_conf             24466543100057535676257757876400032222101020011102455567776412464000000021065447


Q ss_pred             EEECCCCEEEECHHHHHHHHCCCC---HHHHHHHHHCC--------CCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHH
Q ss_conf             220467401215544224421560---12256554203--------8848999789965262288984448989999999
Q gi|254780588|r  215 YMLEHAIYSVISPEGAASILWRDS---SRAAQAAIAMK--------IIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSV  283 (317)
Q Consensus       215 ~m~~~s~ysvisPEg~AsILwkd~---~~a~eAAealk--------lTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~l  283 (317)
T Consensus       419 ~a~Pt~eiavmGP~Ga~~i~f~k~i~~~~~p~~~~~~k~~~y~~~fa~Py~aa~rG~~d~vi-~P------------~~~  485 (513)
T TIGR01117       419 YAWPTAEIAVMGPEGAANIIFRKDIKEAKDPKALRKQKIAEYREKFANPYKAAARGYVDDVI-EP------------KET  485 (513)
T ss_pred             EECCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHC-CC------------HHH
T ss_conf             75165303641652035565455353002657899999999998620525676257311112-71------------457


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999998589
Q gi|254780588|r  284 GEIISQFLSETSTY  297 (317)
Q Consensus       284 k~~i~~~L~~L~~~  297 (317)
T Consensus       486 r~~~~~al~~l~~k  499 (513)
T TIGR01117       486 RAKVVSALEILESK  499 (513)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999876